Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAATCCCTTATGTTTTTTGTGCAAGAAAAAGGCGGAGACGGTGGATCACTTGTTGTGGGAATGCAAGGTTACAAAACCTGTCTGGTTTTCCTTTTTCCCAATCTAACACGAGGTTCCTGATTTTTTCAGGTTGGGGGGCGGTTGCCTAGGAAGATGGGAGCGGCTAATGGAGTTTCCAAATTCAATTGTCACTACAACAAACATTTTTTGGAACATTTGGATCCATAGAAATGCTGTAAAGAACAATTCGATTCATCCAGACCCAAAATCCATTATCAGAGGTATAAACAGTAGACTGACGAAAAAGTTTTACCTGAACGCTTCATCGCCAAGCAATCGTTGCTTGGAGAACTACTTGAGTCATAGAGCCTGGATCCTGCCCCCTCCAAACGTGTGGAAAATCAATTGTGATGCCTCTTGGTCGGGAAATTATGGCTGCGGAGGACTTGGTTGGATCACCCATGACTCCAATGGTTCTTTGATCAGCGCTGGTTTCAGGAAAATCAAGAAGCTTTGGCTGATAAAATAG
mRNA sequence
ATGCTAATCCCTTATGTTTTTTGTGCAAGAAAAAGGCGGAGACGGTGGATCACTTGTTGTGGGAATGCAAGGTTGGGGGGCGGTTGCCTAGGAAGATGGGAGCGGCTAATGGAGTTTCCAAATTCAATTGTCACTACAACAAACATTTTTTGGAACATTTGGATCCATAGAAATGCTGTAAAGAACAATTCGATTCATCCAGACCCAAAATCCATTATCAGAGGTATAAACAGTAGACTGACGAAAAAGTTTTACCTGAACGCTTCATCGCCAAGCAATCGTTGCTTGGAGAACTACTTGAGTCATAGAGCCTGGATCCTGCCCCCTCCAAACGTGTGGAAAATCAATTGTGATGCCTCTTGGTCGGGAAATTATGGCTGCGGAGGACTTGGTTGGATCACCCATGACTCCAATGGTTCTTTGATCAGCGCTGGTTTCAGGAAAATCAAGAAGCTTTGGCTGATAAAATAG
Coding sequence (CDS)
ATGCTAATCCCTTATGTTTTTTGTGCAAGAAAAAGGCGGAGACGGTGGATCACTTGTTGTGGGAATGCAAGGTTGGGGGGCGGTTGCCTAGGAAGATGGGAGCGGCTAATGGAGTTTCCAAATTCAATTGTCACTACAACAAACATTTTTTGGAACATTTGGATCCATAGAAATGCTGTAAAGAACAATTCGATTCATCCAGACCCAAAATCCATTATCAGAGGTATAAACAGTAGACTGACGAAAAAGTTTTACCTGAACGCTTCATCGCCAAGCAATCGTTGCTTGGAGAACTACTTGAGTCATAGAGCCTGGATCCTGCCCCCTCCAAACGTGTGGAAAATCAATTGTGATGCCTCTTGGTCGGGAAATTATGGCTGCGGAGGACTTGGTTGGATCACCCATGACTCCAATGGTTCTTTGATCAGCGCTGGTTTCAGGAAAATCAAGAAGCTTTGGCTGATAAAATAG
Protein sequence
MLIPYVFCARKRRRRWITCCGNARLGGGCLGRWERLMEFPNSIVTTTNIFWNIWIHRNAVKNNSIHPDPKSIIRGINSRLTKKFYLNASSPSNRCLENYLSHRAWILPPPNVWKINCDASWSGNYGCGGLGWITHDSNGSLISAGFRKIKKLWLIK
Homology
BLAST of Lcy11g014220 vs. ExPASy TrEMBL
Match:
A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)
HSP 1 Score: 67.8 bits (164), Expect = 4.6e-08
Identity = 47/146 (32.19%), Postives = 65/146 (44.52%), Query Frame = 0
Query: 21 GNARLGGGCLGRWERLMEF--PNSIVTTTNIFWNIWIHRN--AVKNNSIHPD--PKSIIR 80
GN R+ W L+ + T+ I W IW RN + +I +SI+
Sbjct: 7 GNVRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVL 66
Query: 81 GINSRLTKKFYLNASS---------PSNRCLENYLSHRAWILPPPNVWKINCDASWSGNY 140
INS + K ++ + P R N L R W PP N WK+N DASWS
Sbjct: 67 FINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVR-WSAPPTNCWKLNTDASWSEER 126
Query: 141 GCGGLGWITHDSNGSLISAGFRKIKK 152
GG+GWI D G ++ AG KI++
Sbjct: 127 EVGGIGWILCDCRGEIVLAGNCKIRE 151
BLAST of Lcy11g014220 vs. ExPASy TrEMBL
Match:
A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)
HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = 0
Query: 51 WNIWIHRNAVKNNSIHPDPKSIIRGINSRLTKKFYLNASSPS--NRCLENYLSHRAWILP 110
W IW HRN V H ++I+ + +T+ Y + +S S ++ L N L W P
Sbjct: 18 WVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKTLNNKLK---WEPP 77
Query: 111 PPNVWKINCDASWSGNYGCGGLGWITHDSNGSLISAGFRKIK 151
P ++W +N DASWS + GG+GWI +G ++ AG R ++
Sbjct: 78 PMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVE 116
BLAST of Lcy11g014220 vs. ExPASy TrEMBL
Match:
A0A6J5XPQ2 (RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS35944 PE=4 SV=1)
HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 32/97 (32.99%), Postives = 53/97 (54.64%), Query Frame = 0
Query: 51 WNIWIHRNAVKNNSIHPDPKSIIRGINSRLTKKFYLNASSPSNRCLENYLS--HRAWILP 110
W IW RN+V + + DP + + +++ ++ + + + L+ S ++W P
Sbjct: 166 WRIWKARNSVVFDGVQADPAEAVHLLLQQVS-EYRIAKQNLQPQPLQPASSPVPQSWCKP 225
Query: 111 PPNVWKINCDASWSGNYGCGGLGWITHDSNGSLISAG 146
PP K+NCDA+WS CGG+GW+ DS G L+ AG
Sbjct: 226 PPGFLKVNCDAAWSAQRLCGGVGWVIRDSFGLLLCAG 261
BLAST of Lcy11g014220 vs. ExPASy TrEMBL
Match:
A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)
HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 31/96 (32.29%), Postives = 45/96 (46.88%), Query Frame = 0
Query: 49 IFWNIWIHRNAVKNNSIHPDPKSIIRGINSRLTKKFYLNASSPSNRCLENYLSHRAWILP 108
+ W+IW +RN + +++I IR +F N N +N W P
Sbjct: 22 LLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTNLGGNLNMEDKNLPRTVGWTPP 81
Query: 109 PPNVWKINCDASWSGNYGCGGLGWITHDSNGSLISA 145
++WK+N DA+W + GGLGWI DS G I A
Sbjct: 82 AQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMA 117
BLAST of Lcy11g014220 vs. ExPASy TrEMBL
Match:
A0A4Y1R838 (Ribonuclease H-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_010255 PE=4 SV=1)
HSP 1 Score: 64.3 bits (155), Expect = 5.1e-07
Identity = 36/132 (27.27%), Postives = 56/132 (42.42%), Query Frame = 0
Query: 27 GGCLGRWERLMEF-------PNSIVTTTNIFWNIWIHRNAVKNNSIHPDPKSIIRGINSR 86
G L RW+ L EF ++ + W IW RN + + P + + ++
Sbjct: 351 GDFLARWKTLREFYDTRGRVEEALQLVAFVLWRIWKCRNTLVFTGVRIQPCDAVALLLTQ 410
Query: 87 LTKKFYLN------ASSPSNRCLENYLSHRAWILPPPNVWKINCDASWSGNYGCGGLGWI 146
+ + +N A P ++ W PPP + K+NCD +W G GG+GW+
Sbjct: 411 VDEFNVVNVATTVPAQQPGAPSDSVGVASPGWSSPPPGLVKLNCDGAWVAQTGRGGVGWV 470
BLAST of Lcy11g014220 vs. NCBI nr
Match:
XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])
HSP 1 Score: 67.8 bits (164), Expect = 9.6e-08
Identity = 47/146 (32.19%), Postives = 65/146 (44.52%), Query Frame = 0
Query: 21 GNARLGGGCLGRWERLMEF--PNSIVTTTNIFWNIWIHRN--AVKNNSIHPD--PKSIIR 80
GN R+ W L+ + T+ I W IW RN + +I +SI+
Sbjct: 7 GNVRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVL 66
Query: 81 GINSRLTKKFYLNASS---------PSNRCLENYLSHRAWILPPPNVWKINCDASWSGNY 140
INS + K ++ + P R N L R W PP N WK+N DASWS
Sbjct: 67 FINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVR-WSAPPTNCWKLNTDASWSEER 126
Query: 141 GCGGLGWITHDSNGSLISAGFRKIKK 152
GG+GWI D G ++ AG KI++
Sbjct: 127 EVGGIGWILCDCRGEIVLAGNCKIRE 151
BLAST of Lcy11g014220 vs. NCBI nr
Match:
XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])
HSP 1 Score: 66.2 bits (160), Expect = 2.8e-07
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = 0
Query: 51 WNIWIHRNAVKNNSIHPDPKSIIRGINSRLTKKFYLNASSPS--NRCLENYLSHRAWILP 110
W IW HRN V H ++I+ + +T+ Y + +S S ++ L N L W P
Sbjct: 18 WVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKTLNNKLK---WEPP 77
Query: 111 PPNVWKINCDASWSGNYGCGGLGWITHDSNGSLISAGFRKIK 151
P ++W +N DASWS + GG+GWI +G ++ AG R ++
Sbjct: 78 PMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVE 116
BLAST of Lcy11g014220 vs. NCBI nr
Match:
CAB4313148.1 (unnamed protein product [Prunus armeniaca])
HSP 1 Score: 65.9 bits (159), Expect = 3.6e-07
Identity = 32/97 (32.99%), Postives = 53/97 (54.64%), Query Frame = 0
Query: 51 WNIWIHRNAVKNNSIHPDPKSIIRGINSRLTKKFYLNASSPSNRCLENYLS--HRAWILP 110
W IW RN+V + + DP + + +++ ++ + + + L+ S ++W P
Sbjct: 166 WRIWKARNSVVFDGVQADPAEAVHLLLQQVS-EYRIAKQNLQPQPLQPASSPVPQSWCKP 225
Query: 111 PPNVWKINCDASWSGNYGCGGLGWITHDSNGSLISAG 146
PP K+NCDA+WS CGG+GW+ DS G L+ AG
Sbjct: 226 PPGFLKVNCDAAWSAQRLCGGVGWVIRDSFGLLLCAG 261
BLAST of Lcy11g014220 vs. NCBI nr
Match:
XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])
HSP 1 Score: 65.9 bits (159), Expect = 3.6e-07
Identity = 31/96 (32.29%), Postives = 45/96 (46.88%), Query Frame = 0
Query: 49 IFWNIWIHRNAVKNNSIHPDPKSIIRGINSRLTKKFYLNASSPSNRCLENYLSHRAWILP 108
+ W+IW +RN + +++I IR +F N N +N W P
Sbjct: 22 LLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTNLGGNLNMEDKNLPRTVGWTPP 81
Query: 109 PPNVWKINCDASWSGNYGCGGLGWITHDSNGSLISA 145
++WK+N DA+W + GGLGWI DS G I A
Sbjct: 82 AQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMA 117
BLAST of Lcy11g014220 vs. NCBI nr
Match:
BBH00303.1 (Ribonuclease H-like superfamily protein [Prunus dulcis])
HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 36/132 (27.27%), Postives = 56/132 (42.42%), Query Frame = 0
Query: 27 GGCLGRWERLMEF-------PNSIVTTTNIFWNIWIHRNAVKNNSIHPDPKSIIRGINSR 86
G L RW+ L EF ++ + W IW RN + + P + + ++
Sbjct: 351 GDFLARWKTLREFYDTRGRVEEALQLVAFVLWRIWKCRNTLVFTGVRIQPCDAVALLLTQ 410
Query: 87 LTKKFYLN------ASSPSNRCLENYLSHRAWILPPPNVWKINCDASWSGNYGCGGLGWI 146
+ + +N A P ++ W PPP + K+NCD +W G GG+GW+
Sbjct: 411 VDEFNVVNVATTVPAQQPGAPSDSVGVASPGWSSPPPGLVKLNCDGAWVAQTGRGGVGWV 470
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CQG0 | 4.6e-08 | 32.19 | uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... | [more] |
A0A6J1DNV9 | 1.3e-07 | 34.31 | uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A6J5XPQ2 | 1.8e-07 | 32.99 | RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCU... | [more] |
A0A6J1D4B6 | 1.8e-07 | 32.29 | uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017... | [more] |
A0A4Y1R838 | 5.1e-07 | 27.27 | Ribonuclease H-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_010255... | [more] |
Match Name | E-value | Identity | Description | |