Lcy11g014220 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g014220
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr11: 27511341 .. 27511873 (+)
RNA-Seq Expression	Lcy11g014220
Synteny	Lcy11g014220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAATCCCTTATGTTTTTTGTGCAAGAAAAAGGCGGAGACGGTGGATCACTTGTTGTGGGAATGCAAGGTTACAAAACCTGTCTGGTTTTCCTTTTTCCCAATCTAACACGAGGTTCCTGATTTTTTCAGGTTGGGGGGCGGTTGCCTAGGAAGATGGGAGCGGCTAATGGAGTTTCCAAATTCAATTGTCACTACAACAAACATTTTTTGGAACATTTGGATCCATAGAAATGCTGTAAAGAACAATTCGATTCATCCAGACCCAAAATCCATTATCAGAGGTATAAACAGTAGACTGACGAAAAAGTTTTACCTGAACGCTTCATCGCCAAGCAATCGTTGCTTGGAGAACTACTTGAGTCATAGAGCCTGGATCCTGCCCCCTCCAAACGTGTGGAAAATCAATTGTGATGCCTCTTGGTCGGGAAATTATGGCTGCGGAGGACTTGGTTGGATCACCCATGACTCCAATGGTTCTTTGATCAGCGCTGGTTTCAGGAAAATCAAGAAGCTTTGGCTGATAAAATAG

mRNA sequence

ATGCTAATCCCTTATGTTTTTTGTGCAAGAAAAAGGCGGAGACGGTGGATCACTTGTTGTGGGAATGCAAGGTTGGGGGGCGGTTGCCTAGGAAGATGGGAGCGGCTAATGGAGTTTCCAAATTCAATTGTCACTACAACAAACATTTTTTGGAACATTTGGATCCATAGAAATGCTGTAAAGAACAATTCGATTCATCCAGACCCAAAATCCATTATCAGAGGTATAAACAGTAGACTGACGAAAAAGTTTTACCTGAACGCTTCATCGCCAAGCAATCGTTGCTTGGAGAACTACTTGAGTCATAGAGCCTGGATCCTGCCCCCTCCAAACGTGTGGAAAATCAATTGTGATGCCTCTTGGTCGGGAAATTATGGCTGCGGAGGACTTGGTTGGATCACCCATGACTCCAATGGTTCTTTGATCAGCGCTGGTTTCAGGAAAATCAAGAAGCTTTGGCTGATAAAATAG

Coding sequence (CDS)

ATGCTAATCCCTTATGTTTTTTGTGCAAGAAAAAGGCGGAGACGGTGGATCACTTGTTGTGGGAATGCAAGGTTGGGGGGCGGTTGCCTAGGAAGATGGGAGCGGCTAATGGAGTTTCCAAATTCAATTGTCACTACAACAAACATTTTTTGGAACATTTGGATCCATAGAAATGCTGTAAAGAACAATTCGATTCATCCAGACCCAAAATCCATTATCAGAGGTATAAACAGTAGACTGACGAAAAAGTTTTACCTGAACGCTTCATCGCCAAGCAATCGTTGCTTGGAGAACTACTTGAGTCATAGAGCCTGGATCCTGCCCCCTCCAAACGTGTGGAAAATCAATTGTGATGCCTCTTGGTCGGGAAATTATGGCTGCGGAGGACTTGGTTGGATCACCCATGACTCCAATGGTTCTTTGATCAGCGCTGGTTTCAGGAAAATCAAGAAGCTTTGGCTGATAAAATAG

Protein sequence

MLIPYVFCARKRRRRWITCCGNARLGGGCLGRWERLMEFPNSIVTTTNIFWNIWIHRNAVKNNSIHPDPKSIIRGINSRLTKKFYLNASSPSNRCLENYLSHRAWILPPPNVWKINCDASWSGNYGCGGLGWITHDSNGSLISAGFRKIKKLWLIK

Homology

[Close]

BLAST of Lcy11g014220 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.6e-08
Identity = 47/146 (32.19%), Postives = 65/146 (44.52%), Query Frame = 0


Query: 21  GNARLGGGCLGRWERLMEF--PNSIVTTTNIFWNIWIHRN--AVKNNSIHPD--PKSIIR 80
           GN R+       W  L+       + T+  I W IW  RN    +  +I      +SI+ 
Sbjct: 7   GNVRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVL 66

Query: 81  GINSRLTKKFYLNASS---------PSNRCLENYLSHRAWILPPPNVWKINCDASWSGNY 140
            INS + K   ++ +          P  R   N L  R W  PP N WK+N DASWS   
Sbjct: 67  FINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVR-WSAPPTNCWKLNTDASWSEER 126

Query: 141 GCGGLGWITHDSNGSLISAGFRKIKK 152
             GG+GWI  D  G ++ AG  KI++
Sbjct: 127 EVGGIGWILCDCRGEIVLAGNCKIRE 151

[Close]

BLAST of Lcy11g014220 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 51  WNIWIHRNAVKNNSIHPDPKSIIRGINSRLTKKFYLNASSPS--NRCLENYLSHRAWILP 110
           W IW HRN V     H    ++I+ +   +T+  Y + +S S  ++ L N L    W  P
Sbjct: 18  WVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKTLNNKLK---WEPP 77

Query: 111 PPNVWKINCDASWSGNYGCGGLGWITHDSNGSLISAGFRKIK 151
           P ++W +N DASWS +   GG+GWI    +G ++ AG R ++
Sbjct: 78  PMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVE 116

[Close]

BLAST of Lcy11g014220 vs. ExPASy TrEMBL
Match: A0A6J5XPQ2 (RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS35944 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 32/97 (32.99%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 51  WNIWIHRNAVKNNSIHPDPKSIIRGINSRLTKKFYLNASSPSNRCLENYLS--HRAWILP 110
           W IW  RN+V  + +  DP   +  +  +++ ++ +   +   + L+   S   ++W  P
Sbjct: 166 WRIWKARNSVVFDGVQADPAEAVHLLLQQVS-EYRIAKQNLQPQPLQPASSPVPQSWCKP 225

Query: 111 PPNVWKINCDASWSGNYGCGGLGWITHDSNGSLISAG 146
           PP   K+NCDA+WS    CGG+GW+  DS G L+ AG
Sbjct: 226 PPGFLKVNCDAAWSAQRLCGGVGWVIRDSFGLLLCAG 261

[Close]

BLAST of Lcy11g014220 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 31/96 (32.29%), Postives = 45/96 (46.88%), Query Frame = 0


Query: 49  IFWNIWIHRNAVKNNSIHPDPKSIIRGINSRLTKKFYLNASSPSNRCLENYLSHRAWILP 108
           + W+IW +RN + +++I       IR        +F  N     N   +N      W  P
Sbjct: 22  LLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTNLGGNLNMEDKNLPRTVGWTPP 81

Query: 109 PPNVWKINCDASWSGNYGCGGLGWITHDSNGSLISA 145
             ++WK+N DA+W  +   GGLGWI  DS G  I A
Sbjct: 82  AQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMA 117

[Close]

BLAST of Lcy11g014220 vs. ExPASy TrEMBL
Match: A0A4Y1R838 (Ribonuclease H-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_010255 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.1e-07
Identity = 36/132 (27.27%), Postives = 56/132 (42.42%), Query Frame = 0


Query: 27  GGCLGRWERLMEF-------PNSIVTTTNIFWNIWIHRNAVKNNSIHPDPKSIIRGINSR 86
           G  L RW+ L EF         ++     + W IW  RN +    +   P   +  + ++
Sbjct: 351 GDFLARWKTLREFYDTRGRVEEALQLVAFVLWRIWKCRNTLVFTGVRIQPCDAVALLLTQ 410

Query: 87  LTKKFYLN------ASSPSNRCLENYLSHRAWILPPPNVWKINCDASWSGNYGCGGLGWI 146
           + +   +N      A  P        ++   W  PPP + K+NCD +W    G GG+GW+
Sbjct: 411 VDEFNVVNVATTVPAQQPGAPSDSVGVASPGWSSPPPGLVKLNCDGAWVAQTGRGGVGWV 470

[Close]

BLAST of Lcy11g014220 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 9.6e-08
Identity = 47/146 (32.19%), Postives = 65/146 (44.52%), Query Frame = 0


Query: 21  GNARLGGGCLGRWERLMEF--PNSIVTTTNIFWNIWIHRN--AVKNNSIHPD--PKSIIR 80
           GN R+       W  L+       + T+  I W IW  RN    +  +I      +SI+ 
Sbjct: 7   GNVRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVL 66

Query: 81  GINSRLTKKFYLNASS---------PSNRCLENYLSHRAWILPPPNVWKINCDASWSGNY 140
            INS + K   ++ +          P  R   N L  R W  PP N WK+N DASWS   
Sbjct: 67  FINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVR-WSAPPTNCWKLNTDASWSEER 126

Query: 141 GCGGLGWITHDSNGSLISAGFRKIKK 152
             GG+GWI  D  G ++ AG  KI++
Sbjct: 127 EVGGIGWILCDCRGEIVLAGNCKIRE 151

[Close]

BLAST of Lcy11g014220 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-07
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 51  WNIWIHRNAVKNNSIHPDPKSIIRGINSRLTKKFYLNASSPS--NRCLENYLSHRAWILP 110
           W IW HRN V     H    ++I+ +   +T+  Y + +S S  ++ L N L    W  P
Sbjct: 18  WVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKTLNNKLK---WEPP 77

Query: 111 PPNVWKINCDASWSGNYGCGGLGWITHDSNGSLISAGFRKIK 151
           P ++W +N DASWS +   GG+GWI    +G ++ AG R ++
Sbjct: 78  PMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVE 116

[Close]

BLAST of Lcy11g014220 vs. NCBI nr
Match: CAB4313148.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-07
Identity = 32/97 (32.99%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 51  WNIWIHRNAVKNNSIHPDPKSIIRGINSRLTKKFYLNASSPSNRCLENYLS--HRAWILP 110
           W IW  RN+V  + +  DP   +  +  +++ ++ +   +   + L+   S   ++W  P
Sbjct: 166 WRIWKARNSVVFDGVQADPAEAVHLLLQQVS-EYRIAKQNLQPQPLQPASSPVPQSWCKP 225

Query: 111 PPNVWKINCDASWSGNYGCGGLGWITHDSNGSLISAG 146
           PP   K+NCDA+WS    CGG+GW+  DS G L+ AG
Sbjct: 226 PPGFLKVNCDAAWSAQRLCGGVGWVIRDSFGLLLCAG 261

[Close]

BLAST of Lcy11g014220 vs. NCBI nr
Match: XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-07
Identity = 31/96 (32.29%), Postives = 45/96 (46.88%), Query Frame = 0


Query: 49  IFWNIWIHRNAVKNNSIHPDPKSIIRGINSRLTKKFYLNASSPSNRCLENYLSHRAWILP 108
           + W+IW +RN + +++I       IR        +F  N     N   +N      W  P
Sbjct: 22  LLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTNLGGNLNMEDKNLPRTVGWTPP 81

Query: 109 PPNVWKINCDASWSGNYGCGGLGWITHDSNGSLISA 145
             ++WK+N DA+W  +   GGLGWI  DS G  I A
Sbjct: 82  AQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMA 117

[Close]

BLAST of Lcy11g014220 vs. NCBI nr
Match: BBH00303.1 (Ribonuclease H-like superfamily protein [Prunus dulcis])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 36/132 (27.27%), Postives = 56/132 (42.42%), Query Frame = 0


Query: 27  GGCLGRWERLMEF-------PNSIVTTTNIFWNIWIHRNAVKNNSIHPDPKSIIRGINSR 86
           G  L RW+ L EF         ++     + W IW  RN +    +   P   +  + ++
Sbjct: 351 GDFLARWKTLREFYDTRGRVEEALQLVAFVLWRIWKCRNTLVFTGVRIQPCDAVALLLTQ 410

Query: 87  LTKKFYLN------ASSPSNRCLENYLSHRAWILPPPNVWKINCDASWSGNYGCGGLGWI 146
           + +   +N      A  P        ++   W  PPP + K+NCD +W    G GG+GW+
Sbjct: 411 VDEFNVVNVATTVPAQQPGAPSDSVGVASPGWSSPPPGLVKLNCDGAWVAQTGRGGVGWV 470

The following BLAST results are available for this feature:

BLAST of Lcy11g014220 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g014220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQG0	4.6e-08	32.19	uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DNV9	1.3e-07	34.31	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J5XPQ2	1.8e-07	32.99	RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCU...	[more]
A0A6J1D4B6	1.8e-07	32.29	uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A4Y1R838	5.1e-07	27.27	Ribonuclease H-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_010255...	[more]

BLAST of Lcy11g014220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143317.1	9.6e-08	32.19	uncharacterized protein LOC111013216 [Momordica charantia]	[more]
XP_022155262.1	2.8e-07	34.31	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
CAB4313148.1	3.6e-07	32.99	unnamed protein product [Prunus armeniaca]	[more]
XP_022148549.1	3.6e-07	32.29	uncharacterized protein LOC111017181 [Momordica charantia]	[more]
BBH00303.1	1.1e-06	27.27	Ribonuclease H-like superfamily protein [Prunus dulcis]	[more]

BLAST of Lcy11g014220 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g014220.1	Lcy11g014220.1	mRNA