Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCAACCCCATCACTCTCAACTCCAACTTAATCTCAGCATCATCAAGTTTTCTCTGGTTAACACCATTTAACAATGGCTTCCATGGTGGCTATTAAGACCTTCATTCTCATCTTCCTCATCTTCACTTGCTTTAATTCAGGTACTTCTGATCTTTTTCCATTTTTTTATCAGCTACATTGTTCGTCTTACGATTACCAAATTAAATTACCATTAGTCGACCTACTAACAAGTGAACTATTAATATGAAATAAATCAAAAATAACAATACTAAAGAGATTTTATCATTTAAGATTTTCGATCAGATAATATCTTAAATCACTATGAAAATGGTTTATGTTCCAATATTGCAGGAGCCACCCATGATTCGAGCATGAAGAAGGGTTATTTAAAGGAAGAACCAAGTCCTTGTGGTCAGGTAATTGAACCATATAGTTTTAATTTATTTTATTTTTCTTGTGTTGGAATGTGACCATTTTTGGATATAGTAGAATATTATTTCTTGGTTTTTACTGGTAATTATTTTAATAATGGATGGAGGACATTAATTTGCAGAGGATTGTGAAAGGAAAAGTGATGAGAAAGGTTTTGGGAATTGAAGCAATATTGATGGACTATCATGAGCCAGGTGCCAACCCAAGTCATGAGCCAAAAAAAGGAAGCCCTGGAGGTCGAGCAAGCATCAATCCTTGAATATTATTCAATAATGCTCTTTAAACCAATACAATAAAGTTTCTGTAATTCTTGAAACTCAGTACATAAATAAAATTACAACATTATGTAATGTATATTGATTTGCTGCACTTTATTACCATAAATAATAATATATCACTTTT
mRNA sequence
CTCCAACCCCATCACTCTCAACTCCAACTTAATCTCAGCATCATCAAGTTTTCTCTGGTTAACACCATTTAACAATGGCTTCCATGGTGGCTATTAAGACCTTCATTCTCATCTTCCTCATCTTCACTTGCTTTAATTCAGGAGCCACCCATGATTCGAGCATGAAGAAGGGTTATTTAAAGGAAGAACCAAGTCCTTGTGGTCAGAGGATTGTGAAAGGAAAAGTGATGAGAAAGGTTTTGGGAATTGAAGCAATATTGATGGACTATCATGAGCCAGGTGCCAACCCAAGTCATGAGCCAAAAAAAGGAAGCCCTGGAGGTCGAGCAAGCATCAATCCTTGAATATTATTCAATAATGCTCTTTAAACCAATACAATAAAGTTTCTGTAATTCTTGAAACTCAGTACATAAATAAAATTACAACATTATGTAATGTATATTGATTTGCTGCACTTTATTACCATAAATAATAATATATCACTTTT
Coding sequence (CDS)
ATGGCTTCCATGGTGGCTATTAAGACCTTCATTCTCATCTTCCTCATCTTCACTTGCTTTAATTCAGGAGCCACCCATGATTCGAGCATGAAGAAGGGTTATTTAAAGGAAGAACCAAGTCCTTGTGGTCAGAGGATTGTGAAAGGAAAAGTGATGAGAAAGGTTTTGGGAATTGAAGCAATATTGATGGACTATCATGAGCCAGGTGCCAACCCAAGTCATGAGCCAAAAAAAGGAAGCCCTGGAGGTCGAGCAAGCATCAATCCTTGA
Protein sequence
MASMVAIKTFILIFLIFTCFNSGATHDSSMKKGYLKEEPSPCGQRIVKGKVMRKVLGIEAILMDYHEPGANPSHEPKKGSPGGRASINP
Homology
BLAST of Lcy11g007500 vs. ExPASy TrEMBL
Match:
A0A5A7TNM7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003170 PE=4 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 9.7e-11
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 0
Query: 29 SMKKGYLKEEPSPCGQRIV--KGKVMRKVLG-IEAILMDYHEPGANPSHEPKKGSPGGR 85
S+K+G +E +PCGQ + KGKVMRK+LG E ILMDY+EP ANPSHEP++G+PGGR
Sbjct: 2 SLKEGLNEEHNNPCGQMRIGRKGKVMRKILGNEEGILMDYNEPSANPSHEPRRGTPGGR 60
BLAST of Lcy11g007500 vs. ExPASy TrEMBL
Match:
A0A0A0KYH7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055320 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 4.8e-10
Identity = 46/82 (56.10%), Postives = 53/82 (64.63%), Query Frame = 0
Query: 7 IKTFILIFLIFTCF-NSGATHDSSMKKGYLKEEPSPCGQRIVK--GKVMRKVLGIEAILM 66
IKTFI IFLI F NSG HD S+KKG + +PCGQ IV+ KV RK+LG EA
Sbjct: 5 IKTFIFIFLIIFMFPNSGDAHDLSLKKGL--KLSNPCGQLIVEKNNKVTRKLLGAEA-FA 64
Query: 67 DYHEPGANPSHEPKKGSPGGRA 86
DY P N HEP+ G+PGGRA
Sbjct: 65 DYASPDHNTRHEPRFGNPGGRA 83
BLAST of Lcy11g007500 vs. ExPASy TrEMBL
Match:
A0A5D3D203 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003180 PE=4 SV=1)
HSP 1 Score: 71.2 bits (173), Expect = 2.4e-09
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 0
Query: 7 IKTFILIFL-IFTCFNSGATHDSSMKKGYLKEEPSPCGQRIVK--GKVMRKVLGIEAILM 66
IKTFI IFL IFT +SG D S+KKG + +PCGQ IV+ +V RK+LG E +L+
Sbjct: 5 IKTFIFIFLIIFTFPDSGDAGDLSLKKGL--KLSNPCGQMIVEKNNRVTRKLLGAE-VLL 64
Query: 67 DYHEPGANPSHEPKKGSPGGRA 86
DY P N HEP+ GSPGGRA
Sbjct: 65 DYASPDHNSRHEPRFGSPGGRA 83
BLAST of Lcy11g007500 vs. ExPASy TrEMBL
Match:
A0A6A1ULL4 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G004811 PE=4 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 2.7e-05
Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = 0
Query: 8 KTFILIFLIFTCFNSGATHD---SSMKKGYLKEEPSPCGQRIVKGKVMRKVLGIEAILMD 67
K FI + L+ ++S D SM+ Y P G+ +++ K RK+LG L D
Sbjct: 11 KAFIPVLLLLLIWSSSVRADGFRDSMELTY------PHGEVMIRIKA-RKLLGRVDTLSD 70
Query: 68 YHEPGANPSHEPKKGSPGGRASINP 90
Y P ANP+HEPKKGSPGG+ S NP
Sbjct: 71 YQYPSANPTHEPKKGSPGGKGSNNP 88
BLAST of Lcy11g007500 vs. ExPASy TrEMBL
Match:
A0A2N9H0D0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35859 PE=4 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 8.0e-05
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 0
Query: 7 IKTFILIFLIFTCFNSGATHDSSMKKGYLKEEPSPCGQRIVKGKVMRKVLGIEAILMDYH 66
IKTFILI L+ ++ D S K G E+ P + ++ K MRK++G++A L+DYH
Sbjct: 10 IKTFILILLLVPICSASGKAD-SFKDG--MEQTYPPSEVKIQMK-MRKLIGVDA-LLDYH 69
Query: 67 EPGANPSHE---PKKGSPGGRASIN 89
+P ANP+HE PKKGS GG+ N
Sbjct: 70 DPVANPAHEPPPPKKGSTGGKGGNN 89
BLAST of Lcy11g007500 vs. NCBI nr
Match:
KAG6600410.1 (hypothetical protein SDJN03_05643, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 98.6 bits (244), Expect = 2.9e-17
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 0
Query: 1 MASMVAIKTFILIFLIFTCFNSGATHDSSMKKGYLKEEPSPCGQRIVKGKVMRKVLGIEA 60
MASM+ I I FLIFT +SG H S++ L E+P+P QRI VMRKVLG++A
Sbjct: 1 MASMLPI---IFTFLIFTSPSSGRAHGPSLQPD-LNEKPNPYSQRI----VMRKVLGMDA 60
Query: 61 ILMDYHEPGANPSHEPKKGSPGGRASINP 90
LMDYHEPGANPSHEP++GSPGGRAS NP
Sbjct: 61 TLMDYHEPGANPSHEPRRGSPGGRASFNP 81
BLAST of Lcy11g007500 vs. NCBI nr
Match:
KAG6600409.1 (hypothetical protein SDJN03_05642, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 86.3 bits (212), Expect = 1.5e-13
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 0
Query: 1 MASMVAIKTFILIFLIFTCFNSGATHDSSMKKGYLKEEPSPCGQRIVKGKVMRKVLGIEA 60
MASM A KTFI IFL+F C NSG +K+G + P+PCGQ I++ K +RK+LG E
Sbjct: 1 MASMAAFKTFIFIFLVFICPNSGDADGLRLKEGL--KLPNPCGQVIIEKKGVRKLLGAEE 60
Query: 61 ILMDYHEPGANPSHEPKKGSPGGRA 86
L+DY P NP HEP+ G+PGGRA
Sbjct: 61 -LLDYASPSHNPRHEPRVGNPGGRA 82
BLAST of Lcy11g007500 vs. NCBI nr
Match:
KAG6577123.1 (hypothetical protein SDJN03_24697, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 45/86 (52.33%), Postives = 54/86 (62.79%), Query Frame = 0
Query: 1 MASMVAIKTFILIFLIFTCFNSGATHDSSMKKGYLKEEPSPCGQ-RIVKGKVMRKVLGIE 60
MASM A TF IFL+FT NSG ++K+G + P+PCGQ R+ K KV RK+LG E
Sbjct: 1 MASMAAFNTFFFIFLLFTYPNSGVADGLNLKEGL--KLPNPCGQVRVEKNKVARKLLGAE 60
Query: 61 AILMDYHEPGANPSHEPKKGSPGGRA 86
DY P N HEP+ GSPGGRA
Sbjct: 61 E-FSDYASPEHNRRHEPRIGSPGGRA 83
BLAST of Lcy11g007500 vs. NCBI nr
Match:
KAA0044962.1 (hypothetical protein E6C27_scaffold74G002680 [Cucumis melo var. makuwa] >TYK16508.1 hypothetical protein E5676_scaffold21G003170 [Cucumis melo var. makuwa])
HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 0
Query: 29 SMKKGYLKEEPSPCGQRIV--KGKVMRKVLG-IEAILMDYHEPGANPSHEPKKGSPGGR 85
S+K+G +E +PCGQ + KGKVMRK+LG E ILMDY+EP ANPSHEP++G+PGGR
Sbjct: 2 SLKEGLNEEHNNPCGQMRIGRKGKVMRKILGNEEGILMDYNEPSANPSHEPRRGTPGGR 60
BLAST of Lcy11g007500 vs. NCBI nr
Match:
KGN53437.1 (hypothetical protein Csa_015314 [Cucumis sativus])
HSP 1 Score: 73.6 bits (179), Expect = 9.9e-10
Identity = 46/82 (56.10%), Postives = 53/82 (64.63%), Query Frame = 0
Query: 7 IKTFILIFLIFTCF-NSGATHDSSMKKGYLKEEPSPCGQRIVK--GKVMRKVLGIEAILM 66
IKTFI IFLI F NSG HD S+KKG + +PCGQ IV+ KV RK+LG EA
Sbjct: 5 IKTFIFIFLIIFMFPNSGDAHDLSLKKGL--KLSNPCGQLIVEKNNKVTRKLLGAEA-FA 64
Query: 67 DYHEPGANPSHEPKKGSPGGRA 86
DY P N HEP+ G+PGGRA
Sbjct: 65 DYASPDHNTRHEPRFGNPGGRA 83
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TNM7 | 9.7e-11 | 62.71 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0KYH7 | 4.8e-10 | 56.10 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055320 PE=4 SV=1 | [more] |
A0A5D3D203 | 2.4e-09 | 54.88 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A6A1ULL4 | 2.7e-05 | 42.35 | Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G004811 PE=4 SV=1 | [more] |
A0A2N9H0D0 | 8.0e-05 | 44.71 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35859 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAG6600410.1 | 2.9e-17 | 61.80 | hypothetical protein SDJN03_05643, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6600409.1 | 1.5e-13 | 54.12 | hypothetical protein SDJN03_05642, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6577123.1 | 1.5e-10 | 52.33 | hypothetical protein SDJN03_24697, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAA0044962.1 | 2.0e-10 | 62.71 | hypothetical protein E6C27_scaffold74G002680 [Cucumis melo var. makuwa] >TYK1650... | [more] |
KGN53437.1 | 9.9e-10 | 56.10 | hypothetical protein Csa_015314 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |