Lcy11g007200 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g007200
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein MODIFYING WALL LIGNIN-2-like
Location	Chr11: 7395194 .. 7396143 (-)
RNA-Seq Expression	Lcy11g007200
Synteny	Lcy11g007200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAACGCCGTTTCGGCTACGCCTTAAGCCTCTCGATCGTCGTCTCACTCGCACTTGTCGCCTTTGCCTCGTGTATAGCTGCAGAATTACACAGAACAAAGGTACAGAGTTCATAGCACAGGTCTCTTTGTGCAATAAGAATTTGGTTTTTGACTAACTTTCTCCCTATTTTTGGTAGACCAAAGACCTCAGGTTGGATGGGAAACTGTGCTATTTGCCAGAAAGTCAAGCATTTGGATATGGAGTTGCAGCTTTGGTTTGTTTGGTTATGGCTCAAGTTATTGGGAATATTTTACTTTGCACAAGTTTCAAGTTCAATTCAAGAGAGAAGAAAAGCATTGAACAATCTCCTAAAAGATTAAGCTTAGCCAGAATTCTTCTTGTTGTTTCTTGGTAGGTATGATTCATTTATATAGTTTTAACTGTTTCATCAACCTTCAAAAATTCATTCAAATCACCAATCAATGGCCGTAAACATTCAATTTCAACCTCTGATATAAATATTTCAAGAATCAATCATCTAATCTCATTCATCTTTGATTCAATTGCTAGAGAATTTGATCACATTTCATTATTCTGATTCAGAATCTTCAAAGAAATTTGTAAGACTTCCAGAGCAATATAAGAACAACGAAAGTTAATTGCATCATAAAACAAAATTTCAATTCAAATCGAAATGGAATCCGATCGAAAATGTAATTCAACAGGAGATTTGATGTTCTAGGGCAAGCTTTACCGTGGTGATATTGCTACTGAGCGTGGCGACGAGCATGAGCAGACGGCAGCTGTACACGGAGGGCTGGTTGGGCGGCGAGTGCTATTTGGTGAAGGGCGGCGTATACATCGCCGCAGCAATTTTGATCATCGTTTCGACATGCTCGACCGTCGGCTCCGCCGTAGCATTCTTGAGGAAGAGCCTTCAGATGGAAGAATCCAGAAAAACTAG

mRNA sequence

ATGGAAAAACGCCGTTTCGGCTACGCCTTAAGCCTCTCGATCGTCGTCTCACTCGCACTTGTCGCCTTTGCCTCGTGTATAGCTGCAGAATTACACAGAACAAAGACCAAAGACCTCAGGTTGGATGGGAAACTGTGCTATTTGCCAGAAAGTCAAGCATTTGGATATGGAGTTGCAGCTTTGGGCAAGCTTTACCGTGGTGATATTGCTACTGAGCGTGGCGACGAGCATGAGCAGACGGCAGCTGTACACGGAGGGCTGGTTGGGCGGCGAGTGCTATTTGGTGAAGGGCGGCGTATACATCGCCGCAGCAATTTTGATCATCGTTTCGACATGCTCGACCGTCGGCTCCGCCGTAGCATTCTTGAGGAAGAGCCTTCAGATGGAAGAATCCAGAAAAACTAG

Coding sequence (CDS)

ATGGAAAAACGCCGTTTCGGCTACGCCTTAAGCCTCTCGATCGTCGTCTCACTCGCACTTGTCGCCTTTGCCTCGTGTATAGCTGCAGAATTACACAGAACAAAGACCAAAGACCTCAGGTTGGATGGGAAACTGTGCTATTTGCCAGAAAGTCAAGCATTTGGATATGGAGTTGCAGCTTTGGGCAAGCTTTACCGTGGTGATATTGCTACTGAGCGTGGCGACGAGCATGAGCAGACGGCAGCTGTACACGGAGGGCTGGTTGGGCGGCGAGTGCTATTTGGTGAAGGGCGGCGTATACATCGCCGCAGCAATTTTGATCATCGTTTCGACATGCTCGACCGTCGGCTCCGCCGTAGCATTCTTGAGGAAGAGCCTTCAGATGGAAGAATCCAGAAAAACTAG

Protein sequence

MEKRRFGYALSLSIVVSLALVAFASCIAAELHRTKTKDLRLDGKLCYLPESQAFGYGVAALGKLYRGDIATERGDEHEQTAAVHGGLVGRRVLFGEGRRIHRRSNFDHRFDMLDRRLRRSILEEEPSDGRIQKN

Homology

[Close]

BLAST of Lcy11g007200 vs. ExPASy Swiss-Prot
Match: O65708 (Protein MODIFYING WALL LIGNIN-2 OS=Arabidopsis thaliana OX=3702 GN=MWL2 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.0e-05
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 13 SIVVSLALVAFASCIAAELHRTKTKDLRLD-GKLCYLPESQAFGYGVAAL 62
          S+V SL LV+F +C AAE  RT+ +D+R D  + CY+P S AFG G AA+
Sbjct: 8  SVVFSLGLVSFITCFAAEFKRTQKEDIRWDTERNCYVPGSHAFGLGSAAV 57

[Close]

BLAST of Lcy11g007200 vs. ExPASy Swiss-Prot
Match: A2RVU1 (Protein MODIFYING WALL LIGNIN-1 OS=Arabidopsis thaliana OX=3702 GN=MWL1 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 6.8e-05
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 20 LVAFASCIAAELHRTKT----------KDLRLDGKLCYLPESQAFGYGVAAL 62
          L AF  C++AE  + K           KDL+ DG+ CYLPE++AFG G+AAL
Sbjct: 8  LAAFFLCLSAEFQKAKALLRAQVFLKGKDLKWDGESCYLPENRAFGLGIAAL 59

[Close]

BLAST of Lcy11g007200 vs. ExPASy TrEMBL
Match: A0A5D3CY18 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002500 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.1e-40
Identity = 98/140 (70.00%), Postives = 108/140 (77.14%), Query Frame = 0


Query: 1   MEKRRFGYALSLSIVVSLALVAFASCIAAELHRTKTKDLRLDGKLCYLPESQAFGYGVAA 60
           M K  FGYALSLSIVVSLAL+AF SC+AAELHRTKTKDL+LDGKLCYLPESQAFGYGVAA
Sbjct: 1   MGKHCFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61  L-------GKLYRGDIATERGDEHEQTAAVHGGLVGRRVLFGEGRRIHRRSNFDHRFDML 120
           L       GKLYRGDIAT+ G E+EQTAAV  G+VGRRVL GE R I RRSN +   DM 
Sbjct: 61  LACLVMAQGKLYRGDIATDCGVEYEQTAAVRNGMVGRRVLLGEKRCIRRRSNSNPHLDMH 120

Query: 121 DRRLRRSILEEEPSDGRIQK 134
           +RRL R+      S+ RIQK
Sbjct: 121 NRRLSRN-----SSNERIQK 135

[Close]

BLAST of Lcy11g007200 vs. ExPASy TrEMBL
Match: A0A0A0KYL9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056580 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 1  MEKRRFGYALSLSIVVSLALVAFASCIAAELHRTKTKDLRLDGKLCYLPESQAFGYGVAA 60
          M K RFGYALSLSIVVSLAL+AF SC+AAELHRTKTKDL+LDGKLCYLPESQAFGYGVAA
Sbjct: 1  MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61 LGKLYRGDI 70
          L  L    +
Sbjct: 61 LACLVMAQV 69

[Close]

BLAST of Lcy11g007200 vs. ExPASy TrEMBL
Match: A0A5A7T9R1 (DUF1218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold118G00180 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.1e-21
Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1  MEKRRFGYALSLSIVVSLALVAFASCIAAELHRTKTKDLRLDGKLCYLPESQAFGYGVAA 60
          M K  FGYALSLSIVVSLAL+AF SC+AAELHRTKTKDL+LDGKLCYLPESQAFGYGVAA
Sbjct: 1  MGKHCFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61 LGKLYRGDI 70
          L  L    +
Sbjct: 61 LACLVMAQV 69

[Close]

BLAST of Lcy11g007200 vs. ExPASy TrEMBL
Match: A0A1S3BTM2 (uncharacterized protein LOC103493027 OS=Cucumis melo OX=3656 GN=LOC103493027 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.1e-21
Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1  MEKRRFGYALSLSIVVSLALVAFASCIAAELHRTKTKDLRLDGKLCYLPESQAFGYGVAA 60
          M K  FGYALSLSIVVSLAL+AF SC+AAELHRTKTKDL+LDGKLCYLPESQAFGYGVAA
Sbjct: 1  MGKHCFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61 LGKLYRGDI 70
          L  L    +
Sbjct: 61 LACLVMAQV 69

[Close]

BLAST of Lcy11g007200 vs. ExPASy TrEMBL
Match: A0A6J1FSJ4 (uncharacterized protein LOC111446907 OS=Cucurbita moschata OX=3662 GN=LOC111446907 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 9.1e-21
Identity = 57/64 (89.06%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MEKRRFGYALSLSIVVSLALVAFASCIAAELHRTKTKDLRLDGKLCYLPESQAFGYGVAA 60
          MEKRRF YALSLSIVVS ALVA  SCIAAELHRTKTKDLRLDGKLCYLPESQAF YGVAA
Sbjct: 1  MEKRRFVYALSLSIVVSFALVAIVSCIAAELHRTKTKDLRLDGKLCYLPESQAFRYGVAA 60

Query: 61 LGKL 65
          L  L
Sbjct: 61 LACL 64

[Close]

BLAST of Lcy11g007200 vs. NCBI nr
Match: TYK16452.1 (uncharacterized protein E5676_scaffold21G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-39
Identity = 98/140 (70.00%), Postives = 108/140 (77.14%), Query Frame = 0


Query: 1   MEKRRFGYALSLSIVVSLALVAFASCIAAELHRTKTKDLRLDGKLCYLPESQAFGYGVAA 60
           M K  FGYALSLSIVVSLAL+AF SC+AAELHRTKTKDL+LDGKLCYLPESQAFGYGVAA
Sbjct: 1   MGKHCFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61  L-------GKLYRGDIATERGDEHEQTAAVHGGLVGRRVLFGEGRRIHRRSNFDHRFDML 120
           L       GKLYRGDIAT+ G E+EQTAAV  G+VGRRVL GE R I RRSN +   DM 
Sbjct: 61  LACLVMAQGKLYRGDIATDCGVEYEQTAAVRNGMVGRRVLLGEKRCIRRRSNSNPHLDMH 120

Query: 121 DRRLRRSILEEEPSDGRIQK 134
           +RRL R+      S+ RIQK
Sbjct: 121 NRRLSRN-----SSNERIQK 135

[Close]

BLAST of Lcy11g007200 vs. NCBI nr
Match: XP_011653242.1 (protein MODIFYING WALL LIGNIN-2 [Cucumis sativus] >KGN53467.1 hypothetical protein Csa_014473 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-21
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 1  MEKRRFGYALSLSIVVSLALVAFASCIAAELHRTKTKDLRLDGKLCYLPESQAFGYGVAA 60
          M K RFGYALSLSIVVSLAL+AF SC+AAELHRTKTKDL+LDGKLCYLPESQAFGYGVAA
Sbjct: 1  MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61 LGKLYRGDI 70
          L  L    +
Sbjct: 61 LACLVMAQV 69

[Close]

BLAST of Lcy11g007200 vs. NCBI nr
Match: XP_008451867.1 (PREDICTED: uncharacterized protein LOC103493027 [Cucumis melo] >KAA0040182.1 DUF1218 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 8.5e-21
Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1  MEKRRFGYALSLSIVVSLALVAFASCIAAELHRTKTKDLRLDGKLCYLPESQAFGYGVAA 60
          M K  FGYALSLSIVVSLAL+AF SC+AAELHRTKTKDL+LDGKLCYLPESQAFGYGVAA
Sbjct: 1  MGKHCFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61 LGKLYRGDI 70
          L  L    +
Sbjct: 61 LACLVMAQV 69

[Close]

BLAST of Lcy11g007200 vs. NCBI nr
Match: KAG6600430.1 (Protein MODIFYING WALL LIGNIN-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-20
Identity = 57/64 (89.06%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MEKRRFGYALSLSIVVSLALVAFASCIAAELHRTKTKDLRLDGKLCYLPESQAFGYGVAA 60
          MEKRRF YALSLSIVVS ALVA  SCIAAELHRTKTKDLRLDGKLCYLPESQAF YGVAA
Sbjct: 1  MEKRRFVYALSLSIVVSFALVAIVSCIAAELHRTKTKDLRLDGKLCYLPESQAFRYGVAA 60

Query: 61 LGKL 65
          L  L
Sbjct: 61 LACL 64

[Close]

BLAST of Lcy11g007200 vs. NCBI nr
Match: XP_023543619.1 (uncharacterized protein LOC111803449 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-20
Identity = 57/64 (89.06%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MEKRRFGYALSLSIVVSLALVAFASCIAAELHRTKTKDLRLDGKLCYLPESQAFGYGVAA 60
          MEKRRF YALSLSIVVS ALVA  SCIAAELHRTKTKDLRLDGKLCYLPESQAF YGVAA
Sbjct: 1  MEKRRFVYALSLSIVVSFALVAIVSCIAAELHRTKTKDLRLDGKLCYLPESQAFRYGVAA 60

Query: 61 LGKL 65
          L  L
Sbjct: 61 LACL 64

[Close]

BLAST of Lcy11g007200 vs. TAIR 10
Match: AT4G19370.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 51.2 bits (121), Expect = 7.4e-07
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 13 SIVVSLALVAFASCIAAELHRTKTKDLRLD-GKLCYLPESQAFGYGVAAL 62
          S+V SL LV+F +C AAE  RT+ +D+R D  + CY+P S AFG G AA+
Sbjct: 8  SVVFSLGLVSFITCFAAEFKRTQKEDIRWDTERNCYVPGSHAFGLGSAAV 57

[Close]

BLAST of Lcy11g007200 vs. TAIR 10
Match: AT1G31720.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 48.1 bits (113), Expect = 6.3e-06
Identity = 25/62 (40.32%), Postives = 34/62 (54.84%), Query Frame = 0


Query: 10 LSLSIVVSLALVAFASCIAAELHRTKT----------KDLRLDGKLCYLPESQAFGYGVA 62
          L    +    L AF  C++AE  + K           KDL+ DG+ CYLPE++AFG G+A
Sbjct: 17 LFFMFIFLFGLAAFFLCLSAEFQKAKALLRAQVFLKGKDLKWDGESCYLPENRAFGLGIA 76

The following BLAST results are available for this feature:

BLAST of Lcy11g007200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65708	1.0e-05	52.00	Protein MODIFYING WALL LIGNIN-2 OS=Arabidopsis thaliana OX=3702 GN=MWL2 PE=2 SV=...	[more]
A2RVU1	6.8e-05	46.15	Protein MODIFYING WALL LIGNIN-1 OS=Arabidopsis thaliana OX=3702 GN=MWL1 PE=1 SV=...	[more]

BLAST of Lcy11g007200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CY18	5.1e-40	70.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KYL9	4.8e-22	81.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056580 PE=4 SV=1	[more]
A0A5A7T9R1	4.1e-21	79.71	DUF1218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3BTM2	4.1e-21	79.71	uncharacterized protein LOC103493027 OS=Cucumis melo OX=3656 GN=LOC103493027 PE=...	[more]
A0A6J1FSJ4	9.1e-21	89.06	uncharacterized protein LOC111446907 OS=Cucurbita moschata OX=3662 GN=LOC1114469...	[more]

BLAST of Lcy11g007200 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16452.1	1.1e-39	70.00	uncharacterized protein E5676_scaffold21G002500 [Cucumis melo var. makuwa]	[more]
XP_011653242.1	1.0e-21	81.16	protein MODIFYING WALL LIGNIN-2 [Cucumis sativus] >KGN53467.1 hypothetical prote...	[more]
XP_008451867.1	8.5e-21	79.71	PREDICTED: uncharacterized protein LOC103493027 [Cucumis melo] >KAA0040182.1 DUF...	[more]
KAG6600430.1	1.9e-20	89.06	Protein MODIFYING WALL LIGNIN-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023543619.1	1.9e-20	89.06	uncharacterized protein LOC111803449 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy11g007200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19370.1	7.4e-07	52.00	Protein of unknown function (DUF1218)	[more]
AT1G31720.1	6.3e-06	40.32	Protein of unknown function (DUF1218)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31769:SF6	PROTEIN MODIFYING WALL LIGNIN-1	coord: 2..61
None	No IPR available	PANTHER	PTHR31769	OS07G0462200 PROTEIN-RELATED	coord: 2..61
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..26 score: 7.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g007200.1	Lcy11g007200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane