Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGGGAAAGAGTTATTCCTAAAAGGCTACCATTGGAGAGTGGAGAATGGGAAGTATATCGAGATTGATAAAGATCCTTGGATCAATAGAGCGAACGCCAAAACTCCTAATCTCATCAATGATGAGCTAAAGGGTAGCAAGGTTAAAAGCCTCATCGATGATAACAACAATTGGATTGAAGAAAAAGTGAGAGGCCATTTTAACCAAGAAGATGCTAATGACATCCTAAACATTCCCCTTGGGGATCCAAGCACTAAGGATGAGATTATTTGGAACCTTGACAAGAAAGGGATCTTCAAAGTAAAGAGTGCCTATCATTTGGCTCTTTCTTGTTCGTTAGACAGGGAAGCTTCTGTTTCAGACCCTAGTAAGCTTAAATCGGTTTGGAAGAGGCTGTGGAATATCAAAACGATTCCCAGGGCTAAAATATGCACTTGGAAATTTCTAAACGATATTCTTCCTAATATCCCCAATCTCCAAAAGAAAAACATTGATTATAATCCCTTATGCGGTCTTTGCAGGAAAAATAAGGAGTCTACCAGCCATACTTTCTGAGGATGCAAGGTAA
mRNA sequence
ATGTGGGGGAAAGAGTTATTCCTAAAAGGCTACCATTGGAGAGTGGAGAATGGGAAGTATATCGAGATTGATAAAGATCCTTGGATCAATAGAGCGAACGCCAAAACTCCTAATCTCATCAATGATGAGCTAAAGGGTAGCAAGGTTAAAAGCCTCATCGATGATAACAACAATTGGATTGAAGAAAAAGTGAGAGGCCATTTTAACCAAGAAGATGCTAATGACATCCTAAACATTCCCCTTGGGGATCCAAGCACTAAGGATGAGATTATTTGGAACCTTGACAAGAAAGGGATCTTCAAAGTAAAGAGTGCCTATCATTTGGCTCTTTCTTGTTCGTTAGACAGGGAAGCTTCTGTTTCAGACCCTAGAAAAATAAGGAGTCTACCAGCCATACTTTCTGAGGATGCAAGGTAA
Coding sequence (CDS)
ATGTGGGGGAAAGAGTTATTCCTAAAAGGCTACCATTGGAGAGTGGAGAATGGGAAGTATATCGAGATTGATAAAGATCCTTGGATCAATAGAGCGAACGCCAAAACTCCTAATCTCATCAATGATGAGCTAAAGGGTAGCAAGGTTAAAAGCCTCATCGATGATAACAACAATTGGATTGAAGAAAAAGTGAGAGGCCATTTTAACCAAGAAGATGCTAATGACATCCTAAACATTCCCCTTGGGGATCCAAGCACTAAGGATGAGATTATTTGGAACCTTGACAAGAAAGGGATCTTCAAAGTAAAGAGTGCCTATCATTTGGCTCTTTCTTGTTCGTTAGACAGGGAAGCTTCTGTTTCAGACCCTAGAAAAATAAGGAGTCTACCAGCCATACTTTCTGAGGATGCAAGGTAA
Protein sequence
MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWIEEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREASVSDPRKIRSLPAILSEDAR
Homology
BLAST of Lcy11g006660 vs. ExPASy TrEMBL
Match:
A0A6J1DRA0 (uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022423 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 3.7e-17
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 0
Query: 1 MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWI 60
+WG++LF KGY W+V NG I + DPW+ R +P + ++ V L++ W
Sbjct: 577 LWGRDLFKKGYRWKVGNGFSINLSSDPWLPRDGNFSPVFTHIHVRNFSVAWLMEGRGRWD 636
Query: 61 EEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSL 115
E KVR F +A+ IL PL DEIIW +DK GIF V+SAYHL + L
Sbjct: 637 EIKVRESFIVSEADIILQTPLPSQDKDDEIIWGMDKTGIFSVRSAYHLGIQLML 690
BLAST of Lcy11g006660 vs. ExPASy TrEMBL
Match:
A0A803QI38 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 94.7 bits (234), Expect = 3.1e-16
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 0
Query: 1 MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNL-INDELKGSKVKSLIDDNNNW 60
+WG++L ++G W+V NG I +DPWI K P+L +D+ KV ID++ W
Sbjct: 1328 IWGRDLLVRGLLWKVGNGCSIRTFQDPWI--PGMKYPSLRSSDQPPDDKVSFFIDNSGFW 1387
Query: 61 IEEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREAS 120
EK++ +F++ + IL IP+G P D +IW D GIF VKSAYH+A + S+ +S
Sbjct: 1388 DREKLQQYFDEYSVSTILKIPIGGPQKTDSLIWTQDNSGIFSVKSAYHIANNTSMPPSSS 1447
Query: 121 VSDPRK 126
S K
Sbjct: 1448 DSSLSK 1451
BLAST of Lcy11g006660 vs. ExPASy TrEMBL
Match:
A0A1S8AC01 (Ribonuclease H-like superfamily protein OS=Citrus limon OX=2708 PE=4 SV=1)
HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = 0
Query: 1 MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWI 60
+WG+++ L G WR+ G ++I K WI R + P + S V LIDD+N W
Sbjct: 108 IWGRQVILAGSRWRIGKGDKVQIYKASWIPRPSTFRPTSRPTLPENSYVSMLIDDDNQWD 167
Query: 61 EEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLAL 111
E K+ HF++ DA+ I+++PL D+I+W+ DKKG + VKS Y +AL
Sbjct: 168 EMKIYCHFDKLDADRIVSMPLPRQPKDDQILWHYDKKGRYSVKSGYQVAL 217
BLAST of Lcy11g006660 vs. ExPASy TrEMBL
Match:
C7J4L5 (Os07g0501200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0501200 PE=4 SV=1)
HSP 1 Score: 88.6 bits (218), Expect = 2.2e-14
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = 0
Query: 2 WGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWIE 61
+G EL KG WRV NG I I +DPW+ R ++ P + V L++DN W
Sbjct: 154 YGLELLKKGIIWRVGNGHSIRIWRDPWLPRDFSRRPITRKGNCRIKWVPDLLNDNGEWDL 213
Query: 62 EKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREASVS 121
E+++ HFNQ D + IL I D + W+ DK GIF V+SAYHLA+S + +S S
Sbjct: 214 ERIQQHFNQIDTDIILKIRPSRSQEADFVAWHPDKHGIFSVRSAYHLAVSLANVNSSSSS 273
BLAST of Lcy11g006660 vs. ExPASy TrEMBL
Match:
Q8S5K1 (Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24.23 PE=4 SV=2)
HSP 1 Score: 88.2 bits (217), Expect = 2.9e-14
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = 0
Query: 2 WGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWIE 61
+G EL KG WR+ NGK + + +DPWI R+ ++ P + V LID + +W
Sbjct: 1483 YGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRPISAKRNCRLRWVSDLIDQSGSWDT 1542
Query: 62 EKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREASVS 121
+K+ HF DA ILNI L D I W+ DK G F V+SAYHLA++ + E S S
Sbjct: 1543 DKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSS 1602
BLAST of Lcy11g006660 vs. NCBI nr
Match:
XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia])
HSP 1 Score: 97.8 bits (242), Expect = 7.6e-17
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 0
Query: 1 MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWI 60
+WG++LF KGY W+V NG I + DPW+ R +P + ++ V L++ W
Sbjct: 577 LWGRDLFKKGYRWKVGNGFSINLSSDPWLPRDGNFSPVFTHIHVRNFSVAWLMEGRGRWD 636
Query: 61 EEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSL 115
E KVR F +A+ IL PL DEIIW +DK GIF V+SAYHL + L
Sbjct: 637 EIKVRESFIVSEADIILQTPLPSQDKDDEIIWGMDKTGIFSVRSAYHLGIQLML 690
BLAST of Lcy11g006660 vs. NCBI nr
Match:
XP_015388020.1 (uncharacterized protein LOC107177951 [Citrus sinensis])
HSP 1 Score: 93.6 bits (231), Expect = 1.4e-15
Identity = 45/125 (36.00%), Postives = 69/125 (55.20%), Query Frame = 0
Query: 1 MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWI 60
+WG+E+ KG WR+ +GK +++ + W+ R P + V LID+++ W
Sbjct: 688 LWGREVIHKGLRWRIRDGKLVKVYQSGWLPRPETFKPISPPSLPLDTTVSVLIDEDHCWR 747
Query: 61 EEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREASV 120
++ +R HF+QEDA IL IPL + D+++W+ DKKG + VKS Y LAL S
Sbjct: 748 DDAIRKHFHQEDAAQILKIPLPRQPSLDQVLWHYDKKGNYSVKSGYQLALQMKFPNRPSS 807
Query: 121 SDPRK 126
S K
Sbjct: 808 SKEGK 812
BLAST of Lcy11g006660 vs. NCBI nr
Match:
XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis])
HSP 1 Score: 91.3 bits (225), Expect = 7.1e-15
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 0
Query: 1 MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWI 60
MWG+++ KG WR+ NGK I I D W+ R P S V LI +N W
Sbjct: 947 MWGRQVIKKGMRWRIGNGKKIAIFSDNWLPRPETFRPIFPLSLPVSSVVADLIKADNQWD 1006
Query: 61 EEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREASV 120
E K+R HF D +IL IPL +DE++W+ DK+G + VKS Y LAL S
Sbjct: 1007 EIKLRQHFLDVDTAEILKIPLPAEKAEDEVLWHYDKRGNYSVKSGYQLALRSKFPDSTSC 1066
Query: 121 SD 123
++
Sbjct: 1067 TE 1068
BLAST of Lcy11g006660 vs. NCBI nr
Match:
XP_030494695.1 (uncharacterized protein LOC115710475 [Cannabis sativa])
HSP 1 Score: 88.6 bits (218), Expect = 4.6e-14
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = 0
Query: 1 MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKG-SKVKSLIDDNNNW 60
+WG++L ++G W+V NG I +DPWI K P L +++L KV ID+N W
Sbjct: 450 LWGRDLLIRGLLWKVGNGCSIRTFQDPWI--LGIKFPCLRSNDLPPVDKVSFFIDNNGFW 509
Query: 61 IEEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREAS 120
K+ +F+ IL +P+G D IIWN + GIF VKSAYH+A + SL +S
Sbjct: 510 DRYKLHQYFDDYSVLSILKVPIGGLHKADSIIWNQENSGIFSVKSAYHIANNASLPPSSS 569
Query: 121 VS 122
S
Sbjct: 570 NS 569
BLAST of Lcy11g006660 vs. NCBI nr
Match:
XP_030479238.1 (uncharacterized protein LOC115696478 [Cannabis sativa])
HSP 1 Score: 88.6 bits (218), Expect = 4.6e-14
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = 0
Query: 1 MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDEL-KGSKVKSLIDDNNNW 60
+WG++L ++G W+V NG I +DPWI K P L + +L KV ID++ W
Sbjct: 819 IWGRDLLIRGLLWKVGNGCSIRTFQDPWI--PGIKFPCLRSSDLPPADKVSFFIDNSGFW 878
Query: 61 IEEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREAS 120
+K++ +F++ IL IP+G D +IWN + GIF VKSAYH+A + SL +S
Sbjct: 879 DRKKLQQYFDEYSVLTILKIPIGGLQKADSLIWNQENSGIFSVKSAYHIANNASLPPSSS 938
Query: 121 VS 122
S
Sbjct: 939 DS 938
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DRA0 | 3.7e-17 | 41.23 | uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A803QI38 | 3.1e-16 | 38.89 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A1S8AC01 | 1.3e-14 | 39.09 | Ribonuclease H-like superfamily protein OS=Citrus limon OX=2708 PE=4 SV=1 | [more] |
C7J4L5 | 2.2e-14 | 40.00 | Os07g0501200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0501200 PE... | [more] |
Q8S5K1 | 2.9e-14 | 40.00 | Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24.... | [more] |
Match Name | E-value | Identity | Description | |