Lcy11g006660 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g006660
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribonuclease H-like superfamily protein
Location	Chr11: 6751385 .. 6751955 (+)
RNA-Seq Expression	Lcy11g006660
Synteny	Lcy11g006660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGGGAAAGAGTTATTCCTAAAAGGCTACCATTGGAGAGTGGAGAATGGGAAGTATATCGAGATTGATAAAGATCCTTGGATCAATAGAGCGAACGCCAAAACTCCTAATCTCATCAATGATGAGCTAAAGGGTAGCAAGGTTAAAAGCCTCATCGATGATAACAACAATTGGATTGAAGAAAAAGTGAGAGGCCATTTTAACCAAGAAGATGCTAATGACATCCTAAACATTCCCCTTGGGGATCCAAGCACTAAGGATGAGATTATTTGGAACCTTGACAAGAAAGGGATCTTCAAAGTAAAGAGTGCCTATCATTTGGCTCTTTCTTGTTCGTTAGACAGGGAAGCTTCTGTTTCAGACCCTAGTAAGCTTAAATCGGTTTGGAAGAGGCTGTGGAATATCAAAACGATTCCCAGGGCTAAAATATGCACTTGGAAATTTCTAAACGATATTCTTCCTAATATCCCCAATCTCCAAAAGAAAAACATTGATTATAATCCCTTATGCGGTCTTTGCAGGAAAAATAAGGAGTCTACCAGCCATACTTTCTGAGGATGCAAGGTAA

mRNA sequence

ATGTGGGGGAAAGAGTTATTCCTAAAAGGCTACCATTGGAGAGTGGAGAATGGGAAGTATATCGAGATTGATAAAGATCCTTGGATCAATAGAGCGAACGCCAAAACTCCTAATCTCATCAATGATGAGCTAAAGGGTAGCAAGGTTAAAAGCCTCATCGATGATAACAACAATTGGATTGAAGAAAAAGTGAGAGGCCATTTTAACCAAGAAGATGCTAATGACATCCTAAACATTCCCCTTGGGGATCCAAGCACTAAGGATGAGATTATTTGGAACCTTGACAAGAAAGGGATCTTCAAAGTAAAGAGTGCCTATCATTTGGCTCTTTCTTGTTCGTTAGACAGGGAAGCTTCTGTTTCAGACCCTAGAAAAATAAGGAGTCTACCAGCCATACTTTCTGAGGATGCAAGGTAA

Coding sequence (CDS)

ATGTGGGGGAAAGAGTTATTCCTAAAAGGCTACCATTGGAGAGTGGAGAATGGGAAGTATATCGAGATTGATAAAGATCCTTGGATCAATAGAGCGAACGCCAAAACTCCTAATCTCATCAATGATGAGCTAAAGGGTAGCAAGGTTAAAAGCCTCATCGATGATAACAACAATTGGATTGAAGAAAAAGTGAGAGGCCATTTTAACCAAGAAGATGCTAATGACATCCTAAACATTCCCCTTGGGGATCCAAGCACTAAGGATGAGATTATTTGGAACCTTGACAAGAAAGGGATCTTCAAAGTAAAGAGTGCCTATCATTTGGCTCTTTCTTGTTCGTTAGACAGGGAAGCTTCTGTTTCAGACCCTAGAAAAATAAGGAGTCTACCAGCCATACTTTCTGAGGATGCAAGGTAA

Protein sequence

MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWIEEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREASVSDPRKIRSLPAILSEDAR

Homology

[Close]

BLAST of Lcy11g006660 vs. ExPASy TrEMBL
Match: A0A6J1DRA0 (uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022423 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.7e-17
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 1   MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWI 60
           +WG++LF KGY W+V NG  I +  DPW+ R    +P   +  ++   V  L++    W 
Sbjct: 577 LWGRDLFKKGYRWKVGNGFSINLSSDPWLPRDGNFSPVFTHIHVRNFSVAWLMEGRGRWD 636

Query: 61  EEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSL 115
           E KVR  F   +A+ IL  PL      DEIIW +DK GIF V+SAYHL +   L
Sbjct: 637 EIKVRESFIVSEADIILQTPLPSQDKDDEIIWGMDKTGIFSVRSAYHLGIQLML 690

[Close]

BLAST of Lcy11g006660 vs. ExPASy TrEMBL
Match: A0A803QI38 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.1e-16
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 0


Query: 1    MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNL-INDELKGSKVKSLIDDNNNW 60
            +WG++L ++G  W+V NG  I   +DPWI     K P+L  +D+    KV   ID++  W
Sbjct: 1328 IWGRDLLVRGLLWKVGNGCSIRTFQDPWI--PGMKYPSLRSSDQPPDDKVSFFIDNSGFW 1387

Query: 61   IEEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREAS 120
              EK++ +F++   + IL IP+G P   D +IW  D  GIF VKSAYH+A + S+   +S
Sbjct: 1388 DREKLQQYFDEYSVSTILKIPIGGPQKTDSLIWTQDNSGIFSVKSAYHIANNTSMPPSSS 1447

Query: 121  VSDPRK 126
             S   K
Sbjct: 1448 DSSLSK 1451

[Close]

BLAST of Lcy11g006660 vs. ExPASy TrEMBL
Match: A0A1S8AC01 (Ribonuclease H-like superfamily protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 1   MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWI 60
           +WG+++ L G  WR+  G  ++I K  WI R +   P       + S V  LIDD+N W 
Sbjct: 108 IWGRQVILAGSRWRIGKGDKVQIYKASWIPRPSTFRPTSRPTLPENSYVSMLIDDDNQWD 167

Query: 61  EEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLAL 111
           E K+  HF++ DA+ I+++PL      D+I+W+ DKKG + VKS Y +AL
Sbjct: 168 EMKIYCHFDKLDADRIVSMPLPRQPKDDQILWHYDKKGRYSVKSGYQVAL 217

[Close]

BLAST of Lcy11g006660 vs. ExPASy TrEMBL
Match: C7J4L5 (Os07g0501200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0501200 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.2e-14
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = 0


Query: 2   WGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWIE 61
           +G EL  KG  WRV NG  I I +DPW+ R  ++ P       +   V  L++DN  W  
Sbjct: 154 YGLELLKKGIIWRVGNGHSIRIWRDPWLPRDFSRRPITRKGNCRIKWVPDLLNDNGEWDL 213

Query: 62  EKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREASVS 121
           E+++ HFNQ D + IL I        D + W+ DK GIF V+SAYHLA+S +    +S S
Sbjct: 214 ERIQQHFNQIDTDIILKIRPSRSQEADFVAWHPDKHGIFSVRSAYHLAVSLANVNSSSSS 273

[Close]

BLAST of Lcy11g006660 vs. ExPASy TrEMBL
Match: Q8S5K1 (Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24.23 PE=4 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 2.9e-14
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = 0


Query: 2    WGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWIE 61
            +G EL  KG  WR+ NGK + + +DPWI R+ ++ P       +   V  LID + +W  
Sbjct: 1483 YGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRPISAKRNCRLRWVSDLIDQSGSWDT 1542

Query: 62   EKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREASVS 121
            +K+  HF   DA  ILNI L      D I W+ DK G F V+SAYHLA++ +   E S S
Sbjct: 1543 DKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSS 1602

[Close]

BLAST of Lcy11g006660 vs. NCBI nr
Match: XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 7.6e-17
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 1   MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWI 60
           +WG++LF KGY W+V NG  I +  DPW+ R    +P   +  ++   V  L++    W 
Sbjct: 577 LWGRDLFKKGYRWKVGNGFSINLSSDPWLPRDGNFSPVFTHIHVRNFSVAWLMEGRGRWD 636

Query: 61  EEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSL 115
           E KVR  F   +A+ IL  PL      DEIIW +DK GIF V+SAYHL +   L
Sbjct: 637 EIKVRESFIVSEADIILQTPLPSQDKDDEIIWGMDKTGIFSVRSAYHLGIQLML 690

[Close]

BLAST of Lcy11g006660 vs. NCBI nr
Match: XP_015388020.1 (uncharacterized protein LOC107177951 [Citrus sinensis])

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-15
Identity = 45/125 (36.00%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 1   MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWI 60
           +WG+E+  KG  WR+ +GK +++ +  W+ R     P         + V  LID+++ W 
Sbjct: 688 LWGREVIHKGLRWRIRDGKLVKVYQSGWLPRPETFKPISPPSLPLDTTVSVLIDEDHCWR 747

Query: 61  EEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREASV 120
           ++ +R HF+QEDA  IL IPL    + D+++W+ DKKG + VKS Y LAL        S 
Sbjct: 748 DDAIRKHFHQEDAAQILKIPLPRQPSLDQVLWHYDKKGNYSVKSGYQLALQMKFPNRPSS 807

Query: 121 SDPRK 126
           S   K
Sbjct: 808 SKEGK 812

[Close]

BLAST of Lcy11g006660 vs. NCBI nr
Match: XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis])

HSP 1 Score: 91.3 bits (225), Expect = 7.1e-15
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 0


Query: 1    MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKGSKVKSLIDDNNNWI 60
            MWG+++  KG  WR+ NGK I I  D W+ R     P         S V  LI  +N W 
Sbjct: 947  MWGRQVIKKGMRWRIGNGKKIAIFSDNWLPRPETFRPIFPLSLPVSSVVADLIKADNQWD 1006

Query: 61   EEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREASV 120
            E K+R HF   D  +IL IPL     +DE++W+ DK+G + VKS Y LAL        S 
Sbjct: 1007 EIKLRQHFLDVDTAEILKIPLPAEKAEDEVLWHYDKRGNYSVKSGYQLALRSKFPDSTSC 1066

Query: 121  SD 123
            ++
Sbjct: 1067 TE 1068

[Close]

BLAST of Lcy11g006660 vs. NCBI nr
Match: XP_030494695.1 (uncharacterized protein LOC115710475 [Cannabis sativa])

HSP 1 Score: 88.6 bits (218), Expect = 4.6e-14
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = 0


Query: 1   MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDELKG-SKVKSLIDDNNNW 60
           +WG++L ++G  W+V NG  I   +DPWI     K P L +++L    KV   ID+N  W
Sbjct: 450 LWGRDLLIRGLLWKVGNGCSIRTFQDPWI--LGIKFPCLRSNDLPPVDKVSFFIDNNGFW 509

Query: 61  IEEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREAS 120
              K+  +F+      IL +P+G     D IIWN +  GIF VKSAYH+A + SL   +S
Sbjct: 510 DRYKLHQYFDDYSVLSILKVPIGGLHKADSIIWNQENSGIFSVKSAYHIANNASLPPSSS 569

Query: 121 VS 122
            S
Sbjct: 570 NS 569

[Close]

BLAST of Lcy11g006660 vs. NCBI nr
Match: XP_030479238.1 (uncharacterized protein LOC115696478 [Cannabis sativa])

HSP 1 Score: 88.6 bits (218), Expect = 4.6e-14
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = 0


Query: 1   MWGKELFLKGYHWRVENGKYIEIDKDPWINRANAKTPNLINDEL-KGSKVKSLIDDNNNW 60
           +WG++L ++G  W+V NG  I   +DPWI     K P L + +L    KV   ID++  W
Sbjct: 819 IWGRDLLIRGLLWKVGNGCSIRTFQDPWI--PGIKFPCLRSSDLPPADKVSFFIDNSGFW 878

Query: 61  IEEKVRGHFNQEDANDILNIPLGDPSTKDEIIWNLDKKGIFKVKSAYHLALSCSLDREAS 120
             +K++ +F++     IL IP+G     D +IWN +  GIF VKSAYH+A + SL   +S
Sbjct: 879 DRKKLQQYFDEYSVLTILKIPIGGLQKADSLIWNQENSGIFSVKSAYHIANNASLPPSSS 938

Query: 121 VS 122
            S
Sbjct: 939 DS 938

The following BLAST results are available for this feature:

BLAST of Lcy11g006660 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g006660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRA0	3.7e-17	41.23	uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A803QI38	3.1e-16	38.89	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A1S8AC01	1.3e-14	39.09	Ribonuclease H-like superfamily protein OS=Citrus limon OX=2708 PE=4 SV=1	[more]
C7J4L5	2.2e-14	40.00	Os07g0501200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0501200 PE...	[more]
Q8S5K1	2.9e-14	40.00	Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24....	[more]

BLAST of Lcy11g006660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155286.1	7.6e-17	41.23	uncharacterized protein LOC111022423 [Momordica charantia]	[more]
XP_015388020.1	1.4e-15	36.00	uncharacterized protein LOC107177951 [Citrus sinensis]	[more]
XP_024950112.1	7.1e-15	38.52	uncharacterized protein LOC112496847 [Citrus sinensis]	[more]
XP_030494695.1	4.6e-14	39.34	uncharacterized protein LOC115710475 [Cannabis sativa]	[more]
XP_030479238.1	4.6e-14	38.52	uncharacterized protein LOC115696478 [Cannabis sativa]	[more]

BLAST of Lcy11g006660 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g006660.1	Lcy11g006660.1	mRNA