Lcy11g004580 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g004580
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr11: 4482856 .. 4483158 (+)
RNA-Seq Expression	Lcy11g004580
Synteny	Lcy11g004580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAAGAGAGAGATGGAGATGAAAAACAAGGTTGCTTTGGTGGCTATGGTGGTTGTAATGGTGGTCATTGCTCAATCCGCCACCGCCATCGCCGCCGTGGACGAGGCGATTCAGCTCACCTCCGACGCCGGTACACCGAGAGTCTGTCCTGCTACGATCTTGCCATGCAAAACTGACTCAGAGTGCTCTCCATGCCGCTGCAGTGATAATGGCTCCTGCGTTTGAAAACAAAACAAGAAGATAATAAAGAACAGATTGTCCTATAAATGTCTATTCAGCCATGGCGTTTTTTTTTTTTTTTT

mRNA sequence

GGAAAAGAGAGAGATGGAGATGAAAAACAAGGTTGCTTTGGTGGCTATGGTGGTTGTAATGGTGGTCATTGCTCAATCCGCCACCGCCATCGCCGCCGTGGACGAGGCGATTCAGCTCACCTCCGACGCCGGTACACCGAGAGTCTGTCCTGCTACGATCTTGCCATGCAAAACTGACTCAGAGTGCTCTCCATGCCGCTGCAGTGATAATGGCTCCTGCGTTTGAAAACAAAACAAGAAGATAATAAAGAACAGATTGTCCTATAAATGTCTATTCAGCCATGGCGTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGAGATGAAAAACAAGGTTGCTTTGGTGGCTATGGTGGTTGTAATGGTGGTCATTGCTCAATCCGCCACCGCCATCGCCGCCGTGGACGAGGCGATTCAGCTCACCTCCGACGCCGGTACACCGAGAGTCTGTCCTGCTACGATCTTGCCATGCAAAACTGACTCAGAGTGCTCTCCATGCCGCTGCAGTGATAATGGCTCCTGCGTTTGA

Protein sequence

MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGTPRVCPATILPCKTDSECSPCRCSDNGSCV

Homology

[Close]

BLAST of Lcy11g004580 vs. ExPASy TrEMBL
Match: A0A5A7TRY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00670 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGTPRVCPATILPCKTDSECSP 60
          MEMKNK ALVAMVV MVV+AQS T I A DE I+L+    T RVCPATILPCKTDSECSP
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIELSGGENTARVCPATILPCKTDSECSP 60

Query: 61 CRCS-DNGSCV 71
          C C+  +GSC+
Sbjct: 61 CICNLQSGSCI 70

[Close]

BLAST of Lcy11g004580 vs. ExPASy TrEMBL
Match: A0A5D3E1Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00670 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGTPRVCPATILPCKTDSECSP 60
          MEMKNK ALVAMVV MVV+AQS T I A DE I+++    T RVCPATILPCKTDSECSP
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEVSGGENTARVCPATILPCKTDSECSP 60

Query: 61 CRCS-DNGSCV 71
          C C+  +GSC+
Sbjct: 61 CICNLQSGSCI 70

[Close]

BLAST of Lcy11g004580 vs. ExPASy TrEMBL
Match: A0A0A0KY39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.8e-13
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGT--------PRVCPATILPC 60
          MEMKNKVALVAMVVVMVV+ +SAT  AA+DE I+L ++           PRVCP  ILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDSECSPCRCSDNGSCV 71
          KTDSECSPC C +NGSC+
Sbjct: 61 KTDSECSPCYC-NNGSCI 77

[Close]

BLAST of Lcy11g004580 vs. ExPASy TrEMBL
Match: A0A0A0KWE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGTPRVCPATILPCKTDSECSP 60
          MEMKNK ALVAMVV MVV+AQS T I A DE I+L+    T RVCPAT+LPC+TDSECSP
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIELSGGENTARVCPATLLPCETDSECSP 60

Query: 61 CRCS-DNGSCV 71
          C C+  +G+CV
Sbjct: 61 CICNVKSGACV 70

[Close]

BLAST of Lcy11g004580 vs. NCBI nr
Match: KAA0044341.1 (hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGTPRVCPATILPCKTDSECSP 60
          MEMKNK ALVAMVV MVV+AQS T I A DE I+L+    T RVCPATILPCKTDSECSP
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIELSGGENTARVCPATILPCKTDSECSP 60

Query: 61 CRCS-DNGSCV 71
          C C+  +GSC+
Sbjct: 61 CICNLQSGSCI 70

[Close]

BLAST of Lcy11g004580 vs. NCBI nr
Match: TYK29470.1 (hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 5.8e-13
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGTPRVCPATILPCKTDSECSP 60
          MEMKNK ALVAMVV MVV+AQS T I A DE I+++    T RVCPATILPCKTDSECSP
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEVSGGENTARVCPATILPCKTDSECSP 60

Query: 61 CRCS-DNGSCV 71
          C C+  +GSC+
Sbjct: 61 CICNLQSGSCI 70

[Close]

BLAST of Lcy11g004580 vs. NCBI nr
Match: KGN52766.1 (hypothetical protein Csa_015422 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 9.9e-13
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGT--------PRVCPATILPC 60
          MEMKNKVALVAMVVVMVV+ +SAT  AA+DE I+L ++           PRVCP  ILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDSECSPCRCSDNGSCV 71
          KTDSECSPC C +NGSC+
Sbjct: 61 KTDSECSPCYC-NNGSCI 77

[Close]

BLAST of Lcy11g004580 vs. NCBI nr
Match: KGN52767.1 (hypothetical protein Csa_015168 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 2.9e-12
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGTPRVCPATILPCKTDSECSP 60
          MEMKNK ALVAMVV MVV+AQS T I A DE I+L+    T RVCPAT+LPC+TDSECSP
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIELSGGENTARVCPATLLPCETDSECSP 60

Query: 61 CRCS-DNGSCV 71
          C C+  +G+CV
Sbjct: 61 CICNVKSGACV 70

The following BLAST results are available for this feature:

BLAST of Lcy11g004580 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g004580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRY5	1.3e-13	70.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E1Q5	2.8e-13	69.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KY39	4.8e-13	64.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1	[more]
A0A0A0KWE9	1.4e-12	67.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1	[more]

BLAST of Lcy11g004580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044341.1	2.6e-13	70.42	hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa]	[more]
TYK29470.1	5.8e-13	69.01	hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa]	[more]
KGN52766.1	9.9e-13	64.10	hypothetical protein Csa_015422 [Cucumis sativus]	[more]
KGN52767.1	2.9e-12	67.61	hypothetical protein Csa_015168 [Cucumis sativus]	[more]

BLAST of Lcy11g004580 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	4.10.75.20		coord: 20..69 e-value: 4.4E-5 score: 25.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g004580.1	Lcy11g004580.1	mRNA