Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTTGGCCATTCTTCTTCTCAACAATGGCAGCTCGTCCCTCCGCCGTTCTCGGCTTCGTGCTCGTGGCGTTGCTGCTCGTTTGCATCGCTAATGCGCACGAGGGTCACGAGCATGGCGCTCCATCCTCCGAGCCTGCTGCCGCTCCATCGCCACCGCATAACTCCGCGGTCATGAACAGCTTTTCGTGCTGTTGGTCTATGGCTGTGGCCATGGTGGCTGCTTCTTGGACGTTGTTTTGATTTTGTGGGAAATGCTATTTTAATTTAATGTTGTTTGAACTTCAAATTCCTTGATGAAGTTCATATCCAAAAATTTGTTTAATTATTGTGCGTATTTTTGCGTTGTACCTCCCTGCTTTGAGAGTGTTTTTTCTTCGGTCATCTCGATTAGTAAAATAATGTCTATTTTTGGGAGATTCGAATTATAGACCTCCTCGTGATTAGTACAACTTTACGTCTGAGCTATGCTCTTGTTGGCTTTGAAATATTAATATTGTCT
mRNA sequence
TCTTTGGCCATTCTTCTTCTCAACAATGGCAGCTCGTCCCTCCGCCGTTCTCGGCTTCGTGCTCGTGGCGTTGCTGCTCGTTTGCATCGCTAATGCGCACGAGGGTCACGAGCATGGCGCTCCATCCTCCGAGCCTGCTGCCGCTCCATCGCCACCGCATAACTCCGCGGTCATGAACAGCTTTTCGTGCTGTTGGTCTATGGCTGTGGCCATGGTGGCTGCTTCTTGGACGTTGTTTTGATTTTGTGGGAAATGCTATTTTAATTTAATGTTGTTTGAACTTCAAATTCCTTGATGAAGTTCATATCCAAAAATTTGTTTAATTATTGTGCGTATTTTTGCGTTGTACCTCCCTGCTTTGAGAGTGTTTTTTCTTCGGTCATCTCGATTAGTAAAATAATGTCTATTTTTGGGAGATTCGAATTATAGACCTCCTCGTGATTAGTACAACTTTACGTCTGAGCTATGCTCTTGTTGGCTTTGAAATATTAATATTGTCT
Coding sequence (CDS)
ATGGCAGCTCGTCCCTCCGCCGTTCTCGGCTTCGTGCTCGTGGCGTTGCTGCTCGTTTGCATCGCTAATGCGCACGAGGGTCACGAGCATGGCGCTCCATCCTCCGAGCCTGCTGCCGCTCCATCGCCACCGCATAACTCCGCGGTCATGAACAGCTTTTCGTGCTGTTGGTCTATGGCTGTGGCCATGGTGGCTGCTTCTTGGACGTTGTTTTGA
Protein sequence
MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMAVAMVAASWTLF
Homology
BLAST of Lcy11g003730 vs. ExPASy TrEMBL
Match:
A0A0A0KVS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111600 PE=4 SV=1)
HSP 1 Score: 87.0 bits (214), Expect = 3.4e-14
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 0
Query: 1 MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMA 60
MAA PSAVL VLVALLL+C+ANAHEGH H PSSE AP P H++A++NS S WSMA
Sbjct: 1 MAAPPSAVLSVVLVALLLICVANAHEGHAH-PPSSEHHLAPPPQHSAAIINSLSYFWSMA 60
Query: 61 VAMVAASWTL 71
+AMVAASW +
Sbjct: 61 MAMVAASWII 69
BLAST of Lcy11g003730 vs. ExPASy TrEMBL
Match:
A0A5D3E2A2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00020 PE=4 SV=1)
HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 0
Query: 1 MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMA 60
MAARPSAVL +LV LLL+ + NAHEGH H PSSE AP P HN+A+MNS S WSMA
Sbjct: 1 MAARPSAVLSVLLVGLLLISVVNAHEGHAH-PPSSEHHVAPPPQHNAAIMNSLSYFWSMA 60
Query: 61 VAMVAASWTLF 72
+AMVAAS T+F
Sbjct: 61 MAMVAASSTIF 70
BLAST of Lcy11g003730 vs. ExPASy TrEMBL
Match:
A0A5A7V2Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00260 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 6.3e-13
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 0
Query: 1 MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMA 60
MAARPSAVL +LV LLL+ + NAHEGH H PSSE AP P HN+A++NS S WSMA
Sbjct: 1 MAARPSAVLSVLLVGLLLISVVNAHEGHAH-PPSSEHHVAPPPQHNAAIVNSLSYFWSMA 60
Query: 61 VAMVAASWTLF 72
+AMVAAS T+F
Sbjct: 61 MAMVAASSTIF 70
BLAST of Lcy11g003730 vs. NCBI nr
Match:
KAG7030901.1 (Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 49/71 (69.01%), Postives = 54/71 (76.06%), Query Frame = 0
Query: 1 MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMA 60
MAARPSAVL FVL LLLV +AN HEGH H PSSEP A+P P N+A+MNSFS WSM
Sbjct: 689 MAARPSAVLSFVLAVLLLVYVANGHEGHVH-PPSSEPTASPPPGVNAAIMNSFSYSWSMV 748
Query: 61 VAMVAASWTLF 72
+AMVA SW LF
Sbjct: 749 MAMVATSWMLF 758
BLAST of Lcy11g003730 vs. NCBI nr
Match:
KGN53725.1 (hypothetical protein Csa_014716 [Cucumis sativus])
HSP 1 Score: 87.0 bits (214), Expect = 6.9e-14
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 0
Query: 1 MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMA 60
MAA PSAVL VLVALLL+C+ANAHEGH H PSSE AP P H++A++NS S WSMA
Sbjct: 1 MAAPPSAVLSVVLVALLLICVANAHEGHAH-PPSSEHHLAPPPQHSAAIINSLSYFWSMA 60
Query: 61 VAMVAASWTL 71
+AMVAASW +
Sbjct: 61 MAMVAASWII 69
BLAST of Lcy11g003730 vs. NCBI nr
Match:
TYK29918.1 (hypothetical protein E5676_scaffold652G00020 [Cucumis melo var. makuwa])
HSP 1 Score: 84.3 bits (207), Expect = 4.5e-13
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 0
Query: 1 MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMA 60
MAARPSAVL +LV LLL+ + NAHEGH H PSSE AP P HN+A+MNS S WSMA
Sbjct: 1 MAARPSAVLSVLLVGLLLISVVNAHEGHAH-PPSSEHHVAPPPQHNAAIMNSLSYFWSMA 60
Query: 61 VAMVAASWTLF 72
+AMVAAS T+F
Sbjct: 61 MAMVAASSTIF 70
BLAST of Lcy11g003730 vs. NCBI nr
Match:
KAG6576850.1 (hypothetical protein SDJN03_24424, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 83.2 bits (204), Expect = 1.0e-12
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 0
Query: 1 MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSA-VMNSFSCCWSM 60
MAARPSAVL VLVALLLV +A AHEGH H PSS+P AP P HN+A +NS S WSM
Sbjct: 1 MAARPSAVLTVVLVALLLVSVAYAHEGHVH-PPSSDPHVAPPPEHNAATAVNSLSYFWSM 60
Query: 61 AVAMVAASWTLF 72
A+AMVA+SW LF
Sbjct: 61 AIAMVASSWMLF 71
BLAST of Lcy11g003730 vs. NCBI nr
Match:
KAA0061157.1 (hypothetical protein E6C27_scaffold753G00260 [Cucumis melo var. makuwa])
HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 0
Query: 1 MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMA 60
MAARPSAVL +LV LLL+ + NAHEGH H PSSE AP P HN+A++NS S WSMA
Sbjct: 1 MAARPSAVLSVLLVGLLLISVVNAHEGHAH-PPSSEHHVAPPPQHNAAIVNSLSYFWSMA 60
Query: 61 VAMVAASWTLF 72
+AMVAAS T+F
Sbjct: 61 MAMVAASSTIF 70
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KVS3 | 3.4e-14 | 67.14 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111600 PE=4 SV=1 | [more] |
| A0A5D3E2A2 | 2.2e-13 | 66.20 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7V2Q5 | 6.3e-13 | 64.79 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAG7030901.1 | 1.1e-14 | 69.01 | Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Cucurbita ar... | [more] |
| KGN53725.1 | 6.9e-14 | 67.14 | hypothetical protein Csa_014716 [Cucumis sativus] | [more] |
| TYK29918.1 | 4.5e-13 | 66.20 | hypothetical protein E5676_scaffold652G00020 [Cucumis melo var. makuwa] | [more] |
| KAG6576850.1 | 1.0e-12 | 68.06 | hypothetical protein SDJN03_24424, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAA0061157.1 | 1.3e-12 | 64.79 | hypothetical protein E6C27_scaffold753G00260 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
