Lcy11g003730 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g003730
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr11: 3675497 .. 3675996 (+)
RNA-Seq Expression	Lcy11g003730
Synteny	Lcy11g003730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTGGCCATTCTTCTTCTCAACAATGGCAGCTCGTCCCTCCGCCGTTCTCGGCTTCGTGCTCGTGGCGTTGCTGCTCGTTTGCATCGCTAATGCGCACGAGGGTCACGAGCATGGCGCTCCATCCTCCGAGCCTGCTGCCGCTCCATCGCCACCGCATAACTCCGCGGTCATGAACAGCTTTTCGTGCTGTTGGTCTATGGCTGTGGCCATGGTGGCTGCTTCTTGGACGTTGTTTTGATTTTGTGGGAAATGCTATTTTAATTTAATGTTGTTTGAACTTCAAATTCCTTGATGAAGTTCATATCCAAAAATTTGTTTAATTATTGTGCGTATTTTTGCGTTGTACCTCCCTGCTTTGAGAGTGTTTTTTCTTCGGTCATCTCGATTAGTAAAATAATGTCTATTTTTGGGAGATTCGAATTATAGACCTCCTCGTGATTAGTACAACTTTACGTCTGAGCTATGCTCTTGTTGGCTTTGAAATATTAATATTGTCT

mRNA sequence

TCTTTGGCCATTCTTCTTCTCAACAATGGCAGCTCGTCCCTCCGCCGTTCTCGGCTTCGTGCTCGTGGCGTTGCTGCTCGTTTGCATCGCTAATGCGCACGAGGGTCACGAGCATGGCGCTCCATCCTCCGAGCCTGCTGCCGCTCCATCGCCACCGCATAACTCCGCGGTCATGAACAGCTTTTCGTGCTGTTGGTCTATGGCTGTGGCCATGGTGGCTGCTTCTTGGACGTTGTTTTGATTTTGTGGGAAATGCTATTTTAATTTAATGTTGTTTGAACTTCAAATTCCTTGATGAAGTTCATATCCAAAAATTTGTTTAATTATTGTGCGTATTTTTGCGTTGTACCTCCCTGCTTTGAGAGTGTTTTTTCTTCGGTCATCTCGATTAGTAAAATAATGTCTATTTTTGGGAGATTCGAATTATAGACCTCCTCGTGATTAGTACAACTTTACGTCTGAGCTATGCTCTTGTTGGCTTTGAAATATTAATATTGTCT

Coding sequence (CDS)

ATGGCAGCTCGTCCCTCCGCCGTTCTCGGCTTCGTGCTCGTGGCGTTGCTGCTCGTTTGCATCGCTAATGCGCACGAGGGTCACGAGCATGGCGCTCCATCCTCCGAGCCTGCTGCCGCTCCATCGCCACCGCATAACTCCGCGGTCATGAACAGCTTTTCGTGCTGTTGGTCTATGGCTGTGGCCATGGTGGCTGCTTCTTGGACGTTGTTTTGA

Protein sequence

MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMAVAMVAASWTLF

Homology

[Close]

BLAST of Lcy11g003730 vs. ExPASy TrEMBL
Match: A0A0A0KVS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111600 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.4e-14
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 1  MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMA 60
          MAA PSAVL  VLVALLL+C+ANAHEGH H  PSSE   AP P H++A++NS S  WSMA
Sbjct: 1  MAAPPSAVLSVVLVALLLICVANAHEGHAH-PPSSEHHLAPPPQHSAAIINSLSYFWSMA 60

Query: 61 VAMVAASWTL 71
          +AMVAASW +
Sbjct: 61 MAMVAASWII 69

[Close]

BLAST of Lcy11g003730 vs. ExPASy TrEMBL
Match: A0A5D3E2A2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00020 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 1  MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMA 60
          MAARPSAVL  +LV LLL+ + NAHEGH H  PSSE   AP P HN+A+MNS S  WSMA
Sbjct: 1  MAARPSAVLSVLLVGLLLISVVNAHEGHAH-PPSSEHHVAPPPQHNAAIMNSLSYFWSMA 60

Query: 61 VAMVAASWTLF 72
          +AMVAAS T+F
Sbjct: 61 MAMVAASSTIF 70

[Close]

BLAST of Lcy11g003730 vs. ExPASy TrEMBL
Match: A0A5A7V2Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00260 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.3e-13
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 1  MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMA 60
          MAARPSAVL  +LV LLL+ + NAHEGH H  PSSE   AP P HN+A++NS S  WSMA
Sbjct: 1  MAARPSAVLSVLLVGLLLISVVNAHEGHAH-PPSSEHHVAPPPQHNAAIVNSLSYFWSMA 60

Query: 61 VAMVAASWTLF 72
          +AMVAAS T+F
Sbjct: 61 MAMVAASSTIF 70

[Close]

BLAST of Lcy11g003730 vs. NCBI nr
Match: KAG7030901.1 (Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 49/71 (69.01%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 1   MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMA 60
           MAARPSAVL FVL  LLLV +AN HEGH H  PSSEP A+P P  N+A+MNSFS  WSM 
Sbjct: 689 MAARPSAVLSFVLAVLLLVYVANGHEGHVH-PPSSEPTASPPPGVNAAIMNSFSYSWSMV 748

Query: 61  VAMVAASWTLF 72
           +AMVA SW LF
Sbjct: 749 MAMVATSWMLF 758

[Close]

BLAST of Lcy11g003730 vs. NCBI nr
Match: KGN53725.1 (hypothetical protein Csa_014716 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 6.9e-14
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 1  MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMA 60
          MAA PSAVL  VLVALLL+C+ANAHEGH H  PSSE   AP P H++A++NS S  WSMA
Sbjct: 1  MAAPPSAVLSVVLVALLLICVANAHEGHAH-PPSSEHHLAPPPQHSAAIINSLSYFWSMA 60

Query: 61 VAMVAASWTL 71
          +AMVAASW +
Sbjct: 61 MAMVAASWII 69

[Close]

BLAST of Lcy11g003730 vs. NCBI nr
Match: TYK29918.1 (hypothetical protein E5676_scaffold652G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 4.5e-13
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 1  MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMA 60
          MAARPSAVL  +LV LLL+ + NAHEGH H  PSSE   AP P HN+A+MNS S  WSMA
Sbjct: 1  MAARPSAVLSVLLVGLLLISVVNAHEGHAH-PPSSEHHVAPPPQHNAAIMNSLSYFWSMA 60

Query: 61 VAMVAASWTLF 72
          +AMVAAS T+F
Sbjct: 61 MAMVAASSTIF 70

[Close]

BLAST of Lcy11g003730 vs. NCBI nr
Match: KAG6576850.1 (hypothetical protein SDJN03_24424, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-12
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 1  MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSA-VMNSFSCCWSM 60
          MAARPSAVL  VLVALLLV +A AHEGH H  PSS+P  AP P HN+A  +NS S  WSM
Sbjct: 1  MAARPSAVLTVVLVALLLVSVAYAHEGHVH-PPSSDPHVAPPPEHNAATAVNSLSYFWSM 60

Query: 61 AVAMVAASWTLF 72
          A+AMVA+SW LF
Sbjct: 61 AIAMVASSWMLF 71

[Close]

BLAST of Lcy11g003730 vs. NCBI nr
Match: KAA0061157.1 (hypothetical protein E6C27_scaffold753G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 1  MAARPSAVLGFVLVALLLVCIANAHEGHEHGAPSSEPAAAPSPPHNSAVMNSFSCCWSMA 60
          MAARPSAVL  +LV LLL+ + NAHEGH H  PSSE   AP P HN+A++NS S  WSMA
Sbjct: 1  MAARPSAVLSVLLVGLLLISVVNAHEGHAH-PPSSEHHVAPPPQHNAAIVNSLSYFWSMA 60

Query: 61 VAMVAASWTLF 72
          +AMVAAS T+F
Sbjct: 61 MAMVAASSTIF 70

The following BLAST results are available for this feature:

BLAST of Lcy11g003730 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g003730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVS3	3.4e-14	67.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111600 PE=4 SV=1	[more]
A0A5D3E2A2	2.2e-13	66.20	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V2Q5	6.3e-13	64.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lcy11g003730 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030901.1	1.1e-14	69.01	Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Cucurbita ar...	[more]
KGN53725.1	6.9e-14	67.14	hypothetical protein Csa_014716 [Cucumis sativus]	[more]
TYK29918.1	4.5e-13	66.20	hypothetical protein E5676_scaffold652G00020 [Cucumis melo var. makuwa]	[more]
KAG6576850.1	1.0e-12	68.06	hypothetical protein SDJN03_24424, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0061157.1	1.3e-12	64.79	hypothetical protein E6C27_scaffold753G00260 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy11g003730 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g003730.1	Lcy11g003730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane