Lcy11g003120 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g003120
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	zinc finger CCCH domain-containing protein 54
Location	Chr11: 2996651 .. 2998039 (-)
RNA-Seq Expression	Lcy11g003120
Synteny	Lcy11g003120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTATTCCTCTTGAAACCAGAGCTCTCCTTTTCCCAACAATGGCGTTTCTCTCTCTAATTTCCCTTCATTTTCTCTCTCCTCTTCCTCAAGCCTTTATCTCACTCAGTTACCACAATTAAACACCAAACTTCTTCAAAAGAAATTAAAAAAAAAAAAACCCATTTCAAAATTTCTTTCCAATTCCCTTTGAAATTCCCCAAGTTTCAATTTTTTTTCATTGTTATATCAACCCATTTGTTCTTCTTACAGGTAAATTATATATATTTATATCTATAAAAGAACATGTCTTGATTTAAAAAAAAAAAAAAACTGTCATTATTTTTAGATTTTTCATAAACGAATAAAAAAAAATGTTTCAAGGGTTTGTTTTCAGCTTAAATGACGTGTACGGCCACGATATCTCCGCCGTGTCTCTGCCTGAATTCACCGTCAGCCGCTTAACGGAACATGTCGACGACACGGCGGTGTTCAGCTCCGACGAGTTTCGAATGTACGCTTACAAGATCCAACGGTGCCCAAGAACCCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACCGCCGTCGCCTGCCCGGCTTTCCGGACTGGCAGCTGCCCGAAGGGCGATTTTTGTGAATTCGCTCATGGCGTTTTCGAGTTCTGGCTCCACCCGGCCCGGTACCGGACCCGGGCCTGCAATGCGGGCCGGTTTTGCCAACGGAAAGTTTGCTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCGGAGACCAAACTGAAGTTTAATTTCAATGCTTACCGGCCGCGTGCGGTGGTGGCCGCCGTTGAAGGTACTGTGGAGAGGGAGAACGACGGCGTTCTGGAAACTCCGGGGAGGGAGAATGGCGGCGGCCGGCGGGGAAATGAAGGGAGTTATGGATTGGAGCCGTCGGAGTTGGAGTTGCCGCATATTGAATGGATATCGGAATTGTTGCAGTAAATAAAAATGGTATTTAAAAAAAAAAATTTGTAAAGATTGCTTTGATGCTCAAAGATTATCTTTCAATTGCTTGTTGGGATTGATTTTTTTTTTTTTACTTTTTTTCTTTGAGAAGTTTTTTTAAGGTGTTGATGAAAGTTATGTGTGATTAAGTTTTATGTTTAAATTGAAGAACTGTCCTGTTTGGTTGTATATATAAATGTGAAAGTTGGATGTGATTAATAAATTTTAAGTTTCTTTTTTTAATTTTTTGAGTTGAACAGGATTCGAATCTTTGACTTTTTCGCTAATAGTATATATTAATTACCACTAAACTATACTCACTTTGACAATAAATTTTAAGTTTGAGATAATGAACTTTTAAGGTTGTGTTTGGTTGAAAC

mRNA sequence

GTTTATTCCTCTTGAAACCAGAGCTCTCCTTTTCCCAACAATGGCGTTTCTCTCTCTAATTTCCCTTCATTTTCTCTCTCCTCTTCCTCAAGCCTTTATCTCACTCAGTTACCACAATTAAACACCAAACTTCTTCAAAAGAAATTAAAAAAAAAAAAACCCATTTCAAAATTTCTTTCCAATTCCCTTTGAAATTCCCCAAGTTTCAATTTTTTTTCATTGTTATATCAACCCATTTGTTCTTCTTACAGGTAAATTATATATATTTATATCTATAAAAGAACATGTCTTGATTTAAAAAAAAAAAAAAACTGTCATTATTTTTAGATTTTTCATAAACGAATAAAAAAAAATGTTTCAAGGGTTTGTTTTCAGCTTAAATGACGTGTACGGCCACGATATCTCCGCCGTGTCTCTGCCTGAATTCACCGTCAGCCGCTTAACGGAACATGTCGACGACACGGCGGTGTTCAGCTCCGACGAGTTTCGAATGTACGCTTACAAGATCCAACGGTGCCCAAGAACCCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACCGCCGTCGCCTGCCCGGCTTTCCGGACTGGCAGCTGCCCGAAGGGCGATTTTTGTGAATTCGCTCATGGCGTTTTCGAGTTCTGGCTCCACCCGGCCCGGTACCGGACCCGGGCCTGCAATGCGGGCCGGTTTTGCCAACGGAAAGTTTGCTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCGGAGACCAAACTGAAGTTTAATTTCAATGCTTACCGGCCGCGTGCGGTGGTGGCCGCCGTTGAAGGTACTGTGGAGAGGGAGAACGACGGCGTTCTGGAAACTCCGGGGAGGGAGAATGGCGGCGGCCGGCGGGGAAATGAAGGGAGTTATGGATTGGAGCCGTCGGAGTTGGAGTTGCCGCATATTGAATGGATATCGGAATTGTTGCAGTAAATAAAAATGGTATTTAAAAAAAAAAATTTGTAAAGATTGCTTTGATGCTCAAAGATTATCTTTCAATTGCTTGTTGGGATTGATTTTTTTTTTTTTACTTTTTTTCTTTGAGAAGTTTTTTTAAGGTGTTGATGAAAGTTATGTGTGATTAAGTTTTATGTTTAAATTGAAGAACTGTCCTGTTTGGTTGTATATATAAATGTGAAAGTTGGATGTGATTAATAAATTTTAAGTTTCTTTTTTTAATTTTTTGAGTTGAACAGGATTCGAATCTTTGACTTTTTCGCTAATAGTATATATTAATTACCACTAAACTATACTCACTTTGACAATAAATTTTAAGTTTGAGATAATGAACTTTTAAGGTTGTGTTTGGTTGAAAC

Coding sequence (CDS)

ATGTTTCAAGGGTTTGTTTTCAGCTTAAATGACGTGTACGGCCACGATATCTCCGCCGTGTCTCTGCCTGAATTCACCGTCAGCCGCTTAACGGAACATGTCGACGACACGGCGGTGTTCAGCTCCGACGAGTTTCGAATGTACGCTTACAAGATCCAACGGTGCCCAAGAACCCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACCGCCGTCGCCTGCCCGGCTTTCCGGACTGGCAGCTGCCCGAAGGGCGATTTTTGTGAATTCGCTCATGGCGTTTTCGAGTTCTGGCTCCACCCGGCCCGGTACCGGACCCGGGCCTGCAATGCGGGCCGGTTTTGCCAACGGAAAGTTTGCTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCGGAGACCAAACTGAAGTTTAATTTCAATGCTTACCGGCCGCGTGCGGTGGTGGCCGCCGTTGAAGGTACTGTGGAGAGGGAGAACGACGGCGTTCTGGAAACTCCGGGGAGGGAGAATGGCGGCGGCCGGCGGGGAAATGAAGGGAGTTATGGATTGGAGCCGTCGGAGTTGGAGTTGCCGCATATTGAATGGATATCGGAATTGTTGCAGTAA

Protein sequence

MFQGFVFSLNDVYGHDISAVSLPEFTVSRLTEHVDDTAVFSSDEFRMYAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKFNFNAYRPRAVVAAVEGTVERENDGVLETPGRENGGGRRGNEGSYGLEPSELELPHIEWISELLQ

Homology

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BLAST of Lcy11g003120 vs. ExPASy Swiss-Prot
Match: O65036 (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN=TZF6 PE=1 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.0e-58
Identity = 117/202 (57.92%), Postives = 137/202 (67.82%), Query Frame = 0


Query: 36  DTAVFSSDEFRMYAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRT 95
           D A++ SDEFRMYAYKI+RCPRTRSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR 
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 96  GSCPKGDFCEFAHGVFEFWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR-PETKLKFN 155
           G+C +GD CEFAHGVFE+WLHPARYRTRACNAG  CQRKVCFFAH+PE+LR  E K +  
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKHRCR 163

Query: 156 FNAYRPRAVVAAVEG---TVERENDG--VLETPGRENGGGRRGNEGSYGL---------- 215
           + AYRP        G   T+  +++G     +P R        NE    L          
Sbjct: 164 Y-AYRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVLLKCWSRMSIVD 223

Query: 216 ---EPS--ELELPHIEWISELL 217
              EPS  +L+L H +WISEL+
Sbjct: 224 DHYEPSDLDLDLSHFDWISELV 244

[Close]

BLAST of Lcy11g003120 vs. ExPASy Swiss-Prot
Match: O82307 (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 9.2e-44
Identity = 74/110 (67.27%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 37  TAVFSSDEFRMYAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTG 96
           T  FSSDEFR+Y +KI+RC R RSHDWTECP+AH GEKA+RRDPR+F+Y+  ACP FR G
Sbjct: 83  TDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKG 142

Query: 97  SCPKGDFCEFAHGVFEFWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           SC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Sbjct: 143 SCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

[Close]

BLAST of Lcy11g003120 vs. ExPASy Swiss-Prot
Match: Q9M0G2 (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 9.2e-44
Identity = 74/107 (69.16%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 40  FSSDEFRMYAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCP 99
           +S D FRMY +K++RC R RSHDWTECPYAH GEKA+RRDPR+++Y+  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 100 KGDFCEFAHGVFEFWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           KGD CEFAHGVFE WLHPARYRT+ C  G  C RK+CFFAHSP++LR
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181

[Close]

BLAST of Lcy11g003120 vs. ExPASy Swiss-Prot
Match: P93755 (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=At2g41900 PE=1 SV=2)

HSP 1 Score: 176.4 bits (446), Expect = 3.5e-43
Identity = 70/110 (63.64%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 38  AVFSSDEFRMYAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGS 97
           +++++DEFRMY++K++ C R  SHDWTECP+ H GE A+RRDPR+F+Y+ V CP FR G+
Sbjct: 255 SIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGA 314

Query: 98  CPKGDFCEFAHGVFEFWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRP 148
           C +GD CE+AHGVFE WLHPA+YRTR C  G  C R+VCFFAH+PEELRP
Sbjct: 315 CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELRP 364

[Close]

BLAST of Lcy11g003120 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.5e-43
Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 40  FSSDEFRMYAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCP 99
           ++ DEFRMY +K++RC R RSHDWTECP+AH GEKA+RRDPRR+ Y+  ACP FR G C 
Sbjct: 73  YACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCK 132

Query: 100 KGDFCEFAHGVFEFWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           +GD CEFAHGVFE WLHPARYRT+ C  G  C+R+VCFFAH+P++LR
Sbjct: 133 RGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLR 179

[Close]

BLAST of Lcy11g003120 vs. ExPASy TrEMBL
Match: A0A5A7TRB5 (Zinc finger CCCH domain-containing protein 54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00410 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.3e-105
Identity = 182/217 (83.87%), Postives = 194/217 (89.40%), Query Frame = 0


Query: 1   MFQGFVFSLNDVYGHDISAVSLPEFTVSRLTEHVDDTAVFSSDEFRMYAYKIQRCPRTRS 60
           MFQGFVF +NDVYGH+ SAVSLPE TV  LTE VDDTAVFS+DEFRMY+YKIQRCPR RS
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPARY 120
           HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFR+GSCPKGDFCEFAHGVFE+WLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKLKFNFNAYRPRAVVAAVEGTVERENDGVLE 180
           RTRACNAGRFCQRKVCFFAHSPEELRPETK KFN NA R R  VAAVE   E +NDG+LE
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILE 180

Query: 181 TPGRENGGGRRGNEGSYGLEPSELELPHIEWISELLQ 218
            P RENGGGR+ NE S+G + SELELPHIEWISELL+
Sbjct: 181 IPARENGGGRK-NERSFGFDVSELELPHIEWISELLK 216

[Close]

BLAST of Lcy11g003120 vs. ExPASy TrEMBL
Match: A0A1S3BYP8 (zinc finger CCCH domain-containing protein 54 OS=Cucumis melo OX=3656 GN=LOC103494870 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.3e-105
Identity = 182/217 (83.87%), Postives = 194/217 (89.40%), Query Frame = 0


Query: 1   MFQGFVFSLNDVYGHDISAVSLPEFTVSRLTEHVDDTAVFSSDEFRMYAYKIQRCPRTRS 60
           MFQGFVF +NDVYGH+ SAVSLPE TV  LTE VDDTAVFS+DEFRMY+YKIQRCPR RS
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPARY 120
           HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFR+GSCPKGDFCEFAHGVFE+WLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKLKFNFNAYRPRAVVAAVEGTVERENDGVLE 180
           RTRACNAGRFCQRKVCFFAHSPEELRPETK KFN NA R R  VAAVE   E +NDG+LE
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILE 180

Query: 181 TPGRENGGGRRGNEGSYGLEPSELELPHIEWISELLQ 218
            P RENGGGR+ NE S+G + SELELPHIEWISELL+
Sbjct: 181 IPARENGGGRK-NERSFGFDVSELELPHIEWISELLK 216

[Close]

BLAST of Lcy11g003120 vs. ExPASy TrEMBL
Match: A0A6J1E9W0 (zinc finger CCCH domain-containing protein 54 OS=Cucurbita moschata OX=3662 GN=LOC111430684 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 5.3e-95
Identity = 171/219 (78.08%), Postives = 188/219 (85.84%), Query Frame = 0


Query: 1   MFQGFVFSLNDVYGHDISAVSLPEFTV--SRLTEHVDDTAVFSSDEFRMYAYKIQRCPRT 60
           M QGFVF +NDVYGH+ +AV+LPEF    +RLT   DDTA+F+SDEFRMYA+KIQRCP++
Sbjct: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPA 120
           RSHDWTECPYAHRGEKAQRRDPRRFNY+AVACPAFRTGSCPKGDFCEFAHGVFEFWLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKFNFNAYRPRAVVAAVEGTVERENDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLK +F+A   RA +AA+E  VER+NDGV
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGV 180

Query: 181 LETPGRENGGGRRGNEGSYGLEPSELELPHIEWISELLQ 218
            E P +E   G  GNE S  LE SE ELPHIEWISELLQ
Sbjct: 181 SEIPVKEISDG-LGNERSSELEASEFELPHIEWISELLQ 218

[Close]

BLAST of Lcy11g003120 vs. ExPASy TrEMBL
Match: A0A6J1JDT4 (zinc finger CCCH domain-containing protein 54 OS=Cucurbita maxima OX=3661 GN=LOC111483496 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.9e-93
Identity = 169/219 (77.17%), Postives = 187/219 (85.39%), Query Frame = 0


Query: 1   MFQGFVFSLNDVYGHDISAVSLPEFTV--SRLTEHVDDTAVFSSDEFRMYAYKIQRCPRT 60
           MFQGFVF +NDVYGH+ +AV+LPEF    +RLT   +DTA+F+SDEFRMYA+KIQRCP++
Sbjct: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPA 120
           RSHDWTECPYAHRGEKAQRRDPRRFNY+AVACPAFRTGSCPKGDFCEFAHGVFEFWLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKFNFNAYRPRAVVAAVEGTVERENDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK K +F A   RA +AA++  VER+NDGV
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180

Query: 181 LETPGRENGGGRRGNEGSYGLEPSELELPHIEWISELLQ 218
            E P +E   G  GNE S  LE SE ELPHIEWISELLQ
Sbjct: 181 SEIPVKEISDG-LGNERSSELEASESELPHIEWISELLQ 218

[Close]

BLAST of Lcy11g003120 vs. ExPASy TrEMBL
Match: A0A6J1CJI1 (zinc finger CCCH domain-containing protein 54 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011570 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 9.4e-76
Identity = 146/224 (65.18%), Postives = 168/224 (75.00%), Query Frame = 0


Query: 1   MFQGFVFSLND-VYGHDISAVSLPEFTVSRLTEHVDD-TAVFSSDEFRMYAYKIQRCPRT 60
           MFQGF   +N+ V+ HD S          +L E V+D  AVF SDEFRM+AYKIQRCPRT
Sbjct: 2   MFQGFFPGINNAVFDHDFSG-------CHQLMEQVEDAAAVFGSDEFRMFAYKIQRCPRT 61

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPA 120
           RSHDWTECPYAHRGEKAQRRD RRFNY+AVACPAFR G+CP+GDFCE+AHGVFE+WLHPA
Sbjct: 62  RSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPA 121

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKFNFNAYRPRAVVAAVEGTVERENDGV 180
           RYRTRACNAGRFCQRKVCFFAH+PE+LR ETK KF+FNA+R R  V AVE  +E +ND V
Sbjct: 122 RYRTRACNAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDV 181

Query: 181 LETPGRENG-----GGRRGNEGSYGLEPSELELPHIEWISELLQ 218
                   G        R N+ ++G E S+ +LPHI WI ELLQ
Sbjct: 182 SNIVNGLKGLTVREIRERKNDRNFGWEVSDSDLPHIGWIRELLQ 218

[Close]

BLAST of Lcy11g003120 vs. NCBI nr
Match: XP_008454474.1 (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo] >KAA0044676.1 zinc finger CCCH domain-containing protein 54 [Cucumis melo var. makuwa] >TYK16906.1 zinc finger CCCH domain-containing protein 54 [Cucumis melo var. makuwa])

HSP 1 Score: 390.6 bits (1002), Expect = 9.0e-105
Identity = 182/217 (83.87%), Postives = 194/217 (89.40%), Query Frame = 0


Query: 1   MFQGFVFSLNDVYGHDISAVSLPEFTVSRLTEHVDDTAVFSSDEFRMYAYKIQRCPRTRS 60
           MFQGFVF +NDVYGH+ SAVSLPE TV  LTE VDDTAVFS+DEFRMY+YKIQRCPR RS
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPARY 120
           HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFR+GSCPKGDFCEFAHGVFE+WLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKLKFNFNAYRPRAVVAAVEGTVERENDGVLE 180
           RTRACNAGRFCQRKVCFFAHSPEELRPETK KFN NA R R  VAAVE   E +NDG+LE
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILE 180

Query: 181 TPGRENGGGRRGNEGSYGLEPSELELPHIEWISELLQ 218
            P RENGGGR+ NE S+G + SELELPHIEWISELL+
Sbjct: 181 IPARENGGGRK-NERSFGFDVSELELPHIEWISELLK 216

[Close]

BLAST of Lcy11g003120 vs. NCBI nr
Match: KGN53171.2 (hypothetical protein Csa_015342 [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 8.1e-98
Identity = 169/214 (78.97%), Postives = 188/214 (87.85%), Query Frame = 0


Query: 4   GFVFSLNDVYGHDISAVSLPEFTVSRLTEHVDDTAVFSSDEFRMYAYKIQRCPRTRSHDW 63
           GFVF +NDVYGH+ S VSLPE TV  LTE  DDTAVFSSDEFRMY+YKIQRCPR RSHDW
Sbjct: 47  GFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRSHDW 106

Query: 64  TECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPARYRTR 123
           TECPYAHRGEKAQRRDPR+FNYTAVACPAFR+GSCPKGDFCEFAHGVFE+WLHPARYRTR
Sbjct: 107 TECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTR 166

Query: 124 ACNAGRFCQRKVCFFAHSPEELRPETKLKFNFNAYRPRAVVAAVEGTVERENDGVLETPG 183
           ACNAGRFCQRKVCFFAHSPEELRPETK K +F+A++ R  V A+E   E +NDG+LE P 
Sbjct: 167 ACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILEIPA 226

Query: 184 RENGGGRRGNEGSYGLEPSELELPHIEWISELLQ 218
           R +G GR+ NE S+GL+ +ELELPHIEWISELL+
Sbjct: 227 RVSGSGRK-NERSFGLDVTELELPHIEWISELLK 259

[Close]

BLAST of Lcy11g003120 vs. NCBI nr
Match: XP_038878131.1 (zinc finger CCCH domain-containing protein 54 [Benincasa hispida])

HSP 1 Score: 357.5 bits (916), Expect = 8.4e-95
Identity = 169/217 (77.88%), Postives = 183/217 (84.33%), Query Frame = 0


Query: 1   MFQGFVFSLNDVYGHDISAVSLPEFTVSRLTEHVDDTAVFSSDEFRMYAYKIQRCPRTRS 60
           MFQGFVF +NDVYGH+ SAVS+PE         +DDTA+FSSDEFRMYAYKIQRCPR RS
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSVPE---------IDDTAMFSSDEFRMYAYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPARY 120
           HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFR+GSCPKGDFCEFAHGVFE+WLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKLKFNFNAYRPRAVVAAVEGTVERENDGVLE 180
           RTRACNAGRFCQRKVCFFAHSP+ELRPETK KFNFNA+R R  VA VE   E + DG  E
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPKELRPETKQKFNFNAHRQRVAVADVESPSEEKFDGASE 180

Query: 181 TPGRENGGGRRGNEGSYGLEPSELELPHIEWISELLQ 218
            P R   GGR   + S+GLE SEL+LPH+EWISELLQ
Sbjct: 181 IPVRGTSGGRE-KQRSFGLEVSELDLPHVEWISELLQ 207

[Close]

BLAST of Lcy11g003120 vs. NCBI nr
Match: XP_022922815.1 (zinc finger CCCH domain-containing protein 54 [Cucurbita moschata])

HSP 1 Score: 357.1 bits (915), Expect = 1.1e-94
Identity = 171/219 (78.08%), Postives = 188/219 (85.84%), Query Frame = 0


Query: 1   MFQGFVFSLNDVYGHDISAVSLPEFTV--SRLTEHVDDTAVFSSDEFRMYAYKIQRCPRT 60
           M QGFVF +NDVYGH+ +AV+LPEF    +RLT   DDTA+F+SDEFRMYA+KIQRCP++
Sbjct: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPA 120
           RSHDWTECPYAHRGEKAQRRDPRRFNY+AVACPAFRTGSCPKGDFCEFAHGVFEFWLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKFNFNAYRPRAVVAAVEGTVERENDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLK +F+A   RA +AA+E  VER+NDGV
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGV 180

Query: 181 LETPGRENGGGRRGNEGSYGLEPSELELPHIEWISELLQ 218
            E P +E   G  GNE S  LE SE ELPHIEWISELLQ
Sbjct: 181 SEIPVKEISDG-LGNERSSELEASEFELPHIEWISELLQ 218

[Close]

BLAST of Lcy11g003120 vs. NCBI nr
Match: XP_023553083.1 (zinc finger CCCH domain-containing protein 54 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355.5 bits (911), Expect = 3.2e-94
Identity = 170/219 (77.63%), Postives = 187/219 (85.39%), Query Frame = 0


Query: 1   MFQGFVFSLNDVYGHDISAVSLPEFTV--SRLTEHVDDTAVFSSDEFRMYAYKIQRCPRT 60
           M QGFVF +NDVYGH+ +AV+LPEF    +RLT   DDTA+F+SDEFRMYA+KIQRCP++
Sbjct: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPA 120
           RSHDWTECPYAHRGEKAQRRDPRRFNY+AVACPAFRTGSCPKGDFCEFAHGVFEFWLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKFNFNAYRPRAVVAAVEGTVERENDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLK +F+A   R  +AA+E  VER+NDGV
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARVALAALEYPVERKNDGV 180

Query: 181 LETPGRENGGGRRGNEGSYGLEPSELELPHIEWISELLQ 218
            E P +E   G  GNE S  LE SE ELPHIEWISELLQ
Sbjct: 181 SEIPVKEISDG-LGNERSSELEASEFELPHIEWISELLQ 218

[Close]

BLAST of Lcy11g003120 vs. TAIR 10
Match: AT5G07500.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 225.7 bits (574), Expect = 3.6e-59
Identity = 117/202 (57.92%), Postives = 137/202 (67.82%), Query Frame = 0


Query: 36  DTAVFSSDEFRMYAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRT 95
           D A++ SDEFRMYAYKI+RCPRTRSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR 
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 96  GSCPKGDFCEFAHGVFEFWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR-PETKLKFN 155
           G+C +GD CEFAHGVFE+WLHPARYRTRACNAG  CQRKVCFFAH+PE+LR  E K +  
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKHRCR 163

Query: 156 FNAYRPRAVVAAVEG---TVERENDG--VLETPGRENGGGRRGNEGSYGL---------- 215
           + AYRP        G   T+  +++G     +P R        NE    L          
Sbjct: 164 Y-AYRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVLLKCWSRMSIVD 223

Query: 216 ---EPS--ELELPHIEWISELL 217
              EPS  +L+L H +WISEL+
Sbjct: 224 DHYEPSDLDLDLSHFDWISELV 244

[Close]

BLAST of Lcy11g003120 vs. TAIR 10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 178.3 bits (451), Expect = 6.5e-45
Identity = 74/110 (67.27%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 37  TAVFSSDEFRMYAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTG 96
           T  FSSDEFR+Y +KI+RC R RSHDWTECP+AH GEKA+RRDPR+F+Y+  ACP FR G
Sbjct: 83  TDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKG 142

Query: 97  SCPKGDFCEFAHGVFEFWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           SC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Sbjct: 143 SCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

[Close]

BLAST of Lcy11g003120 vs. TAIR 10
Match: AT2G25900.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 178.3 bits (451), Expect = 6.5e-45
Identity = 74/110 (67.27%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 37  TAVFSSDEFRMYAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTG 96
           T  FSSDEFR+Y +KI+RC R RSHDWTECP+AH GEKA+RRDPR+F+Y+  ACP FR G
Sbjct: 83  TDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKG 142

Query: 97  SCPKGDFCEFAHGVFEFWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           SC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Sbjct: 143 SCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

[Close]

BLAST of Lcy11g003120 vs. TAIR 10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 178.3 bits (451), Expect = 6.5e-45
Identity = 74/107 (69.16%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 40  FSSDEFRMYAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCP 99
           +S D FRMY +K++RC R RSHDWTECPYAH GEKA+RRDPR+++Y+  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 100 KGDFCEFAHGVFEFWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           KGD CEFAHGVFE WLHPARYRT+ C  G  C RK+CFFAHSP++LR
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181

[Close]

BLAST of Lcy11g003120 vs. TAIR 10
Match: AT2G41900.1 (CCCH-type zinc finger protein with ARM repeat domain )

HSP 1 Score: 176.4 bits (446), Expect = 2.5e-44
Identity = 70/110 (63.64%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 38  AVFSSDEFRMYAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGS 97
           +++++DEFRMY++K++ C R  SHDWTECP+ H GE A+RRDPR+F+Y+ V CP FR G+
Sbjct: 255 SIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGA 314

Query: 98  CPKGDFCEFAHGVFEFWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRP 148
           C +GD CE+AHGVFE WLHPA+YRTR C  G  C R+VCFFAH+PEELRP
Sbjct: 315 CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELRP 364

The following BLAST results are available for this feature:

BLAST of Lcy11g003120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65036	5.0e-58	57.92	Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O82307	9.2e-44	67.27	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M0G2	9.2e-44	69.16	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
P93755	3.5e-43	63.64	Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6L4N4	3.5e-43	67.29	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Lcy11g003120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRB5	4.3e-105	83.87	Zinc finger CCCH domain-containing protein 54 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3BYP8	4.3e-105	83.87	zinc finger CCCH domain-containing protein 54 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1E9W0	5.3e-95	78.08	zinc finger CCCH domain-containing protein 54 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JDT4	2.9e-93	77.17	zinc finger CCCH domain-containing protein 54 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1CJI1	9.4e-76	65.18	zinc finger CCCH domain-containing protein 54 isoform X1 OS=Momordica charantia ...	[more]

BLAST of Lcy11g003120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454474.1	9.0e-105	83.87	PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo] >KAA0044...	[more]
KGN53171.2	8.1e-98	78.97	hypothetical protein Csa_015342 [Cucumis sativus]	[more]
XP_038878131.1	8.4e-95	77.88	zinc finger CCCH domain-containing protein 54 [Benincasa hispida]	[more]
XP_022922815.1	1.1e-94	78.08	zinc finger CCCH domain-containing protein 54 [Cucurbita moschata]	[more]
XP_023553083.1	3.2e-94	77.63	zinc finger CCCH domain-containing protein 54 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy11g003120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07500.1	3.6e-59	57.92	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.1	6.5e-45	67.27	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.2	6.5e-45	67.27	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT4G29190.1	6.5e-45	69.16	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G41900.1	2.5e-44	63.64	CCCH-type zinc finger protein with ARM repeat domain	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 119..142 e-value: 13.0 score: 7.5 coord: 84..110 e-value: 4.2E-6 score: 36.3
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 89..109 e-value: 4.7E-6 score: 26.4
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 84..111 score: 13.35656
None	No IPR available	GENE3D	4.10.1000.10		coord: 81..153 e-value: 2.9E-8 score: 35.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..200
None	No IPR available	PANTHER	PTHR14493:SF109	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54	coord: 34..162
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 34..162
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 84..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g003120.1	Lcy11g003120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009910	negative regulation of flower development
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0006349	regulation of gene expression by genetic imprinting
cellular_component	GO:0005634	nucleus
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000976	transcription cis-regulatory region binding