Lcy10g004760 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g004760
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRibonuclease H-like superfamily protein
LocationChr10: 12468942 .. 12469824 (+)
RNA-Seq ExpressionLcy10g004760
SyntenyLcy10g004760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTGTAAGTTCTCTAAGAAAATCTGGTTGAAGTTTCTCCCTAATGTTGGTTCCCTTTTTTACATATGCAGGCCTGCGTGGGATGCTCTATTGATTTGGGAAGGTCTAGTGGAAAGACTCGAGGAGGAAGAGATAAGCATCACCATCCTAATTCTATGGAATATTTGGACAACTCGGAACAAGGTGATCAACAATGGCTACAAAGCAGATCAAAATCAAATCAGTAAAATTATTGAAGCCAACATATCCGAGCATTTCAAGGTTAGAGATACTAACCTGAGTGCTTCTAGATCGGAGAGTGATCGGAGTCAATATTTGTGGTCTCCTCCTCCCCCACCTTTTCTGAAGCTGAATTCCGATGCCTCTTGGAGCAGTTCAGAAGAAATTGGGGGCTTAGGTTGGACGGTTCGTGACTCCTCAGGGTCTCTGGTATTCGCCGGCAACATGAAGACAAAGAAGAATTGGGAAACGTTGGAGTTGGAAGCTCTAGCTATGAAGGAAGGGTTGTCTTCTTTCTTGCAAAATAGCGCATGCAAGGGTCGCCCTCTTGTGGTTGAATCGGACTCGAGCACTCTGATTAAGTTGATCCAAAATCAAGAGTCTGATCTCTCTGAGGTAAGAAGCATTGTGGAAGAGATTGAGCTTCTGGCAAGGAGCGCAATAGGAATCTCCTTCGTTTGGTGTTCGAGAAGCTGCAATCGAGCAACCCACACCCTTGCTAAGGATGCGAGATTGGCAGGAACTATAGAGTTTCCTTTGATTTTTGTTGATGGTACCTTTGTATTCCCTGTTGGGAGGAGGTGGTTTTGTTGGGCAATCTGTTTTGCCAAAGCTAGCTCTATTATTAATGAGGAAAAAAAGTTTATTGCTGGTTGTTAG

mRNA sequence

ATGGGAGTGCCTGCGTGGGATGCTCTATTGATTTGGGAAGGTCTAGTGGAAAGACTCGAGGAGGAAGAGATAAGCATCACCATCCTAATTCTATGGAATATTTGGACAACTCGGAACAAGGTGATCAACAATGGCTACAAAGCAGATCAAAATCAAATCAGTAAAATTATTGAAGCCAACATATCCGAGCATTTCAAGGTTAGAGATACTAACCTGAGTGCTTCTAGATCGGAGAGTGATCGGAGTCAATATTTGTGGTCTCCTCCTCCCCCACCTTTTCTGAAGCTGAATTCCGATGCCTCTTGGAGCAGTTCAGAAGAAATTGGGGGCTTAGGTTGGACGGTTCGTGACTCCTCAGGGTCTCTGGTATTCGCCGGCAACATGAAGACAAAGAAGAATTGGGAAACGTTGGAGTTGGAAGCTCTAGCTATGAAGGAAGGGTTGTCTTCTTTCTTGCAAAATAGCGCATGCAAGGGTCGCCCTCTTGTGGTTGAATCGGACTCGAGCACTCTGATTAAGTTGATCCAAAATCAAGAGTCTGATCTCTCTGAGGTAAGAAGCATTGTGGAAGAGATTGAGCTTCTGGCAAGGAGCGCAATAGGAATCTCCTTCGTTTGGTGTTCGAGAAGCTGCAATCGAGCAACCCACACCCTTGCTAAGGATGCGAGATTGGCAGGAACTATAGAGTTTCCTTTGATTTTTGTTGATGGTACCTTTGTATTCCCTGTTGGGAGGAGGTGGTTTTGTTGGGCAATCTGTTTTGCCAAAGCTAGCTCTATTATTAATGAGGAAAAAAAGTTTATTGCTGGTTGTTAG

Coding sequence (CDS)

ATGGGAGTGCCTGCGTGGGATGCTCTATTGATTTGGGAAGGTCTAGTGGAAAGACTCGAGGAGGAAGAGATAAGCATCACCATCCTAATTCTATGGAATATTTGGACAACTCGGAACAAGGTGATCAACAATGGCTACAAAGCAGATCAAAATCAAATCAGTAAAATTATTGAAGCCAACATATCCGAGCATTTCAAGGTTAGAGATACTAACCTGAGTGCTTCTAGATCGGAGAGTGATCGGAGTCAATATTTGTGGTCTCCTCCTCCCCCACCTTTTCTGAAGCTGAATTCCGATGCCTCTTGGAGCAGTTCAGAAGAAATTGGGGGCTTAGGTTGGACGGTTCGTGACTCCTCAGGGTCTCTGGTATTCGCCGGCAACATGAAGACAAAGAAGAATTGGGAAACGTTGGAGTTGGAAGCTCTAGCTATGAAGGAAGGGTTGTCTTCTTTCTTGCAAAATAGCGCATGCAAGGGTCGCCCTCTTGTGGTTGAATCGGACTCGAGCACTCTGATTAAGTTGATCCAAAATCAAGAGTCTGATCTCTCTGAGGTAAGAAGCATTGTGGAAGAGATTGAGCTTCTGGCAAGGAGCGCAATAGGAATCTCCTTCGTTTGGTGTTCGAGAAGCTGCAATCGAGCAACCCACACCCTTGCTAAGGATGCGAGATTGGCAGGAACTATAGAGTTTCCTTTGATTTTTGTTGATGGTACCTTTGTATTCCCTGTTGGGAGGAGGTGGTTTTGTTGGGCAATCTGTTTTGCCAAAGCTAGCTCTATTATTAATGAGGAAAAAAAGTTTATTGCTGGTTGTTAG

Protein sequence

MGVPAWDALLIWEGLVERLEEEEISITILILWNIWTTRNKVINNGYKADQNQISKIIEANISEHFKVRDTNLSASRSESDRSQYLWSPPPPPFLKLNSDASWSSSEEIGGLGWTVRDSSGSLVFAGNMKTKKNWETLELEALAMKEGLSSFLQNSACKGRPLVVESDSSTLIKLIQNQESDLSEVRSIVEEIELLARSAIGISFVWCSRSCNRATHTLAKDARLAGTIEFPLIFVDGTFVFPVGRRWFCWAICFAKASSIINEEKKFIAGC
Homology
BLAST of Lcy10g004760 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.5e-19
Identity = 62/185 (33.51%), Postives = 96/185 (51.89%), Query Frame = 0

Query: 12  WEGLVERLEEEEISITILILWNIWTTRNKVINNGYKADQNQISKIIEANISEHFKVRDTN 71
           W  LV  L +EE++ +++I W IW +RN+ I  G   D+ Q+ + I   I+ +   + T 
Sbjct: 19  WNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNID-KGTC 78

Query: 72  LSASRSESDRSQYL-------------WSPPPPPFLKLNSDASWSSSEEIGGLGWTVRDS 131
           +S +R       YL             WS PP    KLN+DASWS   E+GG+GW + D 
Sbjct: 79  ISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDC 138

Query: 132 SGSLVFAGNMKTKKNWETLELEALAMKEGLSSFLQNSACKGRPLVVESDSSTLIKLIQNQ 184
            G +V AGN K ++  E   LE + +  GL      S     P+ +ESDS  +I+L++ +
Sbjct: 139 RGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSR---SPIYLESDSVEVIRLMKKE 198

BLAST of Lcy10g004760 vs. ExPASy TrEMBL
Match: A0A6J5VSP2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51717 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.9e-19
Identity = 69/219 (31.51%), Postives = 107/219 (48.86%), Query Frame = 0

Query: 7   DALLIWEGLVERLEEEE-----ISITILILWNIWTTRNKVINNGYKADQNQISKIIEANI 66
           D +  W+ ++  L   E     I   +  LW IW  RN  + +G +AD  +   ++   +
Sbjct: 204 DFISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLLLKQV 263

Query: 67  SEHFKVR-DTNLSASRSESDRSQYLWSPPPPPFLKLNSDASWSSSEEIGGLGWTVRDSSG 126
           SE    + D      +  S  +   W  PPP  LK+NSDA+WS+    GG+GW +RDS G
Sbjct: 264 SEFRTAKQDLQPQPLQPVSSPAPLSWCKPPPGLLKVNSDAAWSAQRMGGGVGWVIRDSFG 323

Query: 127 SLVFAGNMKTKKNWETLELEALAMKEGLSSFLQNSACKGRPLVVESDSSTLIKLIQNQES 186
            L+ AG          L +E LA++  LS            ++VESDS   I ++  + +
Sbjct: 324 LLLCAGGQGDLHGSSALMMELLAIRHALSECANFHL---TDIIVESDSQKGILMLNGRAT 383

Query: 187 DLSEVRSIVEEIELLARSAIGISFVWCSRSCNRATHTLA 220
             S++  IV +I  L  S   +SFV+   SCN+ATH++A
Sbjct: 384 VDSDLEGIVFDIRQLVASLSRVSFVFAPSSCNQATHSVA 419

BLAST of Lcy10g004760 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-18
Identity = 73/254 (28.74%), Postives = 119/254 (46.85%), Query Frame = 0

Query: 15  LVERLEEEEISITILILWNIWTTRNKVINNGYKADQNQISKIIEANISEHFKVRDTNLSA 74
           ++++  +E++ + ++  W IW  RN VI  G  +  + + + +   ++E     +T+LS 
Sbjct: 1   MLDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSM 60

Query: 75  SRSESDRSQYLWSPPPPPFLKLNSDASWSSSEEIGGLGWTVRDSSGSLVFAGNMKTKKNW 134
              ++  ++  W PPP     LN+DASWS S   GG+GW +R   G +V AGN   +   
Sbjct: 61  LH-KTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACN 120

Query: 135 ETLELEALAMKEGLSSFLQNSACKGRPLVVESDSSTLIKLIQNQESDLSEVRSIVEEIEL 194
               LEA A+ EGL +         RPL +E+DS+ +  L+  +  DL++   +VEEI  
Sbjct: 121 NVKLLEASAILEGLRNLTNLGVL--RPLHIETDSAEVESLLNRKREDLTKTGWVVEEILN 180

Query: 195 LARSAIGISFVWCSRSCNRATHTLAKDARLAGTIEFPLIFVDGTFVFPVGRRWFCWAICF 254
           L  S   ++F    R  N   H+LA+ A                    V R    W  CF
Sbjct: 181 LRDSCEILAFAKVGRETNGCAHSLAQRA-------------------SVLRESMIWVDCF 232

Query: 255 AKASSIINEEKKFI 269
               SI+ + + FI
Sbjct: 241 PNWLSILAKSRPFI 232

BLAST of Lcy10g004760 vs. ExPASy TrEMBL
Match: A0A6J5WPU6 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS20372 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-18
Identity = 67/219 (30.59%), Postives = 106/219 (48.40%), Query Frame = 0

Query: 7   DALLIWEGLVERLEEEE-----ISITILILWNIWTTRNKVINNGYKADQNQISKIIEANI 66
           D +  W+ ++  L   E     I   +  LW IW  RN  + +G +AD  +   ++   +
Sbjct: 711 DFISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLLLKQV 770

Query: 67  SEHFKVR-DTNLSASRSESDRSQYLWSPPPPPFLKLNSDASWSSSEEIGGLGWTVRDSSG 126
           SE    + D      +  S  +   W  PPP  LK+N DA+WS+    GG+GW +RDS G
Sbjct: 771 SEFRTAKQDLQPQPLQPVSSPAPLSWCKPPPGLLKVNCDAAWSAQRMGGGVGWVIRDSFG 830

Query: 127 SLVFAGNMKTKKNWETLELEALAMKEGLSSFLQNSACKGRPLVVESDSSTLIKLIQNQES 186
            L+ AG          + +E LA++  LS            ++VESDS   I ++  + +
Sbjct: 831 LLLCAGGQGDLHGSSAIMMELLAIRHALSECANFHL---TDIIVESDSQKGILMLNGRAT 890

Query: 187 DLSEVRSIVEEIELLARSAIGISFVWCSRSCNRATHTLA 220
             S++  IV +I  L  S   +SFV+  RSCN+A H++A
Sbjct: 891 VDSDLEGIVFDIRQLVASLSRVSFVFAPRSCNQAAHSVA 926

BLAST of Lcy10g004760 vs. ExPASy TrEMBL
Match: A0A6J5XPQ2 (RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS35944 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.8e-18
Identity = 66/193 (34.20%), Postives = 100/193 (51.81%), Query Frame = 0

Query: 22  EEISITILILWNIWTTRNKVINNGYKADQNQISKIIEANISEHFKVRDTNLSAS--RSES 81
           E I   +  LW IW  RN V+ +G +AD  +   ++   +SE +++   NL     +  S
Sbjct: 156 EAIQWFVFGLWRIWKARNSVVFDGVQADPAEAVHLLLQQVSE-YRIAKQNLQPQPLQPAS 215

Query: 82  DRSQYLWSPPPPPFLKLNSDASWSSSEEIGGLGWTVRDSSGSLVFAGNMKTKKNWETLEL 141
                 W  PPP FLK+N DA+WS+    GG+GW +RDS G L+ AG          L +
Sbjct: 216 SPVPQSWCKPPPGFLKVNCDAAWSAQRLCGGVGWVIRDSFGLLLCAGGQGDLHGSSALMM 275

Query: 142 EALAMKEGLSSFLQNSACKGRPLVVESDSSTLIKLIQNQESDLSEVRSIVEEIELLARSA 201
           E LA++  LS   + S      ++VESDS   I ++  + +  S++  IV +I+ L  S 
Sbjct: 276 ELLAIRHALS---ECSHFHLTNVIVESDSQMGISMLNGRVTVDSDLEGIVFDIQQLVASL 335

Query: 202 IGISFVWCSRSCN 213
             +SFV+  RSCN
Sbjct: 336 SRVSFVFAPRSCN 344

BLAST of Lcy10g004760 vs. NCBI nr
Match: XP_015382610.1 (uncharacterized protein LOC107175578 [Citrus sinensis])

HSP 1 Score: 106.7 bits (265), Expect = 3.2e-19
Identity = 63/206 (30.58%), Postives = 115/206 (55.83%), Query Frame = 0

Query: 15  LVERLEEEEISITILILWNIWTTRNKVINNGYKADQNQISKIIEANISEHFKVRDTNLSA 74
           L  R  + ++ + I+I W +W  RN+++  G + +   +    EA +  + +V+      
Sbjct: 15  LYSRRNKADLELMIMICWMVWNARNEMLFKGKRENPQALVAKAEAVLEAYKRVQKPEQVR 74

Query: 75  SRSESDRSQYLWSPPPPPFLKLNSDASWSSSEEIGGLGWTVRDSSGSLVFAGNMKTKKNW 134
             S+  ++Q +W+PP   F+K+N DA+ SS + + GLG  +RD  G+++ A    +K N 
Sbjct: 75  KESQQVQTQQVWNPPQNGFVKVNVDAATSSEKHLAGLGAIIRDDQGTVIAAAIKISKFNG 134

Query: 135 ETLELEALAMKEGLSSFLQNSACKGRPLVVESDSSTLIKLIQNQESDLSEVRSIVEEIEL 194
           +    EA  ++ GL    +N++ K   L+VESD+ +++KL+ N++   SE+  I+ EI+ 
Sbjct: 135 DVSFAEAETLEWGL-QIARNASAKA--LIVESDAQSVVKLVNNKQGGKSEIFWIISEIQN 194

Query: 195 LARSAIGISFVWCSRSCNRATHTLAK 221
           L R+   +S  +  RS N  TH+LAK
Sbjct: 195 LIRNFELVSINYTHRSRNAITHSLAK 217

BLAST of Lcy10g004760 vs. NCBI nr
Match: XP_015385738.1 (uncharacterized protein LOC107177034 [Citrus sinensis])

HSP 1 Score: 105.1 bits (261), Expect = 9.4e-19
Identity = 66/214 (30.84%), Postives = 107/214 (50.00%), Query Frame = 0

Query: 7   DALLIWEGLVERLEEEEISITILILWNIWTTRNKVINNGYKADQNQISKIIEANISEHFK 66
           D L I   + ++L + +I + + I W IW  RNK +  G K +        EA +  + +
Sbjct: 66  DMLEIMVEMAKKLTKSDIEVMVAICWTIWYGRNKFLFEGKKMEPLLTISRAEAVVEAYRR 125

Query: 67  VRDTNLSASRSESDRSQYLWSPPPPPFLKLNSDASWSSSEEIGGLGWTVRDSSGSLVFAG 126
           V+   L      S ++Q +WSPPP    K+N DA+ +   +  GLG  +RDSS  +  A 
Sbjct: 126 VKQPTLDPEAKYSSKNQQVWSPPPDNTFKVNVDAAVNFDRQKAGLGVVIRDSSNKVKVAA 185

Query: 127 NMKTKKNWETLELEALAMKEGLSSFLQNSACKGRPLVVESDSSTLIKLIQNQESDLSEVR 186
              T    +    EA A++ GL   +   +   + ++VESD   ++KLI N E   +E+ 
Sbjct: 186 VKSTLFTGDVQTAEAEAVEWGL---VVAKSAAFQCIMVESDCQEVVKLINNNEGSRTEIM 245

Query: 187 SIVEEIELLARSAIGISFVWCSRSCNRATHTLAK 221
            ++ EI+ L++    IS+    RSCN   H+LAK
Sbjct: 246 WVISEIQSLSKDFQNISYYHTPRSCNTHAHSLAK 276

BLAST of Lcy10g004760 vs. NCBI nr
Match: XP_015385737.1 (uncharacterized protein LOC107177033 [Citrus sinensis])

HSP 1 Score: 105.1 bits (261), Expect = 9.4e-19
Identity = 62/206 (30.10%), Postives = 106/206 (51.46%), Query Frame = 0

Query: 15  LVERLEEEEISITILILWNIWTTRNKVINNGYKADQNQISKIIEANISEHFKVRDTNLSA 74
           + ++L + +I + + I W IW  +NK +  G K +       +EA +  + +V+   L  
Sbjct: 1   MAKKLTKSDIEVMVAICWTIWYGKNKFLFEGKKMEPLLTISRVEAVVEAYRRVKQLKLEL 60

Query: 75  SRSESDRSQYLWSPPPPPFLKLNSDASWSSSEEIGGLGWTVRDSSGSLVFAGNMKTKKNW 134
             + S ++Q +WSPPP    K+N DA+ +   +  GLG  +RDSS  +  A    T    
Sbjct: 61  KATSSSKNQQVWSPPPDNTFKVNVDAAVNFDRQKAGLGVVIRDSSNKVKVAAVKSTLFTG 120

Query: 135 ETLELEALAMKEGLSSFLQNSACKGRPLVVESDSSTLIKLIQNQESDLSEVRSIVEEIEL 194
           +    EA A++ GL   +   +   + ++VESD   ++KLI N E   +E+  ++ EI+ 
Sbjct: 121 DVQTAEAEAVEWGL---VVAKSAAFQCIMVESDCQEVVKLINNNEGSRTEIMWVISEIQS 180

Query: 195 LARSAIGISFVWCSRSCNRATHTLAK 221
           L++    IS+    RSCN   H+LAK
Sbjct: 181 LSKDFQNISYYHTPRSCNTHAHSLAK 203

BLAST of Lcy10g004760 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 9.4e-19
Identity = 62/185 (33.51%), Postives = 96/185 (51.89%), Query Frame = 0

Query: 12  WEGLVERLEEEEISITILILWNIWTTRNKVINNGYKADQNQISKIIEANISEHFKVRDTN 71
           W  LV  L +EE++ +++I W IW +RN+ I  G   D+ Q+ + I   I+ +   + T 
Sbjct: 19  WNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNID-KGTC 78

Query: 72  LSASRSESDRSQYL-------------WSPPPPPFLKLNSDASWSSSEEIGGLGWTVRDS 131
           +S +R       YL             WS PP    KLN+DASWS   E+GG+GW + D 
Sbjct: 79  ISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDC 138

Query: 132 SGSLVFAGNMKTKKNWETLELEALAMKEGLSSFLQNSACKGRPLVVESDSSTLIKLIQNQ 184
            G +V AGN K ++  E   LE + +  GL      S     P+ +ESDS  +I+L++ +
Sbjct: 139 RGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSR---SPIYLESDSVEVIRLMKKE 198

BLAST of Lcy10g004760 vs. NCBI nr
Match: CAB4291403.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-18
Identity = 69/219 (31.51%), Postives = 107/219 (48.86%), Query Frame = 0

Query: 7   DALLIWEGLVERLEEEE-----ISITILILWNIWTTRNKVINNGYKADQNQISKIIEANI 66
           D +  W+ ++  L   E     I   +  LW IW  RN  + +G +AD  +   ++   +
Sbjct: 204 DFISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLLLKQV 263

Query: 67  SEHFKVR-DTNLSASRSESDRSQYLWSPPPPPFLKLNSDASWSSSEEIGGLGWTVRDSSG 126
           SE    + D      +  S  +   W  PPP  LK+NSDA+WS+    GG+GW +RDS G
Sbjct: 264 SEFRTAKQDLQPQPLQPVSSPAPLSWCKPPPGLLKVNSDAAWSAQRMGGGVGWVIRDSFG 323

Query: 127 SLVFAGNMKTKKNWETLELEALAMKEGLSSFLQNSACKGRPLVVESDSSTLIKLIQNQES 186
            L+ AG          L +E LA++  LS            ++VESDS   I ++  + +
Sbjct: 324 LLLCAGGQGDLHGSSALMMELLAIRHALSECANFHL---TDIIVESDSQKGILMLNGRAT 383

Query: 187 DLSEVRSIVEEIELLARSAIGISFVWCSRSCNRATHTLA 220
             S++  IV +I  L  S   +SFV+   SCN+ATH++A
Sbjct: 384 VDSDLEGIVFDIRQLVASLSRVSFVFAPSSCNQATHSVA 419

BLAST of Lcy10g004760 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-14
Identity = 48/194 (24.74%), Postives = 96/194 (49.48%), Query Frame = 0

Query: 30  ILWNIWTTRNKVINNGYKADQNQISKIIEANISEHFKVRDTNLSASRSESDRSQY-LWSP 89
           +LW +W  RN+++  G + +  ++ +  E ++ E     +     ++ + +RS    W P
Sbjct: 363 LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRP 422

Query: 90  PPPPFLKLNSDASWSSSEEIGGLGWTVRDSSGSLVFAGNMKTKKNWETLELEALAMKEGL 149
           PP  ++K N+DA+W+   E  G+GW +R+  G + + G     K    LE E  AM+  +
Sbjct: 423 PPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAV 482

Query: 150 SSFLQNSACKGRPLVVESDSSTLIKLIQNQESDLSEVRSIVEEIELLARSAIGISFVWCS 209
            S    S  +   ++ ESDS  LI+++ N E     ++  +++++ L      + FV+  
Sbjct: 483 LSL---SRFQYNYVIFESDSQVLIEILNNDEI-WPSLKPTIQDLQRLLSQFTEVKFVFIP 542

Query: 210 RSCNRATHTLAKDA 223
           R  N     +A+++
Sbjct: 543 REGNTLAERVARES 552

BLAST of Lcy10g004760 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-12
Identity = 46/194 (23.71%), Postives = 94/194 (48.45%), Query Frame = 0

Query: 30  ILWNIWTTRNKVINNGYKADQNQISKIIEANISEHFKVRDTNLSASRSESDRS-QYLWSP 89
           +LW +W +RN+++  G + D  ++ +    +  E    R+    AS  + +R+    W  
Sbjct: 80  LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKA 139

Query: 90  PPPPFLKLNSDASWSSSEEIGGLGWTVRDSSGSLVFAGNMKTKKNWETLELEALAMKEGL 149
           PP  ++K N+DA+W       G+GW +R+ SG +++ G     +    LE E  A++  +
Sbjct: 140 PPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWAV 199

Query: 150 SSFLQNSACKGRPLVVESDSSTLIKLIQNQESDLSEVRSIVEEIELLARSAIGISFVWCS 209
              L  S    + ++ ESD+  L+ L+ N +     ++  +E+I+ L      + F +  
Sbjct: 200 ---LTMSRFNYKRIIFESDAQALVNLL-NSDDFWPTLQPALEDIQQLLHHFEEVKFEFTP 259

Query: 210 RSCNRATHTLAKDA 223
           R  N+    +A+++
Sbjct: 260 RGGNKVADRIARES 269

BLAST of Lcy10g004760 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-10
Identity = 62/230 (26.96%), Postives = 98/230 (42.61%), Query Frame = 0

Query: 26  ITILILWNIWTTRNKVINNGYKADQNQISKIIEANISEHFKVRDTNLSASRSESDR---- 85
           + + ++W IW  RN V+ N ++  ++    ++ A    H  +  T          R    
Sbjct: 264 LPVWLIWRIWKARNNVVFNKFR--ESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAE 323

Query: 86  SQYLWSPPPPPFLKLNSDASWSSSEEIGGLGWTVRDSSGSLVFAGNMKTKKNWETLELEA 145
           ++  W  PP  ++K N DA +   +     GW +R+  G+ +  G+MK       LE E 
Sbjct: 324 NKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAET 383

Query: 146 LAMKEGLSSFLQNSACKGRPLV-VESDSSTLIKLIQNQESDLSEVRSIVEEIELLARSAI 205
            A    L + LQ +  +G   V +E D  TLI LI N  S  S + + +E+I   A    
Sbjct: 384 KA----LLAALQQTWIRGYTQVFMEGDCQTLINLI-NGISFHSSLANHLEDISFWANKFA 443

Query: 206 GISFVWCSRSCNRATHTLAKDARLAGTIEFPLIFVDGTFVFPVG-RRWFC 250
            I F +  R  N+  H LAK      T      F  G+   P+   R+FC
Sbjct: 444 SIQFGFIRRKGNKLAHVLAKYGCTYST------FYSGSGSLPIWLDRYFC 480

BLAST of Lcy10g004760 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-08
Identity = 45/198 (22.73%), Postives = 88/198 (44.44%), Query Frame = 0

Query: 30  ILWNIWTTRNKVINNGYKADQNQISKIIEANISEHFKVRDTNLSASRSESDRS-----QY 89
           ++W IW + N ++   +   + +    +E  +++  +  D  ++  +   +R+       
Sbjct: 47  LMWRIWKSGNDLV---FNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPSRNT 106

Query: 90  LWSPPPPPFLKLNSDASWSSSEEIGGLGWTVRDSSGSLVFAGNMKTKKNWETLELEALAM 149
            WSPP    LK N DAS      + GLGW +R+S G+++  G  K +    T E E   +
Sbjct: 107 KWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTL 166

Query: 150 KEGLSSFLQNSACKGRPLVVESDSSTLIKLIQNQESDLSEVRSIVEEIELLARSAIGISF 209
              + +   +     + ++ E D+ T+ ++I N +S    ++  ++ I+    S   I F
Sbjct: 167 ---IWAIQASYGFGHKKVIFEGDNQTITRMI-NTKSSNPRLQHFLDTIQSWIPSFESIEF 226

Query: 210 VWCSRSCNRATHTLAKDA 223
            +  R  N     LAK A
Sbjct: 227 SFKHREQNGCADFLAKQA 237

BLAST of Lcy10g004760 vs. TAIR 10
Match: AT4G09775.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-07
Identity = 32/130 (24.62%), Postives = 56/130 (43.08%), Query Frame = 0

Query: 31  LWNIWTTRN------------KVINNGYKADQNQISKIIEANISEHFKVRDTNLSASRSE 90
           +W +W +RN            KV   G +     +   I    + H   +  +  + RS+
Sbjct: 1   MWRLWKSRNEFLFQQIDRFPWKVAQKGEQEATEWVETTINDTANSHSTEQPNDRPSGRSK 60

Query: 91  SDRSQYLWSPPPPPFLKLNSDASWSSSEEIGGLGWTVRDSSGSLVFAGNMKTKKNWETLE 149
                  WSPPP  +LK N D+ +    +     W +RDS+G ++ +G  K ++++  L+
Sbjct: 61  E------WSPPPEGYLKCNFDSGYVQGRDYTSTCWIIRDSNGHVIHSGCAKLQQSYSALQ 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CQG04.5e-1933.51uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J5VSP25.9e-1931.51Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51717 PE=4 S... [more]
A0A6J1DNV92.3e-1828.74uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J5WPU62.9e-1830.59Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=... [more]
A0A6J5XPQ23.8e-1834.20RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCU... [more]
Match NameE-valueIdentityDescription
XP_015382610.13.2e-1930.58uncharacterized protein LOC107175578 [Citrus sinensis][more]
XP_015385738.19.4e-1930.84uncharacterized protein LOC107177034 [Citrus sinensis][more]
XP_015385737.19.4e-1930.10uncharacterized protein LOC107177033 [Citrus sinensis][more]
XP_022143317.19.4e-1933.51uncharacterized protein LOC111013216 [Momordica charantia][more]
CAB4291403.11.2e-1831.51unnamed protein product [Prunus armeniaca][more]
Match NameE-valueIdentityDescription
AT4G29090.11.5e-1424.74Ribonuclease H-like superfamily protein [more]
AT2G34320.11.8e-1223.71Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT3G09510.11.3e-1026.96Ribonuclease H-like superfamily protein [more]
AT5G65005.13.6e-0822.73Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT4G09775.11.4e-0724.62BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily prot... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 94..226
e-value: 7.6E-12
score: 47.3
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 97..222
e-value: 1.9E-22
score: 79.4
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 82..224
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 82..224
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 96..220
e-value: 5.02619E-19
score: 78.51
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 94..225

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g004760.1Lcy10g004760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity