Lcy10g004760 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGTGTAAGTTCTCTAAGAAAATCTGGTTGAAGTTTCTCCCTAATGTTGGTTCCCTTTTTTACATATGCAGGCCTGCGTGGGATGCTCTATTGATTTGGGAAGGTCTAGTGGAAAGACTCGAGGAGGAAGAGATAAGCATCACCATCCTAATTCTATGGAATATTTGGACAACTCGGAACAAGGTGATCAACAATGGCTACAAAGCAGATCAAAATCAAATCAGTAAAATTATTGAAGCCAACATATCCGAGCATTTCAAGGTTAGAGATACTAACCTGAGTGCTTCTAGATCGGAGAGTGATCGGAGTCAATATTTGTGGTCTCCTCCTCCCCCACCTTTTCTGAAGCTGAATTCCGATGCCTCTTGGAGCAGTTCAGAAGAAATTGGGGGCTTAGGTTGGACGGTTCGTGACTCCTCAGGGTCTCTGGTATTCGCCGGCAACATGAAGACAAAGAAGAATTGGGAAACGTTGGAGTTGGAAGCTCTAGCTATGAAGGAAGGGTTGTCTTCTTTCTTGCAAAATAGCGCATGCAAGGGTCGCCCTCTTGTGGTTGAATCGGACTCGAGCACTCTGATTAAGTTGATCCAAAATCAAGAGTCTGATCTCTCTGAGGTAAGAAGCATTGTGGAAGAGATTGAGCTTCTGGCAAGGAGCGCAATAGGAATCTCCTTCGTTTGGTGTTCGAGAAGCTGCAATCGAGCAACCCACACCCTTGCTAAGGATGCGAGATTGGCAGGAACTATAGAGTTTCCTTTGATTTTTGTTGATGGTACCTTTGTATTCCCTGTTGGGAGGAGGTGGTTTTGTTGGGCAATCTGTTTTGCCAAAGCTAGCTCTATTATTAATGAGGAAAAAAAGTTTATTGCTGGTTGTTAG ATGGGAGTGCCTGCGTGGGATGCTCTATTGATTTGGGAAGGTCTAGTGGAAAGACTCGAGGAGGAAGAGATAAGCATCACCATCCTAATTCTATGGAATATTTGGACAACTCGGAACAAGGTGATCAACAATGGCTACAAAGCAGATCAAAATCAAATCAGTAAAATTATTGAAGCCAACATATCCGAGCATTTCAAGGTTAGAGATACTAACCTGAGTGCTTCTAGATCGGAGAGTGATCGGAGTCAATATTTGTGGTCTCCTCCTCCCCCACCTTTTCTGAAGCTGAATTCCGATGCCTCTTGGAGCAGTTCAGAAGAAATTGGGGGCTTAGGTTGGACGGTTCGTGACTCCTCAGGGTCTCTGGTATTCGCCGGCAACATGAAGACAAAGAAGAATTGGGAAACGTTGGAGTTGGAAGCTCTAGCTATGAAGGAAGGGTTGTCTTCTTTCTTGCAAAATAGCGCATGCAAGGGTCGCCCTCTTGTGGTTGAATCGGACTCGAGCACTCTGATTAAGTTGATCCAAAATCAAGAGTCTGATCTCTCTGAGGTAAGAAGCATTGTGGAAGAGATTGAGCTTCTGGCAAGGAGCGCAATAGGAATCTCCTTCGTTTGGTGTTCGAGAAGCTGCAATCGAGCAACCCACACCCTTGCTAAGGATGCGAGATTGGCAGGAACTATAGAGTTTCCTTTGATTTTTGTTGATGGTACCTTTGTATTCCCTGTTGGGAGGAGGTGGTTTTGTTGGGCAATCTGTTTTGCCAAAGCTAGCTCTATTATTAATGAGGAAAAAAAGTTTATTGCTGGTTGTTAG ATGGGAGTGCCTGCGTGGGATGCTCTATTGATTTGGGAAGGTCTAGTGGAAAGACTCGAGGAGGAAGAGATAAGCATCACCATCCTAATTCTATGGAATATTTGGACAACTCGGAACAAGGTGATCAACAATGGCTACAAAGCAGATCAAAATCAAATCAGTAAAATTATTGAAGCCAACATATCCGAGCATTTCAAGGTTAGAGATACTAACCTGAGTGCTTCTAGATCGGAGAGTGATCGGAGTCAATATTTGTGGTCTCCTCCTCCCCCACCTTTTCTGAAGCTGAATTCCGATGCCTCTTGGAGCAGTTCAGAAGAAATTGGGGGCTTAGGTTGGACGGTTCGTGACTCCTCAGGGTCTCTGGTATTCGCCGGCAACATGAAGACAAAGAAGAATTGGGAAACGTTGGAGTTGGAAGCTCTAGCTATGAAGGAAGGGTTGTCTTCTTTCTTGCAAAATAGCGCATGCAAGGGTCGCCCTCTTGTGGTTGAATCGGACTCGAGCACTCTGATTAAGTTGATCCAAAATCAAGAGTCTGATCTCTCTGAGGTAAGAAGCATTGTGGAAGAGATTGAGCTTCTGGCAAGGAGCGCAATAGGAATCTCCTTCGTTTGGTGTTCGAGAAGCTGCAATCGAGCAACCCACACCCTTGCTAAGGATGCGAGATTGGCAGGAACTATAGAGTTTCCTTTGATTTTTGTTGATGGTACCTTTGTATTCCCTGTTGGGAGGAGGTGGTTTTGTTGGGCAATCTGTTTTGCCAAAGCTAGCTCTATTATTAATGAGGAAAAAAAGTTTATTGCTGGTTGTTAG MGVPAWDALLIWEGLVERLEEEEISITILILWNIWTTRNKVINNGYKADQNQISKIIEANISEHFKVRDTNLSASRSESDRSQYLWSPPPPPFLKLNSDASWSSSEEIGGLGWTVRDSSGSLVFAGNMKTKKNWETLELEALAMKEGLSSFLQNSACKGRPLVVESDSSTLIKLIQNQESDLSEVRSIVEEIELLARSAIGISFVWCSRSCNRATHTLAKDARLAGTIEFPLIFVDGTFVFPVGRRWFCWAICFAKASSIINEEKKFIAGC Homology
BLAST of Lcy10g004760 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 4.5e-19 Identity = 62/185 (33.51%), Postives = 96/185 (51.89%), Query Frame = 0
BLAST of Lcy10g004760 vs. ExPASy TrEMBL
Match: A0A6J5VSP2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51717 PE=4 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 5.9e-19 Identity = 69/219 (31.51%), Postives = 107/219 (48.86%), Query Frame = 0
BLAST of Lcy10g004760 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 2.3e-18 Identity = 73/254 (28.74%), Postives = 119/254 (46.85%), Query Frame = 0
BLAST of Lcy10g004760 vs. ExPASy TrEMBL
Match: A0A6J5WPU6 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS20372 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 2.9e-18 Identity = 67/219 (30.59%), Postives = 106/219 (48.40%), Query Frame = 0
BLAST of Lcy10g004760 vs. ExPASy TrEMBL
Match: A0A6J5XPQ2 (RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS35944 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 3.8e-18 Identity = 66/193 (34.20%), Postives = 100/193 (51.81%), Query Frame = 0
BLAST of Lcy10g004760 vs. NCBI nr
Match: XP_015382610.1 (uncharacterized protein LOC107175578 [Citrus sinensis]) HSP 1 Score: 106.7 bits (265), Expect = 3.2e-19 Identity = 63/206 (30.58%), Postives = 115/206 (55.83%), Query Frame = 0
BLAST of Lcy10g004760 vs. NCBI nr
Match: XP_015385738.1 (uncharacterized protein LOC107177034 [Citrus sinensis]) HSP 1 Score: 105.1 bits (261), Expect = 9.4e-19 Identity = 66/214 (30.84%), Postives = 107/214 (50.00%), Query Frame = 0
BLAST of Lcy10g004760 vs. NCBI nr
Match: XP_015385737.1 (uncharacterized protein LOC107177033 [Citrus sinensis]) HSP 1 Score: 105.1 bits (261), Expect = 9.4e-19 Identity = 62/206 (30.10%), Postives = 106/206 (51.46%), Query Frame = 0
BLAST of Lcy10g004760 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia]) HSP 1 Score: 105.1 bits (261), Expect = 9.4e-19 Identity = 62/185 (33.51%), Postives = 96/185 (51.89%), Query Frame = 0
BLAST of Lcy10g004760 vs. NCBI nr
Match: CAB4291403.1 (unnamed protein product [Prunus armeniaca]) HSP 1 Score: 104.8 bits (260), Expect = 1.2e-18 Identity = 69/219 (31.51%), Postives = 107/219 (48.86%), Query Frame = 0
BLAST of Lcy10g004760 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 77.8 bits (190), Expect = 1.5e-14 Identity = 48/194 (24.74%), Postives = 96/194 (49.48%), Query Frame = 0
BLAST of Lcy10g004760 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 70.9 bits (172), Expect = 1.8e-12 Identity = 46/194 (23.71%), Postives = 94/194 (48.45%), Query Frame = 0
BLAST of Lcy10g004760 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 64.7 bits (156), Expect = 1.3e-10 Identity = 62/230 (26.96%), Postives = 98/230 (42.61%), Query Frame = 0
BLAST of Lcy10g004760 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 56.6 bits (135), Expect = 3.6e-08 Identity = 45/198 (22.73%), Postives = 88/198 (44.44%), Query Frame = 0
BLAST of Lcy10g004760 vs. TAIR 10
Match: AT4G09775.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 54.7 bits (130), Expect = 1.4e-07 Identity = 32/130 (24.62%), Postives = 56/130 (43.08%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|