|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCGTCTCTCGTTCTCCTCCTCTCGGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTCCCTCTTCCGCCGCCGCCTCCGCCGCCCTCTGCTTGTGACGCCGTGAAGCCGCCGCCGAGTGAGTGCCACAAGAGTCGGATCTGCTTCGATGAGACTGAAATGGATGAGTTTCTCAAGGACTCTAGGGTTTGTGTCGATTTAATTTGGCCCTAATTTCAAATTCGAGATACCTCCACTCCTGGATTTTTCTTCCCTATGTGGTTGCTCTGTAGTTGAATTGTAGTGTAGATTTATTTGTTCATATCTTTTTTCTTCTTCTCTTTTCAGAAAAAACTTGTCTGCATATGTCGGGATCTCTTTGCATACCACCGTTAA mRNA sequence ATGGCGTCTCTCGTTCTCCTCCTCTCGGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTCCCTCTTCCGCCGCCGCCTCCGCCGCCCTCTGCTTGTGACGCCGTGAAGCCGCCGCCGAGTGAGTGCCACAAGAGTCGGATCTGCTTCGATGAGACTGAAATGGATGAGTTTCTCAAGGACTCTAGGAAAAAACTTGTCTGCATATGTCGGGATCTCTTTGCATACCACCGTTAA Coding sequence (CDS) ATGGCGTCTCTCGTTCTCCTCCTCTCGGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTCCCTCTTCCGCCGCCGCCTCCGCCGCCCTCTGCTTGTGACGCCGTGAAGCCGCCGCCGAGTGAGTGCCACAAGAGTCGGATCTGCTTCGATGAGACTGAAATGGATGAGTTTCTCAAGGACTCTAGGAAAAAACTTGTCTGCATATGTCGGGATCTCTTTGCATACCACCGTTAA Protein sequence MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKPPPSECHKSRICFDETEMDEFLKDSRKKLVCICRDLFAYHR
Homology
BLAST of Lcy10g004490 vs. ExPASy TrEMBL
Match: A0A0A0LHI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09 Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 0
Query: 1 MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKP-----PPSEC-----HKS 60
MASL+LLLS+L+RHH+TNPDY LTLP PP P S+ + P S+C +K+
Sbjct: 1 MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60
Query: 61 RICFDETEMDEFLKDSRKKLVCICRDL 78
RIC DE MDEFLK+SR +C DL
Sbjct: 61 RICADENVMDEFLKESR-----VCVDL 82
BLAST of Lcy10g004490 vs. NCBI nr
Match: XP_038904495.1 (uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida]) HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15 Identity = 49/73 (67.12%), Postives = 55/73 (75.34%), Query Frame = 0
Query: 1 MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKP----PPSECH--KSRICF 60
MASLVLLLSEL+RHHNTNPDYWLT+PLPPPP PP +V P C+ KSRIC
Sbjct: 1 MASLVLLLSELLRHHNTNPDYWLTIPLPPPPSPPRTSSSVAGKSLLPSERCYSNKSRICA 60
Query: 61 DETEMDEFLKDSR 68
DET +DEFLK+SR
Sbjct: 61 DETVIDEFLKESR 73
BLAST of Lcy10g004490 vs. NCBI nr
Match: KAE8651190.1 (hypothetical protein Csa_001669 [Cucumis sativus]) HSP 1 Score: 70.9 bits (172), Expect = 5.9e-09 Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 0
Query: 1 MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPPPSACDAVKP-----PPSEC-----HKS 60
MASL+LLLS+L+RHH+TNPDY LTLP PP P S+ + P S+C +K+
Sbjct: 1 MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60
Query: 61 RICFDETEMDEFLKDSR 68
RIC DE MDEFLK+SR
Sbjct: 61 RICADENVMDEFLKESR 77
BLAST of Lcy10g004490 vs. NCBI nr
Match: KAG6580906.1 (hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08 Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 0
Query: 1 MASLVLLLSELVRHHNTNPDYWLTLPLP-PPPPPPSACDAV-KPPPSECHKS 51
MASLVLLLSELVRHHNTNPDYWLTLPLP P PPPPS+ AV K S+C +
Sbjct: 1 MASLVLLLSELVRHHNTNPDYWLTLPLPSPTPPPPSSDSAVAKSLSSKCQNN 52
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LHI4 | 1.3e-09 | 51.72 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_038904495.1 | 1.5e-15 | 67.12 | uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida] | [more] |
| KAE8651190.1 | 5.9e-09 | 54.55 | hypothetical protein Csa_001669 [Cucumis sativus] | [more] |
| KAG6580906.1 | 1.7e-08 | 75.00 | hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
|
