Lcy10g004400 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g004400
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr10: 10093451 .. 10094212 (-)
RNA-Seq ExpressionLcy10g004400
SyntenyLcy10g004400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCTTGGGGGTCTAAAGTTGGGCAATTTGAGAACTCGAAATACAGCCTTGCTTGCCAAGTGGCTTTGGCATTTCCGCCTCGAATCTGATTCTCTTTTGGTTAGGATCATCATGAGTAAATATGGTCAACATCCTTTCATGTGGCTATCTGATGGGGTCAGAGGCACCTTCAGGAATCCTTGGAAAGACATTTCTTGGAGCTCCCCTCTTTCTCCTCCTTGGTCCAGTGCACAGTGGGTTGACGGGGGGCTATTTTTTTTTTGGGAGGATTTGTGGGTAGGGGATTGTTCCCTCTGCTCCTTGTTCCCGAGTCTATATCATTTATCATCGATGAAGAATCGCACTATGGCTGACATCCTTGGTCCCATGGGGAGTTTCACCTCGTTCTCCTTCGGTTTTCTTCGTTCGTTATCTGATAGAGAAACCACGAACATCATAGCCCTTTTATCTCTGCTTGAGGAGGTTAGCCTTAATCCGAACAAGAAAGATGTTCGCTTCTGGAGTTTCGACCCCTCAGCGGGCTTTTCTTGCAAGTTGTTCTTTTATTTTTTGGTCAATCCTTCCCCAGTTAGAGAGTCTATCTTTTCTTGTCTATGGAAGGTTAAAGTTCCAAAGAAAGTCCTATTCTTTGTTTGGCAGGTCATCTTGGGTCGTGTTAACACTTTCGATAAGCTTTCGAGAGTGAAGGCTCCCGTGGTTGGCCCTTTCTGTTGCATTCTATGTCAGAAGGTGAAGGAAGATATTGATCATTTGTTATAG

mRNA sequence

ATGAGTCTTGGGGGTCTAAAGTTGGGCAATTTGAGAACTCGAAATACAGCCTTGCTTGCCAAGTGGCTTTGGCATTTCCGCCTCGAATCTGATTCTCTTTTGGTTAGGATCATCATGAGTAAATATGGTCAACATCCTTTCATGTGGCTATCTGATGGGGTCAGAGGCACCTTCAGGAATCCTTGGAAAGACATTTCTTGGAGCTCCCCTCTTTCTCCTCCTTGGTCCAGTGCACAGTGGGTTGACGGGGGGCTATTTTTTTTTTGGGAGGATTTGTGGGTAGGGGATTGTTCCCTCTGCTCCTTGTTCCCGAGTCTATATCATTTATCATCGATGAAGAATCGCACTATGGCTGACATCCTTGGTCCCATGGGGAGTTTCACCTCGTTCTCCTTCGGTTTTCTTCGTTCGTTATCTGATAGAGAAACCACGAACATCATAGCCCTTTTATCTCTGCTTGAGGAGGTTAGCCTTAATCCGAACAAGAAAGATGTTCGCTTCTGGAGTTTCGACCCCTCAGCGGGCTTTTCTTGCAAGTTGTTCTTTTATTTTTTGGTCAATCCTTCCCCAGTTAGAGAGTCTATCTTTTCTTGTCTATGGAAGGTTAAAGTTCCAAAGAAAGTCCTATTCTTTGTTTGGCAGGTCATCTTGGGTCGTGTTAACACTTTCGATAAGCTTTCGAGAGTGAAGGCTCCCGTGGTTGGCCCTTTCTGTTGCATTCTATGTCAGAAGGTGAAGGAAGATATTGATCATTTGTTATAG

Coding sequence (CDS)

ATGAGTCTTGGGGGTCTAAAGTTGGGCAATTTGAGAACTCGAAATACAGCCTTGCTTGCCAAGTGGCTTTGGCATTTCCGCCTCGAATCTGATTCTCTTTTGGTTAGGATCATCATGAGTAAATATGGTCAACATCCTTTCATGTGGCTATCTGATGGGGTCAGAGGCACCTTCAGGAATCCTTGGAAAGACATTTCTTGGAGCTCCCCTCTTTCTCCTCCTTGGTCCAGTGCACAGTGGGTTGACGGGGGGCTATTTTTTTTTTGGGAGGATTTGTGGGTAGGGGATTGTTCCCTCTGCTCCTTGTTCCCGAGTCTATATCATTTATCATCGATGAAGAATCGCACTATGGCTGACATCCTTGGTCCCATGGGGAGTTTCACCTCGTTCTCCTTCGGTTTTCTTCGTTCGTTATCTGATAGAGAAACCACGAACATCATAGCCCTTTTATCTCTGCTTGAGGAGGTTAGCCTTAATCCGAACAAGAAAGATGTTCGCTTCTGGAGTTTCGACCCCTCAGCGGGCTTTTCTTGCAAGTTGTTCTTTTATTTTTTGGTCAATCCTTCCCCAGTTAGAGAGTCTATCTTTTCTTGTCTATGGAAGGTTAAAGTTCCAAAGAAAGTCCTATTCTTTGTTTGGCAGGTCATCTTGGGTCGTGTTAACACTTTCGATAAGCTTTCGAGAGTGAAGGCTCCCGTGGTTGGCCCTTTCTGTTGCATTCTATGTCAGAAGGTGAAGGAAGATATTGATCATTTGTTATAG

Protein sequence

MSLGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSDGVRGTFRNPWKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADILGPMGSFTSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKLFFYFLVNPSPVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLSRVKAPVVGPFCCILCQKVKEDIDHLL
Homology
BLAST of Lcy10g004400 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-09
Identity = 65/258 (25.19%), Postives = 105/258 (40.70%), Query Frame = 0

Query: 4   GGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKY--GQ-HPFMWLSDGVRGTFRN 63
           GGL +   ++ N AL++K  W    E +SL   ++  KY  G+     WL    +G++ +
Sbjct: 99  GGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRWLIP--KGSWSS 158

Query: 64  PWKDISWSSPLSPPWSSAQWV--DGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMA 123
            W+ I+             W+  DG    FW D WV           L  L + +  T  
Sbjct: 159 TWRSIA-IGLRDVVSHGVGWIPGDGQQIRFWTDRWVSG-------KPLLELDNGERPTDC 218

Query: 124 DILGPMGSFTSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSC 183
           D +     +     G+  +  D  TTN   L      + L    +D   W F     FS 
Sbjct: 219 DTVVAKDLWIP-GRGWDFAKIDPYTTNNTRLELRAVVLDLVTGARDRLSWKFSQDGQFSV 278

Query: 184 KLFFYFLV---NPSPVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLSRVKAPVVG 243
           +  +  L     P P   S F+CLWKV+VP++V  F+W  ++G      +  R +  +  
Sbjct: 279 RSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLW--LVGNQAVMTEEERHRRHLSA 338

Query: 244 PFCCILCQKVKEDIDHLL 254
              C +C+   E + H+L
Sbjct: 339 SNVCQVCKGGVESMLHVL 343

BLAST of Lcy10g004400 vs. ExPASy TrEMBL
Match: M5WDM3 (zf-RVT domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa017805mg PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-39
Identity = 102/254 (40.16%), Postives = 136/254 (53.54%), Query Frame = 0

Query: 4   GGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMW-LSDGVRGTFRNPW 63
           GGL +G+LR R+TAL AKWLW F +E  +L  ++I S YG     W     +RGT RNPW
Sbjct: 115 GGLGVGSLRARSTALRAKWLWRFPIEPHALWHKVIRSIYGMDTNGWDAKPAIRGTCRNPW 174

Query: 64  KDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADILG 123
           +DIS    L       +   G    FWED W     L  +FP L++LSS +N  ++    
Sbjct: 175 RDISSGYNLFLQGCVFEVGCGVRVRFWEDDWSQGGILKEVFPRLFNLSSKQNHNISSFTD 234

Query: 124 PMGSFTSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKLFF 183
             G   S+ FGF R+L++ E      LL LLE V L  ++ D R W  DPS  FSC  F 
Sbjct: 235 SDGFPISWEFGFRRNLNELEIEEAARLLDLLEGVRLITSRLDKRRWKLDPSGLFSCHSFC 294

Query: 184 YFLVNPSPVRE-SIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLSRVKAP--VVGPFCC 243
             + N       S ++ +WK K P KV  FVWQ +LG++NT D L R + P   + P  C
Sbjct: 295 SHIQNSGEGEVFSPYTQIWKAKTPPKVKIFVWQAVLGKLNTGDTLQR-RCPYLCLSPHWC 354

Query: 244 ILCQKVKEDIDHLL 254
           +LC    E++DHLL
Sbjct: 355 VLCNMAGENVDHLL 367

BLAST of Lcy10g004400 vs. ExPASy TrEMBL
Match: A5BZG3 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_042643 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.8e-39
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0

Query: 3   LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
           +GGL  G    RN+ALL KWLW F  E   L  ++I S YG HP  W ++  VR + R P
Sbjct: 356 MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 415

Query: 63  WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
           WK I+       P+      +G    FWEDLW G+ +LC+ F  LY +SS++N T++++L
Sbjct: 416 WKAIAQVFQEFSPFVRLVVGNGERIXFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 475

Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
           G   SF  S++F F R+L+D E   +  L+S L  V L+P+  D R WS   S  FS K 
Sbjct: 476 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 535

Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
           FFY L   S P+       LW  KVP KV    W V  G+VNT DKL  R     + P  
Sbjct: 536 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 595

Query: 243 CILCQKVKEDIDHL 253
           CILC++  E IDHL
Sbjct: 596 CILCKRNGESIDHL 607

BLAST of Lcy10g004400 vs. ExPASy TrEMBL
Match: A0A438GJ06 (Flowering time control protein FY OS=Vitis vinifera OX=29760 GN=FY_4 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.8e-39
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0

Query: 3   LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
           +GGL  G    RN+ALL KWLW F  E   L  ++I S YG HP  W ++  VR + R P
Sbjct: 584 MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 643

Query: 63  WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
           WK I+       P+      +G    FWEDLW G+ +LC+ F  LY +SS++N T++++L
Sbjct: 644 WKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 703

Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
           G   SF  S++F F R+L+D E   +  L+S L  V L+P+  D R WS   S  FS K 
Sbjct: 704 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 763

Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
           FFY L   S P+       LW  KVP KV    W V  G+VNT DKL  R     + P  
Sbjct: 764 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 823

Query: 243 CILCQKVKEDIDHL 253
           CILC++  E IDHL
Sbjct: 824 CILCKRNGESIDHL 835

BLAST of Lcy10g004400 vs. ExPASy TrEMBL
Match: A5AKV7 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_008255 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.8e-39
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0

Query: 3   LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
           +GGL  G    RN+ALL KWLW F  E   L  ++I S YG HP  W ++  VR + R P
Sbjct: 338 MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 397

Query: 63  WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
           WK I+       P+      +G    FWEDLW G+ +LC+ F  LY +SS++N T++++L
Sbjct: 398 WKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 457

Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
           G   SF  S++F F R+L+D E   +  L+S L  V L+P+  D R WS   S  FS K 
Sbjct: 458 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 517

Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
           FFY L   S P+       LW  KVP KV    W V  G+VNT DKL  R     + P  
Sbjct: 518 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 577

Query: 243 CILCQKVKEDIDHL 253
           CILC++  E IDHL
Sbjct: 578 CILCKRNGESIDHL 589

BLAST of Lcy10g004400 vs. ExPASy TrEMBL
Match: A0A438I233 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_591 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.8e-39
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0

Query: 3   LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
           +GGL  G    RN+ALL KWLW F  E   L  ++I S YG HP  W ++  VR + R P
Sbjct: 1   MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 60

Query: 63  WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
           WK I+       P+      +G    FWEDLW G+ +LC+ F  LY +SS++N T++++L
Sbjct: 61  WKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 120

Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
           G   SF  S++F F R+L+D E   +  L+S L  V L+P+  D R WS   S  FS K 
Sbjct: 121 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 180

Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
           FFY L   S P+       LW  KVP KV    W V  G+VNT DKL  R     + P  
Sbjct: 181 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 240

Query: 243 CILCQKVKEDIDHL 253
           CILC++  E IDHL
Sbjct: 241 CILCKRNGESIDHL 252

BLAST of Lcy10g004400 vs. NCBI nr
Match: CAN75156.1 (hypothetical protein VITISV_042643 [Vitis vinifera])

HSP 1 Score: 172.2 bits (435), Expect = 5.8e-39
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0

Query: 3   LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
           +GGL  G    RN+ALL KWLW F  E   L  ++I S YG HP  W ++  VR + R P
Sbjct: 356 MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 415

Query: 63  WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
           WK I+       P+      +G    FWEDLW G+ +LC+ F  LY +SS++N T++++L
Sbjct: 416 WKAIAQVFQEFSPFVRLVVGNGERIXFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 475

Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
           G   SF  S++F F R+L+D E   +  L+S L  V L+P+  D R WS   S  FS K 
Sbjct: 476 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 535

Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
           FFY L   S P+       LW  KVP KV    W V  G+VNT DKL  R     + P  
Sbjct: 536 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 595

Query: 243 CILCQKVKEDIDHL 253
           CILC++  E IDHL
Sbjct: 596 CILCKRNGESIDHL 607

BLAST of Lcy10g004400 vs. NCBI nr
Match: RVW90769.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-38
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0

Query: 3   LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
           +GGL  G    RN+ALL KWLW F  E   L  ++I S YG HP  W ++  VR + R P
Sbjct: 1   MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 60

Query: 63  WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
           WK I+       P+      +G    FWEDLW G+ +LC+ F  LY +SS++N T++++L
Sbjct: 61  WKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 120

Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
           G   SF  S++F F R+L+D E   +  L+S L  V L+P+  D R WS   S  FS K 
Sbjct: 121 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 180

Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
           FFY L   S P+       LW  KVP KV    W V  G+VNT DKL  R     + P  
Sbjct: 181 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 240

Query: 243 CILCQKVKEDIDHL 253
           CILC++  E IDHL
Sbjct: 241 CILCKRNGESIDHL 252

BLAST of Lcy10g004400 vs. NCBI nr
Match: CAN73503.1 (hypothetical protein VITISV_008255 [Vitis vinifera])

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-38
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0

Query: 3   LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
           +GGL  G    RN+ALL KWLW F  E   L  ++I S YG HP  W ++  VR + R P
Sbjct: 338 MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 397

Query: 63  WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
           WK I+       P+      +G    FWEDLW G+ +LC+ F  LY +SS++N T++++L
Sbjct: 398 WKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 457

Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
           G   SF  S++F F R+L+D E   +  L+S L  V L+P+  D R WS   S  FS K 
Sbjct: 458 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 517

Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
           FFY L   S P+       LW  KVP KV    W V  G+VNT DKL  R     + P  
Sbjct: 518 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 577

Query: 243 CILCQKVKEDIDHL 253
           CILC++  E IDHL
Sbjct: 578 CILCKRNGESIDHL 589

BLAST of Lcy10g004400 vs. NCBI nr
Match: RVW72196.1 (Flowering time control protein FY [Vitis vinifera])

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-38
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0

Query: 3   LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
           +GGL  G    RN+ALL KWLW F  E   L  ++I S YG HP  W ++  VR + R P
Sbjct: 584 MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 643

Query: 63  WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
           WK I+       P+      +G    FWEDLW G+ +LC+ F  LY +SS++N T++++L
Sbjct: 644 WKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 703

Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
           G   SF  S++F F R+L+D E   +  L+S L  V L+P+  D R WS   S  FS K 
Sbjct: 704 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 763

Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
           FFY L   S P+       LW  KVP KV    W V  G+VNT DKL  R     + P  
Sbjct: 764 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 823

Query: 243 CILCQKVKEDIDHL 253
           CILC++  E IDHL
Sbjct: 824 CILCKRNGESIDHL 835

BLAST of Lcy10g004400 vs. NCBI nr
Match: VVA30963.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-38
Identity = 99/251 (39.44%), Postives = 137/251 (54.58%), Query Frame = 0

Query: 4   GGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMW-LSDGVRGTFRNPW 63
           GGL +G+LR RN AL AKWLW F LE++SL  RII SKYG     W     V+ + RNPW
Sbjct: 176 GGLGIGSLRERNEALRAKWLWRFPLETNSLWHRIIKSKYGIDSNGWDTKQIVKVSCRNPW 235

Query: 64  KDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADILG 123
           ++IS               +G    FWEDLW+ +  L  LFP L  LS  KN+++A    
Sbjct: 236 REISKGYNSFLQCCRFSVGNGEKIRFWEDLWLKEGILKDLFPRLSSLSRRKNQSIARFAN 295

Query: 124 PMGSFTSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKLFF 183
                 ++ F F R+LS+ E   ++ LL +L  V L  ++ D R W  +    FSCK F 
Sbjct: 296 NHEMPLNWDFDFRRNLSEAEIAEVVILLDILGNVRLYGSRPDRRSWEIEEQGSFSCKSFR 355

Query: 184 YFLVNPSPVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLSRVKAPV-VGPFCCIL 243
            FL++ +      FS +WK K P K+ FFVW    GR+NT D + R +  + + P  C+L
Sbjct: 356 SFLLSTTRDVFPPFSSIWKAKTPPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVL 415

Query: 244 CQKVKEDIDHL 253
           C++  E+IDHL
Sbjct: 416 CKENAENIDHL 426

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P0C2F61.3e-0925.19Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
Match NameE-valueIdentityDescription
M5WDM32.2e-3940.16zf-RVT domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_p... [more]
A5BZG32.8e-3941.73Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... [more]
A0A438GJ064.8e-3941.73Flowering time control protein FY OS=Vitis vinifera OX=29760 GN=FY_4 PE=4 SV=1[more]
A5AKV74.8e-3941.73Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... [more]
A0A438I2334.8e-3941.73Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_591 P... [more]
Match NameE-valueIdentityDescription
CAN75156.15.8e-3941.73hypothetical protein VITISV_042643 [Vitis vinifera][more]
RVW90769.11.0e-3841.73putative ribonuclease H protein [Vitis vinifera][more]
CAN73503.11.0e-3841.73hypothetical protein VITISV_008255 [Vitis vinifera][more]
RVW72196.11.0e-3841.73Flowering time control protein FY [Vitis vinifera][more]
VVA30963.11.3e-3839.44Hypothetical predicted protein, partial [Prunus dulcis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 183..253
e-value: 6.9E-12
score: 45.9
NoneNo IPR availablePANTHERPTHR36617PROTEIN, PUTATIVE-RELATEDcoord: 59..236
NoneNo IPR availablePANTHERPTHR36617:SF4SUBFAMILY NOT NAMEDcoord: 59..236

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g004400.1Lcy10g004400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process