Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCTTGGGGGTCTAAAGTTGGGCAATTTGAGAACTCGAAATACAGCCTTGCTTGCCAAGTGGCTTTGGCATTTCCGCCTCGAATCTGATTCTCTTTTGGTTAGGATCATCATGAGTAAATATGGTCAACATCCTTTCATGTGGCTATCTGATGGGGTCAGAGGCACCTTCAGGAATCCTTGGAAAGACATTTCTTGGAGCTCCCCTCTTTCTCCTCCTTGGTCCAGTGCACAGTGGGTTGACGGGGGGCTATTTTTTTTTTGGGAGGATTTGTGGGTAGGGGATTGTTCCCTCTGCTCCTTGTTCCCGAGTCTATATCATTTATCATCGATGAAGAATCGCACTATGGCTGACATCCTTGGTCCCATGGGGAGTTTCACCTCGTTCTCCTTCGGTTTTCTTCGTTCGTTATCTGATAGAGAAACCACGAACATCATAGCCCTTTTATCTCTGCTTGAGGAGGTTAGCCTTAATCCGAACAAGAAAGATGTTCGCTTCTGGAGTTTCGACCCCTCAGCGGGCTTTTCTTGCAAGTTGTTCTTTTATTTTTTGGTCAATCCTTCCCCAGTTAGAGAGTCTATCTTTTCTTGTCTATGGAAGGTTAAAGTTCCAAAGAAAGTCCTATTCTTTGTTTGGCAGGTCATCTTGGGTCGTGTTAACACTTTCGATAAGCTTTCGAGAGTGAAGGCTCCCGTGGTTGGCCCTTTCTGTTGCATTCTATGTCAGAAGGTGAAGGAAGATATTGATCATTTGTTATAG
mRNA sequence
ATGAGTCTTGGGGGTCTAAAGTTGGGCAATTTGAGAACTCGAAATACAGCCTTGCTTGCCAAGTGGCTTTGGCATTTCCGCCTCGAATCTGATTCTCTTTTGGTTAGGATCATCATGAGTAAATATGGTCAACATCCTTTCATGTGGCTATCTGATGGGGTCAGAGGCACCTTCAGGAATCCTTGGAAAGACATTTCTTGGAGCTCCCCTCTTTCTCCTCCTTGGTCCAGTGCACAGTGGGTTGACGGGGGGCTATTTTTTTTTTGGGAGGATTTGTGGGTAGGGGATTGTTCCCTCTGCTCCTTGTTCCCGAGTCTATATCATTTATCATCGATGAAGAATCGCACTATGGCTGACATCCTTGGTCCCATGGGGAGTTTCACCTCGTTCTCCTTCGGTTTTCTTCGTTCGTTATCTGATAGAGAAACCACGAACATCATAGCCCTTTTATCTCTGCTTGAGGAGGTTAGCCTTAATCCGAACAAGAAAGATGTTCGCTTCTGGAGTTTCGACCCCTCAGCGGGCTTTTCTTGCAAGTTGTTCTTTTATTTTTTGGTCAATCCTTCCCCAGTTAGAGAGTCTATCTTTTCTTGTCTATGGAAGGTTAAAGTTCCAAAGAAAGTCCTATTCTTTGTTTGGCAGGTCATCTTGGGTCGTGTTAACACTTTCGATAAGCTTTCGAGAGTGAAGGCTCCCGTGGTTGGCCCTTTCTGTTGCATTCTATGTCAGAAGGTGAAGGAAGATATTGATCATTTGTTATAG
Coding sequence (CDS)
ATGAGTCTTGGGGGTCTAAAGTTGGGCAATTTGAGAACTCGAAATACAGCCTTGCTTGCCAAGTGGCTTTGGCATTTCCGCCTCGAATCTGATTCTCTTTTGGTTAGGATCATCATGAGTAAATATGGTCAACATCCTTTCATGTGGCTATCTGATGGGGTCAGAGGCACCTTCAGGAATCCTTGGAAAGACATTTCTTGGAGCTCCCCTCTTTCTCCTCCTTGGTCCAGTGCACAGTGGGTTGACGGGGGGCTATTTTTTTTTTGGGAGGATTTGTGGGTAGGGGATTGTTCCCTCTGCTCCTTGTTCCCGAGTCTATATCATTTATCATCGATGAAGAATCGCACTATGGCTGACATCCTTGGTCCCATGGGGAGTTTCACCTCGTTCTCCTTCGGTTTTCTTCGTTCGTTATCTGATAGAGAAACCACGAACATCATAGCCCTTTTATCTCTGCTTGAGGAGGTTAGCCTTAATCCGAACAAGAAAGATGTTCGCTTCTGGAGTTTCGACCCCTCAGCGGGCTTTTCTTGCAAGTTGTTCTTTTATTTTTTGGTCAATCCTTCCCCAGTTAGAGAGTCTATCTTTTCTTGTCTATGGAAGGTTAAAGTTCCAAAGAAAGTCCTATTCTTTGTTTGGCAGGTCATCTTGGGTCGTGTTAACACTTTCGATAAGCTTTCGAGAGTGAAGGCTCCCGTGGTTGGCCCTTTCTGTTGCATTCTATGTCAGAAGGTGAAGGAAGATATTGATCATTTGTTATAG
Protein sequence
MSLGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSDGVRGTFRNPWKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADILGPMGSFTSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKLFFYFLVNPSPVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLSRVKAPVVGPFCCILCQKVKEDIDHLL
Homology
BLAST of Lcy10g004400 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 1.3e-09
Identity = 65/258 (25.19%), Postives = 105/258 (40.70%), Query Frame = 0
Query: 4 GGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKY--GQ-HPFMWLSDGVRGTFRN 63
GGL + ++ N AL++K W E +SL ++ KY G+ WL +G++ +
Sbjct: 99 GGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRWLIP--KGSWSS 158
Query: 64 PWKDISWSSPLSPPWSSAQWV--DGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMA 123
W+ I+ W+ DG FW D WV L L + + T
Sbjct: 159 TWRSIA-IGLRDVVSHGVGWIPGDGQQIRFWTDRWVSG-------KPLLELDNGERPTDC 218
Query: 124 DILGPMGSFTSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSC 183
D + + G+ + D TTN L + L +D W F FS
Sbjct: 219 DTVVAKDLWIP-GRGWDFAKIDPYTTNNTRLELRAVVLDLVTGARDRLSWKFSQDGQFSV 278
Query: 184 KLFFYFLV---NPSPVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLSRVKAPVVG 243
+ + L P P S F+CLWKV+VP++V F+W ++G + R + +
Sbjct: 279 RSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLW--LVGNQAVMTEEERHRRHLSA 338
Query: 244 PFCCILCQKVKEDIDHLL 254
C +C+ E + H+L
Sbjct: 339 SNVCQVCKGGVESMLHVL 343
BLAST of Lcy10g004400 vs. ExPASy TrEMBL
Match:
M5WDM3 (zf-RVT domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa017805mg PE=4 SV=1)
HSP 1 Score: 172.6 bits (436), Expect = 2.2e-39
Identity = 102/254 (40.16%), Postives = 136/254 (53.54%), Query Frame = 0
Query: 4 GGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMW-LSDGVRGTFRNPW 63
GGL +G+LR R+TAL AKWLW F +E +L ++I S YG W +RGT RNPW
Sbjct: 115 GGLGVGSLRARSTALRAKWLWRFPIEPHALWHKVIRSIYGMDTNGWDAKPAIRGTCRNPW 174
Query: 64 KDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADILG 123
+DIS L + G FWED W L +FP L++LSS +N ++
Sbjct: 175 RDISSGYNLFLQGCVFEVGCGVRVRFWEDDWSQGGILKEVFPRLFNLSSKQNHNISSFTD 234
Query: 124 PMGSFTSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKLFF 183
G S+ FGF R+L++ E LL LLE V L ++ D R W DPS FSC F
Sbjct: 235 SDGFPISWEFGFRRNLNELEIEEAARLLDLLEGVRLITSRLDKRRWKLDPSGLFSCHSFC 294
Query: 184 YFLVNPSPVRE-SIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLSRVKAP--VVGPFCC 243
+ N S ++ +WK K P KV FVWQ +LG++NT D L R + P + P C
Sbjct: 295 SHIQNSGEGEVFSPYTQIWKAKTPPKVKIFVWQAVLGKLNTGDTLQR-RCPYLCLSPHWC 354
Query: 244 ILCQKVKEDIDHLL 254
+LC E++DHLL
Sbjct: 355 VLCNMAGENVDHLL 367
BLAST of Lcy10g004400 vs. ExPASy TrEMBL
Match:
A5BZG3 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_042643 PE=4 SV=1)
HSP 1 Score: 172.2 bits (435), Expect = 2.8e-39
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0
Query: 3 LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
+GGL G RN+ALL KWLW F E L ++I S YG HP W ++ VR + R P
Sbjct: 356 MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 415
Query: 63 WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
WK I+ P+ +G FWEDLW G+ +LC+ F LY +SS++N T++++L
Sbjct: 416 WKAIAQVFQEFSPFVRLVVGNGERIXFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 475
Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
G SF S++F F R+L+D E + L+S L V L+P+ D R WS S FS K
Sbjct: 476 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 535
Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
FFY L S P+ LW KVP KV W V G+VNT DKL R + P
Sbjct: 536 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 595
Query: 243 CILCQKVKEDIDHL 253
CILC++ E IDHL
Sbjct: 596 CILCKRNGESIDHL 607
BLAST of Lcy10g004400 vs. ExPASy TrEMBL
Match:
A0A438GJ06 (Flowering time control protein FY OS=Vitis vinifera OX=29760 GN=FY_4 PE=4 SV=1)
HSP 1 Score: 171.4 bits (433), Expect = 4.8e-39
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0
Query: 3 LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
+GGL G RN+ALL KWLW F E L ++I S YG HP W ++ VR + R P
Sbjct: 584 MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 643
Query: 63 WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
WK I+ P+ +G FWEDLW G+ +LC+ F LY +SS++N T++++L
Sbjct: 644 WKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 703
Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
G SF S++F F R+L+D E + L+S L V L+P+ D R WS S FS K
Sbjct: 704 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 763
Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
FFY L S P+ LW KVP KV W V G+VNT DKL R + P
Sbjct: 764 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 823
Query: 243 CILCQKVKEDIDHL 253
CILC++ E IDHL
Sbjct: 824 CILCKRNGESIDHL 835
BLAST of Lcy10g004400 vs. ExPASy TrEMBL
Match:
A5AKV7 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_008255 PE=4 SV=1)
HSP 1 Score: 171.4 bits (433), Expect = 4.8e-39
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0
Query: 3 LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
+GGL G RN+ALL KWLW F E L ++I S YG HP W ++ VR + R P
Sbjct: 338 MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 397
Query: 63 WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
WK I+ P+ +G FWEDLW G+ +LC+ F LY +SS++N T++++L
Sbjct: 398 WKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 457
Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
G SF S++F F R+L+D E + L+S L V L+P+ D R WS S FS K
Sbjct: 458 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 517
Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
FFY L S P+ LW KVP KV W V G+VNT DKL R + P
Sbjct: 518 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 577
Query: 243 CILCQKVKEDIDHL 253
CILC++ E IDHL
Sbjct: 578 CILCKRNGESIDHL 589
BLAST of Lcy10g004400 vs. ExPASy TrEMBL
Match:
A0A438I233 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_591 PE=4 SV=1)
HSP 1 Score: 171.4 bits (433), Expect = 4.8e-39
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0
Query: 3 LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
+GGL G RN+ALL KWLW F E L ++I S YG HP W ++ VR + R P
Sbjct: 1 MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 60
Query: 63 WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
WK I+ P+ +G FWEDLW G+ +LC+ F LY +SS++N T++++L
Sbjct: 61 WKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 120
Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
G SF S++F F R+L+D E + L+S L V L+P+ D R WS S FS K
Sbjct: 121 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 180
Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
FFY L S P+ LW KVP KV W V G+VNT DKL R + P
Sbjct: 181 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 240
Query: 243 CILCQKVKEDIDHL 253
CILC++ E IDHL
Sbjct: 241 CILCKRNGESIDHL 252
BLAST of Lcy10g004400 vs. NCBI nr
Match:
CAN75156.1 (hypothetical protein VITISV_042643 [Vitis vinifera])
HSP 1 Score: 172.2 bits (435), Expect = 5.8e-39
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0
Query: 3 LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
+GGL G RN+ALL KWLW F E L ++I S YG HP W ++ VR + R P
Sbjct: 356 MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 415
Query: 63 WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
WK I+ P+ +G FWEDLW G+ +LC+ F LY +SS++N T++++L
Sbjct: 416 WKAIAQVFQEFSPFVRLVVGNGERIXFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 475
Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
G SF S++F F R+L+D E + L+S L V L+P+ D R WS S FS K
Sbjct: 476 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 535
Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
FFY L S P+ LW KVP KV W V G+VNT DKL R + P
Sbjct: 536 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 595
Query: 243 CILCQKVKEDIDHL 253
CILC++ E IDHL
Sbjct: 596 CILCKRNGESIDHL 607
BLAST of Lcy10g004400 vs. NCBI nr
Match:
RVW90769.1 (putative ribonuclease H protein [Vitis vinifera])
HSP 1 Score: 171.4 bits (433), Expect = 1.0e-38
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0
Query: 3 LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
+GGL G RN+ALL KWLW F E L ++I S YG HP W ++ VR + R P
Sbjct: 1 MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 60
Query: 63 WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
WK I+ P+ +G FWEDLW G+ +LC+ F LY +SS++N T++++L
Sbjct: 61 WKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 120
Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
G SF S++F F R+L+D E + L+S L V L+P+ D R WS S FS K
Sbjct: 121 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 180
Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
FFY L S P+ LW KVP KV W V G+VNT DKL R + P
Sbjct: 181 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 240
Query: 243 CILCQKVKEDIDHL 253
CILC++ E IDHL
Sbjct: 241 CILCKRNGESIDHL 252
BLAST of Lcy10g004400 vs. NCBI nr
Match:
CAN73503.1 (hypothetical protein VITISV_008255 [Vitis vinifera])
HSP 1 Score: 171.4 bits (433), Expect = 1.0e-38
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0
Query: 3 LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
+GGL G RN+ALL KWLW F E L ++I S YG HP W ++ VR + R P
Sbjct: 338 MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 397
Query: 63 WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
WK I+ P+ +G FWEDLW G+ +LC+ F LY +SS++N T++++L
Sbjct: 398 WKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 457
Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
G SF S++F F R+L+D E + L+S L V L+P+ D R WS S FS K
Sbjct: 458 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 517
Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
FFY L S P+ LW KVP KV W V G+VNT DKL R + P
Sbjct: 518 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 577
Query: 243 CILCQKVKEDIDHL 253
CILC++ E IDHL
Sbjct: 578 CILCKRNGESIDHL 589
BLAST of Lcy10g004400 vs. NCBI nr
Match:
RVW72196.1 (Flowering time control protein FY [Vitis vinifera])
HSP 1 Score: 171.4 bits (433), Expect = 1.0e-38
Identity = 106/254 (41.73%), Postives = 139/254 (54.72%), Query Frame = 0
Query: 3 LGGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMWLSD-GVRGTFRNP 62
+GGL G RN+ALL KWLW F E L ++I S YG HP W ++ VR + R P
Sbjct: 584 MGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCP 643
Query: 63 WKDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADIL 122
WK I+ P+ +G FWEDLW G+ +LC+ F LY +SS++N T++++L
Sbjct: 644 WKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVL 703
Query: 123 GPMGSF-TSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKL 182
G SF S++F F R+L+D E + L+S L V L+P+ D R WS S FS K
Sbjct: 704 G--NSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKS 763
Query: 183 FFYFLVNPS-PVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLS-RVKAPVVGPFC 242
FFY L S P+ LW KVP KV W V G+VNT DKL R + P
Sbjct: 764 FFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQW 823
Query: 243 CILCQKVKEDIDHL 253
CILC++ E IDHL
Sbjct: 824 CILCKRNGESIDHL 835
BLAST of Lcy10g004400 vs. NCBI nr
Match:
VVA30963.1 (Hypothetical predicted protein, partial [Prunus dulcis])
HSP 1 Score: 171.0 bits (432), Expect = 1.3e-38
Identity = 99/251 (39.44%), Postives = 137/251 (54.58%), Query Frame = 0
Query: 4 GGLKLGNLRTRNTALLAKWLWHFRLESDSLLVRIIMSKYGQHPFMW-LSDGVRGTFRNPW 63
GGL +G+LR RN AL AKWLW F LE++SL RII SKYG W V+ + RNPW
Sbjct: 176 GGLGIGSLRERNEALRAKWLWRFPLETNSLWHRIIKSKYGIDSNGWDTKQIVKVSCRNPW 235
Query: 64 KDISWSSPLSPPWSSAQWVDGGLFFFWEDLWVGDCSLCSLFPSLYHLSSMKNRTMADILG 123
++IS +G FWEDLW+ + L LFP L LS KN+++A
Sbjct: 236 REISKGYNSFLQCCRFSVGNGEKIRFWEDLWLKEGILKDLFPRLSSLSRRKNQSIARFAN 295
Query: 124 PMGSFTSFSFGFLRSLSDRETTNIIALLSLLEEVSLNPNKKDVRFWSFDPSAGFSCKLFF 183
++ F F R+LS+ E ++ LL +L V L ++ D R W + FSCK F
Sbjct: 296 NHEMPLNWDFDFRRNLSEAEIAEVVILLDILGNVRLYGSRPDRRSWEIEEQGSFSCKSFR 355
Query: 184 YFLVNPSPVRESIFSCLWKVKVPKKVLFFVWQVILGRVNTFDKLSRVKAPV-VGPFCCIL 243
FL++ + FS +WK K P K+ FFVW GR+NT D + R + + + P C+L
Sbjct: 356 SFLLSTTRDVFPPFSSIWKAKTPPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVL 415
Query: 244 CQKVKEDIDHL 253
C++ E+IDHL
Sbjct: 416 CKENAENIDHL 426
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P0C2F6 | 1.3e-09 | 25.19 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
Match Name | E-value | Identity | Description | |
M5WDM3 | 2.2e-39 | 40.16 | zf-RVT domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_p... | [more] |
A5BZG3 | 2.8e-39 | 41.73 | Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... | [more] |
A0A438GJ06 | 4.8e-39 | 41.73 | Flowering time control protein FY OS=Vitis vinifera OX=29760 GN=FY_4 PE=4 SV=1 | [more] |
A5AKV7 | 4.8e-39 | 41.73 | Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... | [more] |
A0A438I233 | 4.8e-39 | 41.73 | Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_591 P... | [more] |
Match Name | E-value | Identity | Description | |
CAN75156.1 | 5.8e-39 | 41.73 | hypothetical protein VITISV_042643 [Vitis vinifera] | [more] |
RVW90769.1 | 1.0e-38 | 41.73 | putative ribonuclease H protein [Vitis vinifera] | [more] |
CAN73503.1 | 1.0e-38 | 41.73 | hypothetical protein VITISV_008255 [Vitis vinifera] | [more] |
RVW72196.1 | 1.0e-38 | 41.73 | Flowering time control protein FY [Vitis vinifera] | [more] |
VVA30963.1 | 1.3e-38 | 39.44 | Hypothetical predicted protein, partial [Prunus dulcis] | [more] |
Match Name | E-value | Identity | Description | |