Lcy06g023780 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g023780
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr06: 48423502 .. 48424998 (-)
RNA-Seq Expression	Lcy06g023780
Synteny	Lcy06g023780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCTTCAACGCTGTGAAGAGGAGCAACAACTTCCTCAGAAAACACAGGAAGTGGCCATTTTCACCTTACAAAACCAAATGGCATCAAACTTTCGATCAGGACGAAGCTTTACGAATCCTAAAACAAGCTACAAATTCGCCGGAACAACCCAATTCCGATGAACCCTACCTTCTTTCGGCCCTTGTAAGCTCCTTCAAAGCCTACTGCTGCGACCCAACCCCCAATGCTTACCATTTCGTCCTCAAAACCCTAGCTCGAACCTCCCAATTCCACCACATTCCCATTGTTCTTGATCGCCTCCAACGCGTCGAGAAATTCGAAACCCCAGAGTACATATTTGCCGACCTCATCAAGATTTACGGACAAATTGACAGAATTCAAGATGCTATCACTCTTTTTCGCAGGATTCCCATGTTTAGGTGCGTTCCATCTACGTTCTCGCTCAACTCTTTACTTTCTGTGCTCTGTAGAAATGGCGAAGGTCTTCGAATGGTTCCTGAAATAGTATTGGATAGCCAGACTATGGGTATTAGGCTTGAAGAGTCGACTTTCCGGATACTAATTACTGCTTTATGTAGAATTAATAAAGTTGGGCATGCTATGGAGATTTTCAGTTTTATGATAACTGAAGGCTATGGTCTTAATCCTGGAATATGTTCTTTGATTTTGTCATCGCTGTGCGAGCAAAAGAAATCCTCTGGTAACGAGGTTCTTAGTTTTCTGGAACAAATGAGGCAACAAGGATTCTGTCCCGTTGTTGTGGATTATTCTAATGTAATAAAGTTTTTCGTTAGAAGAGGGATGAGTTCATCTGCTGTTGATCTGTTGAATAAAATGAAGGCCGATGGTTTCAAGCCTGACATTGTTTGTTATACTATGGTCTTGAATGGGGTGATTGCGGAAGGGGATTATAAGATGGCAGACGAACTGTTTGATGAACTGCTTCTATTTGGTTTAGTTCCTGATGTTTATACATATAACGTGTACATATATGGATTATGCAAACAAGGTAACCCAGAAGCGGGAATTCAAATGATTTCGCATATGCAGGAATTGGGGTGCAAACCTGATGTGATTACTTATAATATTCTCTTGGAAACTTTGTGTAAAACCGGGAAGCTTGTTGAGGCGAGGAAGCTTAGAAGTGAGATGCAACTTAAGGGTCTGGCAGAAAACTTGCGGACTTTTAGGATTATGATCAATGGTTTATTTGATAACGGTGATGTAACTGAAGCTTGTGTTCTATTGGAGGAAATGCTAGGAAGTCGTTTCCCTCCTCAGATTTCGACTTTTGGTGAGATACTTTCTTGGTTGTGCAAAAGGGACATGGTAGGCAAAGCACTTGAGTTGCTCAAGCTAATGGTTGGCAAGAACTTTTCCCCAGGTCCCAAGGCTTGGGAAATACTGCTCATGAGCTCTGGAAATGAACTAACTTCTGTTAAGAGTCTTGAAACTACTTTAGGAGATTTAGTAGGCATCGGAAGAAACTGA

mRNA sequence

ATGGCAAGCTTCAACGCTGTGAAGAGGAGCAACAACTTCCTCAGAAAACACAGGAAGTGGCCATTTTCACCTTACAAAACCAAATGGCATCAAACTTTCGATCAGGACGAAGCTTTACGAATCCTAAAACAAGCTACAAATTCGCCGGAACAACCCAATTCCGATGAACCCTACCTTCTTTCGGCCCTTGTAAGCTCCTTCAAAGCCTACTGCTGCGACCCAACCCCCAATGCTTACCATTTCGTCCTCAAAACCCTAGCTCGAACCTCCCAATTCCACCACATTCCCATTGTTCTTGATCGCCTCCAACGCGTCGAGAAATTCGAAACCCCAGAGTACATATTTGCCGACCTCATCAAGATTTACGGACAAATTGACAGAATTCAAGATGCTATCACTCTTTTTCGCAGGATTCCCATGTTTAGGTGCGTTCCATCTACGTTCTCGCTCAACTCTTTACTTTCTGTGCTCTGTAGAAATGGCGAAGGTCTTCGAATGGTTCCTGAAATAGTATTGGATAGCCAGACTATGGGTATTAGGCTTGAAGAGTCGACTTTCCGGATACTAATTACTGCTTTATGTAGAATTAATAAAGTTGGGCATGCTATGGAGATTTTCAGTTTTATGATAACTGAAGGCTATGGTCTTAATCCTGGAATATGTTCTTTGATTTTGTCATCGCTGTGCGAGCAAAAGAAATCCTCTGGTAACGAGGTTCTTAGTTTTCTGGAACAAATGAGGCAACAAGGATTCTGTCCCGTTGTTGTGGATTATTCTAATGTAATAAAGTTTTTCGTTAGAAGAGGGATGAGTTCATCTGCTGTTGATCTGTTGAATAAAATGAAGGCCGATGGTTTCAAGCCTGACATTGTTTGTTATACTATGGTCTTGAATGGGGTGATTGCGGAAGGGGATTATAAGATGGCAGACGAACTGTTTGATGAACTGCTTCTATTTGGTTTAGTTCCTGATGTTTATACATATAACGTGTACATATATGGATTATGCAAACAAGGTAACCCAGAAGCGGGAATTCAAATGATTTCGCATATGCAGGAATTGGGGTGCAAACCTGATGTGATTACTTATAATATTCTCTTGGAAACTTTGTGTAAAACCGGGAAGCTTGTTGAGGCGAGGAAGCTTAGAAGTGAGATGCAACTTAAGGGTCTGGCAGAAAACTTGCGGACTTTTAGGATTATGATCAATGGTTTATTTGATAACGGTGATGTAACTGAAGCTTGTGTTCTATTGGAGGAAATGCTAGGAAGTCGTTTCCCTCCTCAGATTTCGACTTTTGGTGAGATACTTTCTTGGTTGTGCAAAAGGGACATGGTAGGCAAAGCACTTGAGTTGCTCAAGCTAATGGTTGGCAAGAACTTTTCCCCAGGTCCCAAGGCTTGGGAAATACTGCTCATGAGCTCTGGAAATGAACTAACTTCTGTTAAGAGTCTTGAAACTACTTTAGGAGATTTAGTAGGCATCGGAAGAAACTGA

Coding sequence (CDS)

ATGGCAAGCTTCAACGCTGTGAAGAGGAGCAACAACTTCCTCAGAAAACACAGGAAGTGGCCATTTTCACCTTACAAAACCAAATGGCATCAAACTTTCGATCAGGACGAAGCTTTACGAATCCTAAAACAAGCTACAAATTCGCCGGAACAACCCAATTCCGATGAACCCTACCTTCTTTCGGCCCTTGTAAGCTCCTTCAAAGCCTACTGCTGCGACCCAACCCCCAATGCTTACCATTTCGTCCTCAAAACCCTAGCTCGAACCTCCCAATTCCACCACATTCCCATTGTTCTTGATCGCCTCCAACGCGTCGAGAAATTCGAAACCCCAGAGTACATATTTGCCGACCTCATCAAGATTTACGGACAAATTGACAGAATTCAAGATGCTATCACTCTTTTTCGCAGGATTCCCATGTTTAGGTGCGTTCCATCTACGTTCTCGCTCAACTCTTTACTTTCTGTGCTCTGTAGAAATGGCGAAGGTCTTCGAATGGTTCCTGAAATAGTATTGGATAGCCAGACTATGGGTATTAGGCTTGAAGAGTCGACTTTCCGGATACTAATTACTGCTTTATGTAGAATTAATAAAGTTGGGCATGCTATGGAGATTTTCAGTTTTATGATAACTGAAGGCTATGGTCTTAATCCTGGAATATGTTCTTTGATTTTGTCATCGCTGTGCGAGCAAAAGAAATCCTCTGGTAACGAGGTTCTTAGTTTTCTGGAACAAATGAGGCAACAAGGATTCTGTCCCGTTGTTGTGGATTATTCTAATGTAATAAAGTTTTTCGTTAGAAGAGGGATGAGTTCATCTGCTGTTGATCTGTTGAATAAAATGAAGGCCGATGGTTTCAAGCCTGACATTGTTTGTTATACTATGGTCTTGAATGGGGTGATTGCGGAAGGGGATTATAAGATGGCAGACGAACTGTTTGATGAACTGCTTCTATTTGGTTTAGTTCCTGATGTTTATACATATAACGTGTACATATATGGATTATGCAAACAAGGTAACCCAGAAGCGGGAATTCAAATGATTTCGCATATGCAGGAATTGGGGTGCAAACCTGATGTGATTACTTATAATATTCTCTTGGAAACTTTGTGTAAAACCGGGAAGCTTGTTGAGGCGAGGAAGCTTAGAAGTGAGATGCAACTTAAGGGTCTGGCAGAAAACTTGCGGACTTTTAGGATTATGATCAATGGTTTATTTGATAACGGTGATGTAACTGAAGCTTGTGTTCTATTGGAGGAAATGCTAGGAAGTCGTTTCCCTCCTCAGATTTCGACTTTTGGTGAGATACTTTCTTGGTTGTGCAAAAGGGACATGGTAGGCAAAGCACTTGAGTTGCTCAAGCTAATGGTTGGCAAGAACTTTTCCCCAGGTCCCAAGGCTTGGGAAATACTGCTCATGAGCTCTGGAAATGAACTAACTTCTGTTAAGAGTCTTGAAACTACTTTAGGAGATTTAGTAGGCATCGGAAGAAACTGA

Protein sequence

MASFNAVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQATNSPEQPNSDEPYLLSALVSSFKAYCCDPTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYIFADLIKIYGQIDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIRLEESTFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVLSFLEQMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGVIAEGDYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDVITYNILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEEMLGSRFPPQISTFGEILSWLCKRDMVGKALELLKLMVGKNFSPGPKAWEILLMSSGNELTSVKSLETTLGDLVGIGRN

Homology

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BLAST of Lcy06g023780 vs. ExPASy Swiss-Prot
Match: Q8L6Y7 (Pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g38420 PE=2 SV=2)

HSP 1 Score: 396.7 bits (1018), Expect = 3.8e-109
Identity = 211/457 (46.17%), Postives = 301/457 (65.86%), Query Frame = 0


Query: 1   MASFNAVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQATNSPEQPNSDEPYLL 60
           MA  ++  R +NF+RK+RK P S +KTKW++   Q  A+  L+    S    +S+   ++
Sbjct: 1   MARSSSWHRMSNFMRKYRKIPHSSFKTKWNENLKQKYAMEELR----SNLLTDSENASVM 60

Query: 61  SALVSSFKAYCCDPTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYIFADLIK 120
             L+SSF+ + C+PTP AY FV+KTLA++SQ  +I  VL  L+  EKF+TPE IF D+I 
Sbjct: 61  RTLLSSFQLHNCEPTPQAYRFVIKTLAKSSQLENISSVLYHLEVSEKFDTPESIFRDVIA 120

Query: 121 IYGQIDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIR 180
            YG   RI++AI +F +IP FRCVPS ++LN+LL VL R  + L +VPEI++ +  MG+R
Sbjct: 121 AYGFSGRIEEAIEVFFKIPNFRCVPSAYTLNALLLVLVRKRQSLELVPEILVKACRMGVR 180

Query: 181 LEESTFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVL 240
           LEESTF ILI ALCRI +V  A E+  +M  +   ++P + S +LSS+C+ K SS  +V+
Sbjct: 181 LEESTFGILIDALCRIGEVDCATELVRYMSQDSVIVDPRLYSRLLSSVCKHKDSSCFDVI 240

Query: 241 SFLEQMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGV 300
            +LE +R+  F P + DY+ V++F V  G     V +LN+MK D  +PD+VCYT+VL GV
Sbjct: 241 GYLEDLRKTRFSPGLRDYTVVMRFLVEGGRGKEVVSVLNQMKCDRVEPDLVCYTIVLQGV 300

Query: 301 IAEGDYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDV 360
           IA+ DY  AD+LFDELLL GL PDVYTYNVYI GLCKQ + E  ++M+S M +LG +P+V
Sbjct: 301 IADEDYPKADKLFDELLLLGLAPDVYTYNVYINGLCKQNDIEGALKMMSSMNKLGSEPNV 360

Query: 361 ITYNILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEE 420
           +TYNIL++ L K G L  A+ L  EM+  G+  N  TF IMI+   +  +V  A  LLEE
Sbjct: 361 VTYNILIKALVKAGDLSRAKTLWKEMETNGVNRNSHTFDIMISAYIEVDEVVCAHGLLEE 420

Query: 421 MLGSRFPPQISTFGEILSWLCKRDMVGKALELLKLMV 458
                   + S   E++S LC++ ++ +A+ELL  +V
Sbjct: 421 AFNMNVFVKSSRIEEVISRLCEKGLMDQAVELLAHLV 453

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BLAST of Lcy06g023780 vs. ExPASy Swiss-Prot
Match: Q3EDF8 (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX=3702 GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.7e-43
Identity = 106/414 (25.60%), Postives = 199/414 (48.07%), Query Frame = 0


Query: 74  PTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYI-FADLIKIYGQIDRIQDAI 133
           P    Y+ ++    +  + ++   VLDR+       +P+ + +  +++      +++ A+
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMS-----VSPDVVTYNTILRSLCDSGKLKQAM 229

Query: 134 TLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIRLEESTFRILITA 193
            +  R+    C P   +   L+   CR+  G+    +++ + +  G   +  T+ +L+  
Sbjct: 230 EVLDRMLQRDCYPDVITYTILIEATCRD-SGVGHAMKLLDEMRDRGCTPDVVTYNVLVNG 289

Query: 194 LCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVLSFLEQMRQQGFC 253
           +C+  ++  A++  + M + G   N    ++IL S+C   +    E L  L  M ++GF 
Sbjct: 290 ICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKL--LADMLRKGFS 349

Query: 254 PVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGVIAEGDYKMADEL 313
           P VV ++ +I F  R+G+   A+D+L KM   G +P+ + Y  +L+G   E     A E 
Sbjct: 350 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 409

Query: 314 FDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDVITYNILLETLCK 373
            + ++  G  PD+ TYN  +  LCK G  E  +++++ +   GC P +ITYN +++ L K
Sbjct: 410 LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAK 469

Query: 374 TGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEEMLGSRFPPQIST 433
            GK  +A KL  EM+ K L  +  T+  ++ GL   G V EA     E       P   T
Sbjct: 470 AGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVT 529

Query: 434 FGEILSWLCKRDMVGKALELLKLMVGKNFSPGPKAWEILLMSSGNELTSVKSLE 487
           F  I+  LCK     +A++ L  M+ +   P   ++ IL+     E  + ++LE
Sbjct: 530 FNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALE 575

[Close]

BLAST of Lcy06g023780 vs. ExPASy Swiss-Prot
Match: Q9LFF1 (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 8.0e-43
Identity = 103/393 (26.21%), Postives = 191/393 (48.60%), Query Frame = 0


Query: 74  PTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYIFADLIKIYGQIDRIQDAIT 133
           P  + ++ ++K L R  Q     ++L+ +         E  F  +++ Y +   +  A+ 
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSY-GLVPDEKTFTTVMQGYIEEGDLDGALR 246

Query: 134 LFRRIPMFRCVPSTFSLNSLLSVLCRNG---EGLRMVPEIVLDSQTMGIRLEESTFRILI 193
           +  ++  F C  S  S+N ++   C+ G   + L  + E+   S   G   ++ TF  L+
Sbjct: 247 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM---SNQDGFFPDQYTFNTLV 306

Query: 194 TALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVLSFLEQMRQQG 253
             LC+   V HA+EI   M+ EGY  +    + ++S LC  K     E +  L+QM  + 
Sbjct: 307 NGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLC--KLGEVKEAVEVLDQMITRD 366

Query: 254 FCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGVIAEGDYKMAD 313
             P  V Y+ +I    +      A +L   + + G  PD+  +  ++ G+    ++++A 
Sbjct: 367 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 426

Query: 314 ELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDVITYNILLETL 373
           ELF+E+   G  PD +TYN+ I  LC +G  +  + M+  M+  GC   VITYN L++  
Sbjct: 427 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 486

Query: 374 CKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEEMLGSRFPPQI 433
           CK  K  EA ++  EM++ G++ N  T+  +I+GL  +  V +A  L+++M+     P  
Sbjct: 487 CKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDK 546

Query: 434 STFGEILSWLCKRDMVGKALELLKLMVGKNFSP 464
            T+  +L+  C+   + KA ++++ M      P
Sbjct: 547 YTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEP 573

[Close]

BLAST of Lcy06g023780 vs. ExPASy Swiss-Prot
Match: Q6NQ83 (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22470 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.4e-41
Identity = 105/389 (26.99%), Postives = 190/389 (48.84%), Query Frame = 0


Query: 108 FETPEYIFADLIKIYGQIDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNG---EGL 167
           +E     F+ L+  +    R+ +A+ L  R+   +  P   ++++L++ LC  G   E L
Sbjct: 136 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL 195

Query: 168 RMVPEIVLDSQTMGIRLEESTFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLI 227
            ++  +V      G + +E T+  ++  LC+      A+++F  M       +    S++
Sbjct: 196 VLIDRMV----EYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIV 255

Query: 228 LSSLCEQKKSSGNEVLSFLEQMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKAD 287
           + SLC  K  S ++ LS   +M  +G    VV YS++I      G       +L +M   
Sbjct: 256 IDSLC--KDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR 315

Query: 288 GFKPDIVCYTMVLNGVIAEGDYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAG 347
              PD+V ++ +++  + EG    A EL++E++  G+ PD  TYN  I G CK+      
Sbjct: 316 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEA 375

Query: 348 IQMISHMQELGCKPDVITYNILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMING 407
            QM   M   GC+PD++TY+IL+ + CK  ++ +  +L  E+  KGL  N  T+  ++ G
Sbjct: 376 NQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLG 435

Query: 408 LFDNGDVTEACVLLEEMLGSRFPPQISTFGEILSWLCKRDMVGKALELLKLMVGKNFSPG 467
              +G +  A  L +EM+    PP + T+G +L  LC    + KALE+ + M     + G
Sbjct: 436 FCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLG 495

Query: 468 PKAWEILL--MSSGNELTSVKSLETTLGD 492
              + I++  M + +++    SL  +L D
Sbjct: 496 IGIYNIIIHGMCNASKVDDAWSLFCSLSD 518

[Close]

BLAST of Lcy06g023780 vs. ExPASy Swiss-Prot
Match: Q9CAM8 (Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX=3702 GN=At1g63150 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.7e-40
Identity = 98/348 (28.16%), Postives = 177/348 (50.86%), Query Frame = 0


Query: 125 IDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIRLEES 184
           I ++ DA+ LF  +   R  PS    N LLS + +  +   +V  +    QT+GI  +  
Sbjct: 61  IIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNK-FELVISLGEQMQTLGISHDLY 120

Query: 185 TFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVLSFLE 244
           T+ I I   CR +++  A+ + + M+  GY  +    S +L+  C  K+ S  + ++ ++
Sbjct: 121 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRIS--DAVALVD 180

Query: 245 QMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGVIAEG 304
           QM + G+ P    ++ +I        +S AV L+++M   G +PD+V Y  V+NG+   G
Sbjct: 181 QMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRG 240

Query: 305 DYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDVITYN 364
           D  +A  L +++    +  +V  +N  I  LCK  + E  + + + M+  G +P+V+TYN
Sbjct: 241 DIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYN 300

Query: 365 ILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEEMLGS 424
            L+  LC  G+  +A +L S M  K +  N+ TF  +I+  F  G + EA  L EEM+  
Sbjct: 301 SLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQR 360

Query: 425 RFPPQISTFGEILSWLCKRDMVGKALELLKLMVGKNFSPGPKAWEILL 473
              P   T+  +++  C  + + +A ++ K MV K+  P  + +  L+
Sbjct: 361 SIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLI 405

[Close]

BLAST of Lcy06g023780 vs. ExPASy TrEMBL
Match: A0A6J1DU83 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024060 PE=4 SV=1)

HSP 1 Score: 890.6 bits (2300), Expect = 3.1e-255
Identity = 433/495 (87.47%), Postives = 467/495 (94.34%), Query Frame = 0


Query: 1   MASFNAVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQATNSPEQPNSDEPYLL 60
           MASF+ VKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQA NSPEQ NSD+PYLL
Sbjct: 1   MASFSVVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQAANSPEQSNSDQPYLL 60

Query: 61  SALVSSFKAYCCDPTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYIFADLIK 120
           SALVSSFKAYCC PTPNAYHFVLKTLARTSQFHHIP+VLDRL+RVEKFETPEYIFADLIK
Sbjct: 61  SALVSSFKAYCCHPTPNAYHFVLKTLARTSQFHHIPLVLDRLERVEKFETPEYIFADLIK 120

Query: 121 IYGQIDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIR 180
            YG+++RIQDAIT+FRRIPMFRCVPST SLN LL +LC+NGEG+RMVPEI+L+SQ MGIR
Sbjct: 121 FYGRMNRIQDAITIFRRIPMFRCVPSTLSLNPLLFLLCKNGEGIRMVPEIILNSQAMGIR 180

Query: 181 LEESTFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVL 240
           LEESTFRILITALC+IN+VGHAMEIF+ MITEGYGLNPGICS ILSSLCEQK+SS +EVL
Sbjct: 181 LEESTFRILITALCKINRVGHAMEIFNNMITEGYGLNPGICSFILSSLCEQKRSSSSEVL 240

Query: 241 SFLEQMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGV 300
           SFLEQMRQ+GFCP VVDYSN+IKFFVRRGMSS A+DLLNKMKADGFKPDIV YTMVLNGV
Sbjct: 241 SFLEQMRQKGFCPCVVDYSNIIKFFVRRGMSSDALDLLNKMKADGFKPDIVSYTMVLNGV 300

Query: 301 IAEGDYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDV 360
           I +GDYKMADELFDELLLFGL+PD+YTYNVYI+GLCKQG+P AGIQMIS M+ELGCKP+V
Sbjct: 301 IGDGDYKMADELFDELLLFGLIPDIYTYNVYIHGLCKQGDPGAGIQMISRMEELGCKPNV 360

Query: 361 ITYNILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEE 420
           ITYNILLET CKT KL EARKLRSEMQLKGLAENL TFRIMINGLF+NG+V EAC++LEE
Sbjct: 361 ITYNILLETFCKTRKLDEARKLRSEMQLKGLAENLLTFRIMINGLFNNGEVIEACIILEE 420

Query: 421 MLGSRFPPQISTFGEILSWLCKRDMVGKALELLKLMVGKNFSPGPKAWEILLMSSGNELT 480
           MLG  FPPQISTFGEILSWLCKR MVGKALELL LMVGKNFSPG KAWEILL+SSGNELT
Sbjct: 421 MLGGCFPPQISTFGEILSWLCKRGMVGKALELLTLMVGKNFSPGAKAWEILLLSSGNELT 480

Query: 481 SVKSLETTLGDLVGI 496
           SVKSLETTLGDLVG+
Sbjct: 481 SVKSLETTLGDLVGV 495

[Close]

BLAST of Lcy06g023780 vs. ExPASy TrEMBL
Match: A0A6J1IZC4 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111482051 PE=4 SV=1)

HSP 1 Score: 854.7 bits (2207), Expect = 1.9e-244
Identity = 416/495 (84.04%), Postives = 455/495 (91.92%), Query Frame = 0


Query: 1   MASFNAVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQATNSPEQPNSDEPYLL 60
           M S   VKRS++FLRKHRKWPFSP+KTKWHQTF+QDEALR +KQA NSP+QPNSDEPYLL
Sbjct: 1   MESIRVVKRSDHFLRKHRKWPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLL 60

Query: 61  SALVSSFKAYCCDPTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYIFADLIK 120
           S L+SSF+AYCCDPTPNAYHFVLKTLAR+SQFH+I  VLDRL+RVEKFETPE IF DL+K
Sbjct: 61  SVLISSFRAYCCDPTPNAYHFVLKTLARSSQFHYIAAVLDRLERVEKFETPESIFVDLLK 120

Query: 121 IYGQIDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIR 180
           +YG+++RIQDAITLFRRIPMFRCVPS  SLNSLL +LCRNGEGLR+VPEI+L SQTMGIR
Sbjct: 121 VYGRVNRIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIR 180

Query: 181 LEESTFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVL 240
           LEESTFRILITALC+I KVGHAME+F++MITEGYGLNPGICSLIL+SLCE KKS+GN VL
Sbjct: 181 LEESTFRILITALCKIYKVGHAMELFNYMITEGYGLNPGICSLILASLCEHKKSTGNVVL 240

Query: 241 SFLEQMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGV 300
            FLEQMR +GFCP+VVDYSNVIKF VRRG+SS A+DLLNKMKADGFKPDIVCYTMVLNGV
Sbjct: 241 IFLEQMRLKGFCPLVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGV 300

Query: 301 IAEGDYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDV 360
           IA+GDYKMADELFDELLLFGLVPD+YTYNVYI+GLCKQGN EAGIQMI HM+ELGCKPDV
Sbjct: 301 IADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILHMEELGCKPDV 360

Query: 361 ITYNILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEE 420
           ITYNILLE LCK G+L EARKLR  MQLKGLA N+RTFRIMI+GLF NGDV EAC+LLEE
Sbjct: 361 ITYNILLECLCKIGELDEARKLRGNMQLKGLANNVRTFRIMISGLFHNGDVIEACILLEE 420

Query: 421 MLGSRFPPQISTFGEILSWLCKRDMVGKALELLKLMVGKNFSPGPKAWEILLMSSGNELT 480
           ML SRFPPQISTFGEILSWLCKRDMVGKALELL LMVG NFSPGPKAWE LL+SS +ELT
Sbjct: 421 MLVSRFPPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELT 480

Query: 481 SVKSLETTLGDLVGI 496
            VKSLETTL DL GI
Sbjct: 481 PVKSLETTLEDLGGI 495

[Close]

BLAST of Lcy06g023780 vs. ExPASy TrEMBL
Match: A0A6J1F5E3 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111442310 PE=4 SV=1)

HSP 1 Score: 845.5 bits (2183), Expect = 1.1e-241
Identity = 413/495 (83.43%), Postives = 454/495 (91.72%), Query Frame = 0


Query: 1   MASFNAVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQATNSPEQPNSDEPYLL 60
           M S   VKRS++FLRKHRK PFSP+KTKWHQTF+QDEALR +KQA NSP+QPNSDEPYLL
Sbjct: 1   MESIRVVKRSDHFLRKHRKCPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLL 60

Query: 61  SALVSSFKAYCCDPTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYIFADLIK 120
           S L+SSF+AYCCDPTPNAYHFVLKT  R+SQFH+I  VLDRL+RVEKFETPEYIF DL+K
Sbjct: 61  SVLISSFRAYCCDPTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLK 120

Query: 121 IYGQIDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIR 180
           +YG+++RIQDAITLFRRIPMFRCVPS  SLNSLL +LCRNGEGLR+VPEI+L SQTMGIR
Sbjct: 121 VYGRVNRIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIR 180

Query: 181 LEESTFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVL 240
           LEESTFRILITALC+I KVGHAME+F++MITEGYGLNPGI SLIL+SLCE KKS+GN VL
Sbjct: 181 LEESTFRILITALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVL 240

Query: 241 SFLEQMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGV 300
           +FLEQMR +GFCP VVDYSNVIKF VRRG+SS A+DLLNKMKADGFKPDIVCYTMVLNGV
Sbjct: 241 TFLEQMRLKGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGV 300

Query: 301 IAEGDYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDV 360
           IA+GDYKMADELFDELLLFGLVPD+YTYNVYI+GLCKQGN EAGIQMI  M+ELGCKPDV
Sbjct: 301 IADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDV 360

Query: 361 ITYNILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEE 420
           ITYNILLE LCK G+L EARKLR  MQLKGLA+N+RTF IMI+GLF+NGDV EAC+LLEE
Sbjct: 361 ITYNILLECLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEE 420

Query: 421 MLGSRFPPQISTFGEILSWLCKRDMVGKALELLKLMVGKNFSPGPKAWEILLMSSGNELT 480
           ML SRFPPQISTFGEILSWLCKRDMVGKALELL LMVG NFSPGPKAWE LL+SS +ELT
Sbjct: 421 MLVSRFPPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELT 480

Query: 481 SVKSLETTLGDLVGI 496
           SVKSLETTL DLVGI
Sbjct: 481 SVKSLETTLEDLVGI 495

[Close]

BLAST of Lcy06g023780 vs. ExPASy TrEMBL
Match: A0A0A0LA35 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730720 PE=4 SV=1)

HSP 1 Score: 812.0 bits (2096), Expect = 1.4e-231
Identity = 398/495 (80.40%), Postives = 450/495 (90.91%), Query Frame = 0


Query: 1   MASFNAVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQATNSPEQPNSDEPYLL 60
           + SF+ VK+SNNFLRKHRKWP S +KTKWHQTFDQDEALRILKQA N P+QP+     LL
Sbjct: 2   VGSFSVVKKSNNFLRKHRKWPLSSHKTKWHQTFDQDEALRILKQAAN-PDQPH----LLL 61

Query: 61  SALVSSFKAYCCDPTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYIFADLIK 120
           SALV+SF AY C PTPNAY+FVLKTLARTSQFHHIP VL RLQ +E F+TPEYIF DLIK
Sbjct: 62  SALVTSFTAYSCHPTPNAYYFVLKTLARTSQFHHIPPVLHRLQFLENFQTPEYIFVDLIK 121

Query: 121 IYGQIDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIR 180
           +YG+++RIQDA+TLFRRIPMFRCVPST SLNSLLS L RN +GL ++P+I+L+S +MGIR
Sbjct: 122 LYGRMNRIQDAVTLFRRIPMFRCVPSTLSLNSLLSQLSRNAQGLPIIPDIILNSHSMGIR 181

Query: 181 LEESTFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVL 240
           LE STF+ILITALC++NKVGHAME+F++MITEGYGLNP ICSLIL+SLC+QKKSSG+ VL
Sbjct: 182 LEHSTFQILITALCKVNKVGHAMELFNYMITEGYGLNPQICSLILASLCQQKKSSGDVVL 241

Query: 241 SFLEQMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGV 300
            FLE+MRQ+GFCP VVDYSNVIKFFV RGM S AVDLLNKMKADGFKPDIVCYTMVLNGV
Sbjct: 242 GFLEEMRQKGFCPAVVDYSNVIKFFVTRGMGSDAVDLLNKMKADGFKPDIVCYTMVLNGV 301

Query: 301 IAEGDYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDV 360
           IA+GDYKMADELFDELLLFGLVPD+YTYNVYI+GLCKQG+  AG+QMI HM+ LGC+P+V
Sbjct: 302 IADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGDSVAGLQMIPHMEALGCQPNV 361

Query: 361 ITYNILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEE 420
           ITYN++L++LCKTG+L EARKLRS+MQLKGLAENLRTFRIMI+GLF NG+V EACVLLEE
Sbjct: 362 ITYNVILKSLCKTGELDEARKLRSKMQLKGLAENLRTFRIMIDGLFHNGEVIEACVLLEE 421

Query: 421 MLGSRFPPQISTFGEILSWLCKRDMVGKALELLKLMVGKNFSPGPKAWEILLMSSGNELT 480
           MLGSRFPPQISTF EILSWLCKR MVGKA+ELL LMVGKNFSPGPKAWEILL+SS +ELT
Sbjct: 422 MLGSRFPPQISTFSEILSWLCKRHMVGKAVELLALMVGKNFSPGPKAWEILLLSSESELT 481

Query: 481 SVKSLETTLGDLVGI 496
           SVKSLETTL DLVGI
Sbjct: 482 SVKSLETTLKDLVGI 491

[Close]

BLAST of Lcy06g023780 vs. ExPASy TrEMBL
Match: A0A5A7TL23 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005720 PE=4 SV=1)

HSP 1 Score: 804.3 bits (2076), Expect = 2.9e-229
Identity = 400/495 (80.81%), Postives = 445/495 (89.90%), Query Frame = 0


Query: 1   MASFNAVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQATNSPEQPNSDEPYLL 60
           M SF+ VK SNNFLRKHRKWPFS +KT WHQTFDQDEALRILKQ+ NS  QP+     LL
Sbjct: 1   MGSFSVVKNSNNFLRKHRKWPFSSHKTTWHQTFDQDEALRILKQSANS-HQPH----LLL 60

Query: 61  SALVSSFKAYCCDPTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYIFADLIK 120
           S L++SF +Y C PTPNAY+FVLKTLARTSQFHHIP VL RLQ VEKF+TPEYIF DLIK
Sbjct: 61  STLITSFTSYSCHPTPNAYYFVLKTLARTSQFHHIPPVLHRLQFVEKFQTPEYIFVDLIK 120

Query: 121 IYGQIDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIR 180
           +YG+++RIQDA+TLFRRIPMFRC PST SLNSLLS+L RN +GL M+P+I+L+S +MGIR
Sbjct: 121 LYGRMNRIQDAVTLFRRIPMFRCFPSTLSLNSLLSLLSRNTQGLPMIPDILLNSHSMGIR 180

Query: 181 LEESTFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVL 240
           LE STFRILITALC++NKVGHAMEIF++MITEGYGLNP ICSLIL SLC+QK SSG+ VL
Sbjct: 181 LEHSTFRILITALCKVNKVGHAMEIFNYMITEGYGLNPQICSLILGSLCQQKNSSGDVVL 240

Query: 241 SFLEQMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGV 300
           SFLE+ RQ+GFCP VVDYSNVIKFFV RGMSS A+DLLNKMKADGFKPDIVCYTMVLNGV
Sbjct: 241 SFLEETRQKGFCPAVVDYSNVIKFFVTRGMSSDAIDLLNKMKADGFKPDIVCYTMVLNGV 300

Query: 301 IAEGDYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDV 360
           IA+GDY+MADELFDELLLFGLVPD+YTYNVYI+GLCKQGN  AG+QMISHM+ LGCKP+V
Sbjct: 301 IADGDYQMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNSAAGLQMISHMEALGCKPNV 360

Query: 361 ITYNILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEE 420
           ITYNILL++LC TG+L EARKLRS+MQLKGLAENLRTFRIMI+GLF NG+V EACVLLEE
Sbjct: 361 ITYNILLKSLCITGELDEARKLRSKMQLKGLAENLRTFRIMIDGLFHNGEVIEACVLLEE 420

Query: 421 MLGSRFPPQISTFGEILSWLCKRDMVGKALELLKLMVGKNFSPGPKAWEILLMSSGNELT 480
           ML SRFPPQISTF EILS LCKR MVGKALELL LMVGKNFSPGPKAWEILL+SS +ELT
Sbjct: 421 MLRSRFPPQISTFSEILSRLCKRHMVGKALELLTLMVGKNFSPGPKAWEILLLSSESELT 480

Query: 481 SVKSLETTLGDLVGI 496
           SVKSLETTL DLVGI
Sbjct: 481 SVKSLETTLKDLVGI 490

[Close]

BLAST of Lcy06g023780 vs. NCBI nr
Match: XP_022157332.1 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial isoform X1 [Momordica charantia] >XP_022157333.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial isoform X1 [Momordica charantia])

HSP 1 Score: 890.6 bits (2300), Expect = 6.3e-255
Identity = 433/495 (87.47%), Postives = 467/495 (94.34%), Query Frame = 0


Query: 1   MASFNAVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQATNSPEQPNSDEPYLL 60
           MASF+ VKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQA NSPEQ NSD+PYLL
Sbjct: 1   MASFSVVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQAANSPEQSNSDQPYLL 60

Query: 61  SALVSSFKAYCCDPTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYIFADLIK 120
           SALVSSFKAYCC PTPNAYHFVLKTLARTSQFHHIP+VLDRL+RVEKFETPEYIFADLIK
Sbjct: 61  SALVSSFKAYCCHPTPNAYHFVLKTLARTSQFHHIPLVLDRLERVEKFETPEYIFADLIK 120

Query: 121 IYGQIDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIR 180
            YG+++RIQDAIT+FRRIPMFRCVPST SLN LL +LC+NGEG+RMVPEI+L+SQ MGIR
Sbjct: 121 FYGRMNRIQDAITIFRRIPMFRCVPSTLSLNPLLFLLCKNGEGIRMVPEIILNSQAMGIR 180

Query: 181 LEESTFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVL 240
           LEESTFRILITALC+IN+VGHAMEIF+ MITEGYGLNPGICS ILSSLCEQK+SS +EVL
Sbjct: 181 LEESTFRILITALCKINRVGHAMEIFNNMITEGYGLNPGICSFILSSLCEQKRSSSSEVL 240

Query: 241 SFLEQMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGV 300
           SFLEQMRQ+GFCP VVDYSN+IKFFVRRGMSS A+DLLNKMKADGFKPDIV YTMVLNGV
Sbjct: 241 SFLEQMRQKGFCPCVVDYSNIIKFFVRRGMSSDALDLLNKMKADGFKPDIVSYTMVLNGV 300

Query: 301 IAEGDYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDV 360
           I +GDYKMADELFDELLLFGL+PD+YTYNVYI+GLCKQG+P AGIQMIS M+ELGCKP+V
Sbjct: 301 IGDGDYKMADELFDELLLFGLIPDIYTYNVYIHGLCKQGDPGAGIQMISRMEELGCKPNV 360

Query: 361 ITYNILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEE 420
           ITYNILLET CKT KL EARKLRSEMQLKGLAENL TFRIMINGLF+NG+V EAC++LEE
Sbjct: 361 ITYNILLETFCKTRKLDEARKLRSEMQLKGLAENLLTFRIMINGLFNNGEVIEACIILEE 420

Query: 421 MLGSRFPPQISTFGEILSWLCKRDMVGKALELLKLMVGKNFSPGPKAWEILLMSSGNELT 480
           MLG  FPPQISTFGEILSWLCKR MVGKALELL LMVGKNFSPG KAWEILL+SSGNELT
Sbjct: 421 MLGGCFPPQISTFGEILSWLCKRGMVGKALELLTLMVGKNFSPGAKAWEILLLSSGNELT 480

Query: 481 SVKSLETTLGDLVGI 496
           SVKSLETTLGDLVG+
Sbjct: 481 SVKSLETTLGDLVGV 495

[Close]

BLAST of Lcy06g023780 vs. NCBI nr
Match: XP_038903517.1 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903518.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903520.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903521.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903522.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903523.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903524.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903525.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903526.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903527.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903528.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903529.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903530.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903531.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida])

HSP 1 Score: 878.2 bits (2268), Expect = 3.3e-251
Identity = 428/495 (86.46%), Postives = 469/495 (94.75%), Query Frame = 0


Query: 1   MASFNAVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQATNSPEQPNSDEPYLL 60
           MASF+ VK+SNNFLRKHRKWPF PYKTKWH+TFDQDEALRILKQA NSP+ PNSDEP LL
Sbjct: 1   MASFSVVKKSNNFLRKHRKWPFPPYKTKWHRTFDQDEALRILKQAANSPKPPNSDEPSLL 60

Query: 61  SALVSSFKAYCCDPTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYIFADLIK 120
           SAL++SF+AY C PTPNAYHFVLKTLARTSQFHHI  VLDRL+RVEKF+TPEYIF DLIK
Sbjct: 61  SALITSFRAYRCHPTPNAYHFVLKTLARTSQFHHIAPVLDRLERVEKFQTPEYIFVDLIK 120

Query: 121 IYGQIDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIR 180
           +YG++DRIQDA+TLFRRIPMFRCVPST SLNSLL +LCRNGEGLR++PEI+L+SQTMGIR
Sbjct: 121 VYGRMDRIQDAVTLFRRIPMFRCVPSTLSLNSLLFLLCRNGEGLRIIPEIILNSQTMGIR 180

Query: 181 LEESTFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVL 240
           LE+STFRILITALC+INKVGHAMEIF++MITEGYGLNP ICSLIL+S+CEQK+SS + VL
Sbjct: 181 LEDSTFRILITALCKINKVGHAMEIFNYMITEGYGLNPRICSLILASMCEQKRSSSDVVL 240

Query: 241 SFLEQMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGV 300
           SFLE+MRQ+GFCPVVVDYSNVIKFFV RGMSS AVDLLNKMKADGFKPDIVCYTMVLNGV
Sbjct: 241 SFLEEMRQKGFCPVVVDYSNVIKFFVTRGMSSDAVDLLNKMKADGFKPDIVCYTMVLNGV 300

Query: 301 IAEGDYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDV 360
           IA+GDYKMADELFDELLLFGLVPD+YTYNVYI+GLCKQGN EAGIQMI HM+ELGCKP+V
Sbjct: 301 IADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNLEAGIQMILHMEELGCKPNV 360

Query: 361 ITYNILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEE 420
           ITYNILLE+LCKTG+L EARKLRS+MQLKGLAENLRTFRIMI+GLF NGDV EACVLLEE
Sbjct: 361 ITYNILLESLCKTGELDEARKLRSKMQLKGLAENLRTFRIMIDGLFHNGDVIEACVLLEE 420

Query: 421 MLGSRFPPQISTFGEILSWLCKRDMVGKALELLKLMVGKNFSPGPKAWEILLMSSGNELT 480
           M+GS FPPQISTFGEILSWLCKRDMVGKALELL LMVGKNFSPGPKAWEILL+SS +ELT
Sbjct: 421 MVGSCFPPQISTFGEILSWLCKRDMVGKALELLTLMVGKNFSPGPKAWEILLLSSESELT 480

Query: 481 SVKSLETTLGDLVGI 496
           SV+SLETTL DLVGI
Sbjct: 481 SVQSLETTLEDLVGI 495

[Close]

BLAST of Lcy06g023780 vs. NCBI nr
Match: XP_022983450.1 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita maxima] >XP_022983451.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita maxima] >XP_022983452.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita maxima] >XP_022983453.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita maxima] >XP_022983454.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita maxima])

HSP 1 Score: 854.7 bits (2207), Expect = 3.8e-244
Identity = 416/495 (84.04%), Postives = 455/495 (91.92%), Query Frame = 0


Query: 1   MASFNAVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQATNSPEQPNSDEPYLL 60
           M S   VKRS++FLRKHRKWPFSP+KTKWHQTF+QDEALR +KQA NSP+QPNSDEPYLL
Sbjct: 1   MESIRVVKRSDHFLRKHRKWPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLL 60

Query: 61  SALVSSFKAYCCDPTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYIFADLIK 120
           S L+SSF+AYCCDPTPNAYHFVLKTLAR+SQFH+I  VLDRL+RVEKFETPE IF DL+K
Sbjct: 61  SVLISSFRAYCCDPTPNAYHFVLKTLARSSQFHYIAAVLDRLERVEKFETPESIFVDLLK 120

Query: 121 IYGQIDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIR 180
           +YG+++RIQDAITLFRRIPMFRCVPS  SLNSLL +LCRNGEGLR+VPEI+L SQTMGIR
Sbjct: 121 VYGRVNRIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIR 180

Query: 181 LEESTFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVL 240
           LEESTFRILITALC+I KVGHAME+F++MITEGYGLNPGICSLIL+SLCE KKS+GN VL
Sbjct: 181 LEESTFRILITALCKIYKVGHAMELFNYMITEGYGLNPGICSLILASLCEHKKSTGNVVL 240

Query: 241 SFLEQMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGV 300
            FLEQMR +GFCP+VVDYSNVIKF VRRG+SS A+DLLNKMKADGFKPDIVCYTMVLNGV
Sbjct: 241 IFLEQMRLKGFCPLVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGV 300

Query: 301 IAEGDYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDV 360
           IA+GDYKMADELFDELLLFGLVPD+YTYNVYI+GLCKQGN EAGIQMI HM+ELGCKPDV
Sbjct: 301 IADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILHMEELGCKPDV 360

Query: 361 ITYNILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEE 420
           ITYNILLE LCK G+L EARKLR  MQLKGLA N+RTFRIMI+GLF NGDV EAC+LLEE
Sbjct: 361 ITYNILLECLCKIGELDEARKLRGNMQLKGLANNVRTFRIMISGLFHNGDVIEACILLEE 420

Query: 421 MLGSRFPPQISTFGEILSWLCKRDMVGKALELLKLMVGKNFSPGPKAWEILLMSSGNELT 480
           ML SRFPPQISTFGEILSWLCKRDMVGKALELL LMVG NFSPGPKAWE LL+SS +ELT
Sbjct: 421 MLVSRFPPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELT 480

Query: 481 SVKSLETTLGDLVGI 496
            VKSLETTL DL GI
Sbjct: 481 PVKSLETTLEDLGGI 495

[Close]

BLAST of Lcy06g023780 vs. NCBI nr
Match: XP_023527573.1 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023527574.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023527575.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023527576.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023527577.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023527578.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023527580.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023527581.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023527582.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 851.3 bits (2198), Expect = 4.3e-243
Identity = 414/495 (83.64%), Postives = 455/495 (91.92%), Query Frame = 0


Query: 1   MASFNAVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQATNSPEQPNSDEPYLL 60
           M S   VKRS++FLRKHRK PFSP+KTKWHQTF+QDEALR +KQA NSP+QPNSDEPYLL
Sbjct: 1   MESIRVVKRSDHFLRKHRKCPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLL 60

Query: 61  SALVSSFKAYCCDPTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYIFADLIK 120
           S L+SSF+AYCCDPTPNAYHFVLKT  R+SQFH+I  VLDRL+RVEKFETPEYIF DL+K
Sbjct: 61  SVLISSFRAYCCDPTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLK 120

Query: 121 IYGQIDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIR 180
           +YG+++RIQDAITLFRRIPMFRCVPS  SLNSLL +LCRNGEGLR+VPEI+L SQTMGIR
Sbjct: 121 VYGRVNRIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIR 180

Query: 181 LEESTFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVL 240
           LEESTFRILITALC+I KVGHAME+F++MITEGYGLNPGICSLIL+SLCE KKS+GN VL
Sbjct: 181 LEESTFRILITALCKIYKVGHAMELFNYMITEGYGLNPGICSLILASLCEHKKSTGNVVL 240

Query: 241 SFLEQMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGV 300
           +FLEQMR +GFCP VVDYSNVIKF VRRG+SS A+DLLNKMKADGFKPDIVCYTMVLNGV
Sbjct: 241 TFLEQMRLKGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGV 300

Query: 301 IAEGDYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDV 360
           IA+GDYKMADELFDELLLFGLVPD+YTYNVYI+GLCKQGN EAGIQMI HM+ELGCKPDV
Sbjct: 301 IADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILHMEELGCKPDV 360

Query: 361 ITYNILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEE 420
           ITYNILLE LCK G+L EARKLR  MQLKGLA+N+RTFRIMI+GLF+NGDV EAC+LLEE
Sbjct: 361 ITYNILLECLCKIGELDEARKLRGNMQLKGLAKNVRTFRIMISGLFNNGDVIEACILLEE 420

Query: 421 MLGSRFPPQISTFGEILSWLCKRDMVGKALELLKLMVGKNFSPGPKAWEILLMSSGNELT 480
           ML  RFPPQISTFGEILSWLCKRDMVGKALELL LMVG NFSPGPKAWE LL+SS +EL 
Sbjct: 421 MLVCRFPPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELP 480

Query: 481 SVKSLETTLGDLVGI 496
           SVKSLETTL DLVGI
Sbjct: 481 SVKSLETTLEDLVGI 495

[Close]

BLAST of Lcy06g023780 vs. NCBI nr
Match: KAG7017195.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 848.2 bits (2190), Expect = 3.6e-242
Identity = 413/495 (83.43%), Postives = 455/495 (91.92%), Query Frame = 0


Query: 1   MASFNAVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQATNSPEQPNSDEPYLL 60
           M S   VKRS++FLRKHRK PFSP+KTKWHQTF+QDEALR +KQA NSP+QPNSDEPYLL
Sbjct: 1   MESIRVVKRSDHFLRKHRKCPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLL 60

Query: 61  SALVSSFKAYCCDPTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYIFADLIK 120
           S L+SSF+AYCCDPTPNAYHFVLKT  R+SQFH+I  VLDRL+RVEKFETPEYIF DL+K
Sbjct: 61  SVLISSFRAYCCDPTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLK 120

Query: 121 IYGQIDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIR 180
           +YG+++RIQDAITLFRRIPMFRCVPS  SLNSLL +LCRNGEGLR+VPEI+L SQTMGIR
Sbjct: 121 VYGRVNRIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIR 180

Query: 181 LEESTFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVL 240
           LEESTFRILITALC+I KVGHAME+F++MITEGYGLNPGICSLIL+SLCE KKS+GN VL
Sbjct: 181 LEESTFRILITALCKIYKVGHAMELFNYMITEGYGLNPGICSLILASLCEHKKSTGNVVL 240

Query: 241 SFLEQMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGV 300
           +FLEQMR +GFCP VVDYSNVIKF VRRG+SS A+DLLNKMKADGFKPDIVCYTMVLNGV
Sbjct: 241 TFLEQMRLKGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGV 300

Query: 301 IAEGDYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDV 360
           IA+GDYKMADELFDELLLFGLVPD+YTYNVYI+GLCKQGN EAGIQMI  M+ELGCKPDV
Sbjct: 301 IADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDV 360

Query: 361 ITYNILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEE 420
           ITYNILLE LCK G+L EARKLR  MQLKGLA+N+RTF IMI+GLF+NGDV EAC+LLEE
Sbjct: 361 ITYNILLECLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEE 420

Query: 421 MLGSRFPPQISTFGEILSWLCKRDMVGKALELLKLMVGKNFSPGPKAWEILLMSSGNELT 480
           ML SRFPPQISTFG+ILSWLCKRDMVGKALELL LMVG NFSPGPKAWE LL+SS +ELT
Sbjct: 421 MLVSRFPPQISTFGQILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELT 480

Query: 481 SVKSLETTLGDLVGI 496
           SVKSLETTL DLVGI
Sbjct: 481 SVKSLETTLEDLVGI 495

[Close]

BLAST of Lcy06g023780 vs. TAIR 10
Match: AT2G38420.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 396.7 bits (1018), Expect = 2.7e-110
Identity = 211/457 (46.17%), Postives = 301/457 (65.86%), Query Frame = 0


Query: 1   MASFNAVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQATNSPEQPNSDEPYLL 60
           MA  ++  R +NF+RK+RK P S +KTKW++   Q  A+  L+    S    +S+   ++
Sbjct: 1   MARSSSWHRMSNFMRKYRKIPHSSFKTKWNENLKQKYAMEELR----SNLLTDSENASVM 60

Query: 61  SALVSSFKAYCCDPTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYIFADLIK 120
             L+SSF+ + C+PTP AY FV+KTLA++SQ  +I  VL  L+  EKF+TPE IF D+I 
Sbjct: 61  RTLLSSFQLHNCEPTPQAYRFVIKTLAKSSQLENISSVLYHLEVSEKFDTPESIFRDVIA 120

Query: 121 IYGQIDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIR 180
            YG   RI++AI +F +IP FRCVPS ++LN+LL VL R  + L +VPEI++ +  MG+R
Sbjct: 121 AYGFSGRIEEAIEVFFKIPNFRCVPSAYTLNALLLVLVRKRQSLELVPEILVKACRMGVR 180

Query: 181 LEESTFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVL 240
           LEESTF ILI ALCRI +V  A E+  +M  +   ++P + S +LSS+C+ K SS  +V+
Sbjct: 181 LEESTFGILIDALCRIGEVDCATELVRYMSQDSVIVDPRLYSRLLSSVCKHKDSSCFDVI 240

Query: 241 SFLEQMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGV 300
            +LE +R+  F P + DY+ V++F V  G     V +LN+MK D  +PD+VCYT+VL GV
Sbjct: 241 GYLEDLRKTRFSPGLRDYTVVMRFLVEGGRGKEVVSVLNQMKCDRVEPDLVCYTIVLQGV 300

Query: 301 IAEGDYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDV 360
           IA+ DY  AD+LFDELLL GL PDVYTYNVYI GLCKQ + E  ++M+S M +LG +P+V
Sbjct: 301 IADEDYPKADKLFDELLLLGLAPDVYTYNVYINGLCKQNDIEGALKMMSSMNKLGSEPNV 360

Query: 361 ITYNILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEE 420
           +TYNIL++ L K G L  A+ L  EM+  G+  N  TF IMI+   +  +V  A  LLEE
Sbjct: 361 VTYNILIKALVKAGDLSRAKTLWKEMETNGVNRNSHTFDIMISAYIEVDEVVCAHGLLEE 420

Query: 421 MLGSRFPPQISTFGEILSWLCKRDMVGKALELLKLMV 458
                   + S   E++S LC++ ++ +A+ELL  +V
Sbjct: 421 AFNMNVFVKSSRIEEVISRLCEKGLMDQAVELLAHLV 453

[Close]

BLAST of Lcy06g023780 vs. TAIR 10
Match: AT1G09900.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 177.2 bits (448), Expect = 3.3e-44
Identity = 106/414 (25.60%), Postives = 199/414 (48.07%), Query Frame = 0


Query: 74  PTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYI-FADLIKIYGQIDRIQDAI 133
           P    Y+ ++    +  + ++   VLDR+       +P+ + +  +++      +++ A+
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMS-----VSPDVVTYNTILRSLCDSGKLKQAM 229

Query: 134 TLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIRLEESTFRILITA 193
            +  R+    C P   +   L+   CR+  G+    +++ + +  G   +  T+ +L+  
Sbjct: 230 EVLDRMLQRDCYPDVITYTILIEATCRD-SGVGHAMKLLDEMRDRGCTPDVVTYNVLVNG 289

Query: 194 LCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVLSFLEQMRQQGFC 253
           +C+  ++  A++  + M + G   N    ++IL S+C   +    E L  L  M ++GF 
Sbjct: 290 ICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKL--LADMLRKGFS 349

Query: 254 PVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGVIAEGDYKMADEL 313
           P VV ++ +I F  R+G+   A+D+L KM   G +P+ + Y  +L+G   E     A E 
Sbjct: 350 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 409

Query: 314 FDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDVITYNILLETLCK 373
            + ++  G  PD+ TYN  +  LCK G  E  +++++ +   GC P +ITYN +++ L K
Sbjct: 410 LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAK 469

Query: 374 TGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEEMLGSRFPPQIST 433
            GK  +A KL  EM+ K L  +  T+  ++ GL   G V EA     E       P   T
Sbjct: 470 AGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVT 529

Query: 434 FGEILSWLCKRDMVGKALELLKLMVGKNFSPGPKAWEILLMSSGNELTSVKSLE 487
           F  I+  LCK     +A++ L  M+ +   P   ++ IL+     E  + ++LE
Sbjct: 530 FNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALE 575

[Close]

BLAST of Lcy06g023780 vs. TAIR 10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 176.4 bits (446), Expect = 5.7e-44
Identity = 103/393 (26.21%), Postives = 191/393 (48.60%), Query Frame = 0


Query: 74  PTPNAYHFVLKTLARTSQFHHIPIVLDRLQRVEKFETPEYIFADLIKIYGQIDRIQDAIT 133
           P  + ++ ++K L R  Q     ++L+ +         E  F  +++ Y +   +  A+ 
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSY-GLVPDEKTFTTVMQGYIEEGDLDGALR 246

Query: 134 LFRRIPMFRCVPSTFSLNSLLSVLCRNG---EGLRMVPEIVLDSQTMGIRLEESTFRILI 193
           +  ++  F C  S  S+N ++   C+ G   + L  + E+   S   G   ++ TF  L+
Sbjct: 247 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM---SNQDGFFPDQYTFNTLV 306

Query: 194 TALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVLSFLEQMRQQG 253
             LC+   V HA+EI   M+ EGY  +    + ++S LC  K     E +  L+QM  + 
Sbjct: 307 NGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLC--KLGEVKEAVEVLDQMITRD 366

Query: 254 FCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGVIAEGDYKMAD 313
             P  V Y+ +I    +      A +L   + + G  PD+  +  ++ G+    ++++A 
Sbjct: 367 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 426

Query: 314 ELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDVITYNILLETL 373
           ELF+E+   G  PD +TYN+ I  LC +G  +  + M+  M+  GC   VITYN L++  
Sbjct: 427 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 486

Query: 374 CKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEEMLGSRFPPQI 433
           CK  K  EA ++  EM++ G++ N  T+  +I+GL  +  V +A  L+++M+     P  
Sbjct: 487 CKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDK 546

Query: 434 STFGEILSWLCKRDMVGKALELLKLMVGKNFSP 464
            T+  +L+  C+   + KA ++++ M      P
Sbjct: 547 YTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEP 573

[Close]

BLAST of Lcy06g023780 vs. TAIR 10
Match: AT3G22470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 170.6 bits (431), Expect = 3.1e-42
Identity = 105/389 (26.99%), Postives = 190/389 (48.84%), Query Frame = 0


Query: 108 FETPEYIFADLIKIYGQIDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNG---EGL 167
           +E     F+ L+  +    R+ +A+ L  R+   +  P   ++++L++ LC  G   E L
Sbjct: 136 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL 195

Query: 168 RMVPEIVLDSQTMGIRLEESTFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLI 227
            ++  +V      G + +E T+  ++  LC+      A+++F  M       +    S++
Sbjct: 196 VLIDRMV----EYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIV 255

Query: 228 LSSLCEQKKSSGNEVLSFLEQMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKAD 287
           + SLC  K  S ++ LS   +M  +G    VV YS++I      G       +L +M   
Sbjct: 256 IDSLC--KDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR 315

Query: 288 GFKPDIVCYTMVLNGVIAEGDYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAG 347
              PD+V ++ +++  + EG    A EL++E++  G+ PD  TYN  I G CK+      
Sbjct: 316 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEA 375

Query: 348 IQMISHMQELGCKPDVITYNILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMING 407
            QM   M   GC+PD++TY+IL+ + CK  ++ +  +L  E+  KGL  N  T+  ++ G
Sbjct: 376 NQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLG 435

Query: 408 LFDNGDVTEACVLLEEMLGSRFPPQISTFGEILSWLCKRDMVGKALELLKLMVGKNFSPG 467
              +G +  A  L +EM+    PP + T+G +L  LC    + KALE+ + M     + G
Sbjct: 436 FCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLG 495

Query: 468 PKAWEILL--MSSGNELTSVKSLETTLGD 492
              + I++  M + +++    SL  +L D
Sbjct: 496 IGIYNIIIHGMCNASKVDDAWSLFCSLSD 518

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BLAST of Lcy06g023780 vs. TAIR 10
Match: AT1G63150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 167.5 bits (423), Expect = 2.6e-41
Identity = 98/348 (28.16%), Postives = 177/348 (50.86%), Query Frame = 0


Query: 125 IDRIQDAITLFRRIPMFRCVPSTFSLNSLLSVLCRNGEGLRMVPEIVLDSQTMGIRLEES 184
           I ++ DA+ LF  +   R  PS    N LLS + +  +   +V  +    QT+GI  +  
Sbjct: 61  IIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNK-FELVISLGEQMQTLGISHDLY 120

Query: 185 TFRILITALCRINKVGHAMEIFSFMITEGYGLNPGICSLILSSLCEQKKSSGNEVLSFLE 244
           T+ I I   CR +++  A+ + + M+  GY  +    S +L+  C  K+ S  + ++ ++
Sbjct: 121 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRIS--DAVALVD 180

Query: 245 QMRQQGFCPVVVDYSNVIKFFVRRGMSSSAVDLLNKMKADGFKPDIVCYTMVLNGVIAEG 304
           QM + G+ P    ++ +I        +S AV L+++M   G +PD+V Y  V+NG+   G
Sbjct: 181 QMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRG 240

Query: 305 DYKMADELFDELLLFGLVPDVYTYNVYIYGLCKQGNPEAGIQMISHMQELGCKPDVITYN 364
           D  +A  L +++    +  +V  +N  I  LCK  + E  + + + M+  G +P+V+TYN
Sbjct: 241 DIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYN 300

Query: 365 ILLETLCKTGKLVEARKLRSEMQLKGLAENLRTFRIMINGLFDNGDVTEACVLLEEMLGS 424
            L+  LC  G+  +A +L S M  K +  N+ TF  +I+  F  G + EA  L EEM+  
Sbjct: 301 SLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQR 360

Query: 425 RFPPQISTFGEILSWLCKRDMVGKALELLKLMVGKNFSPGPKAWEILL 473
              P   T+  +++  C  + + +A ++ K MV K+  P  + +  L+
Sbjct: 361 SIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLI 405

The following BLAST results are available for this feature:

BLAST of Lcy06g023780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L6Y7	3.8e-109	46.17	Pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Arabidop...	[more]
Q3EDF8	4.7e-43	25.60	Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX...	[more]
Q9LFF1	8.0e-43	26.21	Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop...	[more]
Q6NQ83	4.4e-41	26.99	Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop...	[more]
Q9CAM8	3.7e-40	28.16	Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX...	[more]

BLAST of Lcy06g023780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU83	3.1e-255	87.47	pentatricopeptide repeat-containing protein At2g38420, mitochondrial isoform X1 ...	[more]
A0A6J1IZC4	1.9e-244	84.04	pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Cucurbit...	[more]
A0A6J1F5E3	1.1e-241	83.43	pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Cucurbit...	[more]
A0A0A0LA35	1.4e-231	80.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730720 PE=4 SV=1	[more]
A0A5A7TL23	2.9e-229	80.81	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Lcy06g023780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157332.1	6.3e-255	87.47	pentatricopeptide repeat-containing protein At2g38420, mitochondrial isoform X1 ...	[more]
XP_038903517.1	3.3e-251	86.46	pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa ...	[more]
XP_022983450.1	3.8e-244	84.04	pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita ...	[more]
XP_023527573.1	4.3e-243	83.64	pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucur...	[more]
KAG7017195.1	3.6e-242	83.43	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of Lcy06g023780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38420.1	2.7e-110	46.17	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G09900.1	3.3e-44	25.60	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G53700.1	5.7e-44	26.21	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G22470.1	3.1e-42	26.99	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G63150.1	2.6e-41	28.16	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 436..461 e-value: 0.036 score: 14.3 coord: 185..213 e-value: 0.003 score: 17.7
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 390..421 e-value: 1.6E-6 score: 27.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 432..463 e-value: 1.7E-4 score: 19.5 coord: 326..360 e-value: 3.0E-9 score: 34.5 coord: 291..325 e-value: 6.1E-5 score: 20.9 coord: 258..290 e-value: 1.1E-5 score: 23.3 coord: 361..391 e-value: 7.6E-6 score: 23.8 coord: 397..428 e-value: 1.1E-5 score: 23.3 coord: 185..216 e-value: 0.0012 score: 16.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 323..372 e-value: 1.0E-15 score: 57.7 coord: 254..300 e-value: 1.7E-9 score: 37.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 324..358 score: 12.463056
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 359..393 score: 11.334042
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 254..288 score: 9.361008
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 182..216 score: 9.054091
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 394..428 score: 10.457138
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 429..463 score: 8.900633
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 289..323 score: 9.843305
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 35..197 e-value: 3.9E-14 score: 54.4 coord: 389..484 e-value: 1.0E-14 score: 56.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 198..387 e-value: 1.4E-39 score: 138.3
None	No IPR available	PANTHER	PTHR47933:SF13	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 6..484
None	No IPR available	PANTHER	PTHR47933	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL	coord: 6..484

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g023780.1	Lcy06g023780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding