Lcy06g016400 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g016400
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr06: 37653281 .. 37654667 (-)
RNA-Seq ExpressionLcy06g016400
SyntenyLcy06g016400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGGGAAGAAGTTGCTGGAAAAGGGGGTTCGTTGGAGGATTGGGAATGGAGAAAGGGTAAGTGTGTACGGATCCAGCTGGGTTCCATGTGATACGAACCTGAGGATTGCTTCACCGATGACATTACAGCCTGATGCTAGAGTGAGGGACTTGTTTACGGCGTCAGGGCATTGGAATGAGACCCTTATTCGGCAACACTTTAGCCCTCAAGAGGCAAGGTACATTCTTTCTATTCCCCTACGCCAGGTTGCTTGTGAGGATGTCGTCATTTGGCACTTTGAGAAGTCGGGGCTATATTCAGTAAAGAGTGGTTATCGGGTTGGCCAAGGTCCTCTATTGGCCCGAAGCCCCTCATCTTCGTCTCTAGAGTTAATACATAAATGGTGGAATGACTGCTGGAATATGAGGATGCCAAGCAAGATTAAGATATTTTTTTGGAGGTTGTATTTAGATCGGCTGCCCATGATGGATAATTTGTGCAGACGGGGGGGGGGGGGGGGTGGACTCACCGAACGTATGTGTGTGCTGTGGTAGGATGGGGGAGTCGAGTCTCCACCTGTTCTGGCATTGTAAGCATACGAAGGAGATTATGTGGTCTGCAGGGTTTGGGGCTATTTTGTCCAGATGCAAGGCAGACGACATTAAGTTCCTCCTCCGAGATGTAAAGGATGAGTTGGAGTGGGATCGGTTTGAGGAATGGGTGGTGTTATTATGGGCCATCTGGTACAGGCGGAATGAAATGAGGCAGGGGAAGGAGGTCTCGATGGCGAATCTGGCAGATTGGGTGGTTGGGTATCTGAACGCATTCCGTGATTCGGGGAGGGGGGAGATGGATCTGTTGGGGGGAAGTCCTAGTCGGGCGGTTTACAGGTGGGCGCCGCCAGAGGCTGATGGGTTCAAGGTGAATGTTGATGCGGCCTTTTGTCGGGTGAGCGGAACAGCAGGTGTAGGCGTGGTATGTCGAGATTCTTGGGGGCAGGTGGGTTTCGCAGCTACGGCCTTCTATGAGAATATCAGAGATGCTGACTTTGCAGAAGGTTTGGGGGCTGCTGTCGGCCTGAGACTTGCTGTGGAGACGGCTACTCGACCTTTTGTACTAGAGACTGACTCTATGCGGGTATTCAAGCTGCTACAGCGGGATAGGGAGGAGGTGTCGGAGTTGGGGATGTTGGTGGAGGATGCGGTGAGGGGTGTCCCAGCAGGGTGGTTTATCGGCGGCAACTTTACGTTCAGGGAAGGCAACTGCGTTGCCCATCGTTTGGCAAGGTTGGCGATGGAGGACACATGTGACCGAGTGTGGATGGAAGAAGGCCCTTCATGTGTTTTGGGCTTGTTGGCTGAAGAGGGAGTGCATGAGTTTCCCCAGGCGAGGAGGGGAGGGTGA

mRNA sequence

ATGTGGGGGAAGAAGTTGCTGGAAAAGGGGGTTCGTTGGAGGATTGGGAATGGAGAAAGGGTAAGTGTGTACGGATCCAGCTGGGTTCCATGTGATACGAACCTGAGGATTGCTTCACCGATGACATTACAGCCTGATGCTAGAGTGAGGGACTTGTTTACGGCGTCAGGGCATTGGAATGAGACCCTTATTCGGCAACACTTTAGCCCTCAAGAGGCAAGGTACATTCTTTCTATTCCCCTACGCCAGGTTGCTTGTGAGGATGTCGTCATTTGGCACTTTGAGAAGTCGGGGCTATATTCAGTAAAGAGTGGTTATCGGGTTGGCCAAGGTCCTCTATTGGCCCGAAGCCCCTCATCTTCGTCTCTAGAGTTAATACATAAATGGTGGAATGACTGCTGGAATATGAGGATGCCAAGCAAGATTAAGATATTTTTTTGGAGGATGGGGGAGTCGAGTCTCCACCTGTTCTGGCATTGTAAGCATACGAAGGAGATTATGTGGTCTGCAGGGTTTGGGGCTATTTTGTCCAGATGCAAGGCAGACGACATTAAGTTCCTCCTCCGAGATGTAAAGGATGAGTTGGAGTGGGATCGGTTTGAGGAATGGGTGGTGTTATTATGGGCCATCTGGTACAGGCGGAATGAAATGAGGCAGGGGAAGGAGGTCTCGATGGCGAATCTGGCAGATTGGGTGGTTGGGTATCTGAACGCATTCCGTGATTCGGGGAGGGGGGAGATGGATCTGTTGGGGGGAAGTCCTAGTCGGGCGGTTTACAGGTGGGCGCCGCCAGAGGCTGATGGGTTCAAGGTGAATGTTGATGCGGCCTTTTGTCGGGTGAGCGGAACAGCAGGTGTAGGCGTGGTATGTCGAGATTCTTGGGGGCAGGTGGGTTTCGCAGCTACGGCCTTCTATGAGAATATCAGAGATGCTGACTTTGCAGAAGGTTTGGGGGCTGCTGTCGGCCTGAGACTTGCTGTGGAGACGGCTACTCGACCTTTTGTACTAGAGACTGACTCTATGCGGGTATTCAAGCTGCTACAGCGGGATAGGGAGGAGGTGTCGGAGTTGGGGATGTTGGTGGAGGATGCGGTGAGGGGTGTCCCAGCAGGGTGGTTTATCGGCGGCAACTTTACGTTCAGGGAAGGCAACTGCGTTGCCCATCGTTTGGCAAGGTTGGCGATGGAGGACACATGTGACCGAGTGTGGATGGAAGAAGGCCCTTCATGTGTTTTGGGCTTGTTGGCTGAAGAGGGAGTGCATGAGTTTCCCCAGGCGAGGAGGGGAGGGTGA

Coding sequence (CDS)

ATGTGGGGGAAGAAGTTGCTGGAAAAGGGGGTTCGTTGGAGGATTGGGAATGGAGAAAGGGTAAGTGTGTACGGATCCAGCTGGGTTCCATGTGATACGAACCTGAGGATTGCTTCACCGATGACATTACAGCCTGATGCTAGAGTGAGGGACTTGTTTACGGCGTCAGGGCATTGGAATGAGACCCTTATTCGGCAACACTTTAGCCCTCAAGAGGCAAGGTACATTCTTTCTATTCCCCTACGCCAGGTTGCTTGTGAGGATGTCGTCATTTGGCACTTTGAGAAGTCGGGGCTATATTCAGTAAAGAGTGGTTATCGGGTTGGCCAAGGTCCTCTATTGGCCCGAAGCCCCTCATCTTCGTCTCTAGAGTTAATACATAAATGGTGGAATGACTGCTGGAATATGAGGATGCCAAGCAAGATTAAGATATTTTTTTGGAGGATGGGGGAGTCGAGTCTCCACCTGTTCTGGCATTGTAAGCATACGAAGGAGATTATGTGGTCTGCAGGGTTTGGGGCTATTTTGTCCAGATGCAAGGCAGACGACATTAAGTTCCTCCTCCGAGATGTAAAGGATGAGTTGGAGTGGGATCGGTTTGAGGAATGGGTGGTGTTATTATGGGCCATCTGGTACAGGCGGAATGAAATGAGGCAGGGGAAGGAGGTCTCGATGGCGAATCTGGCAGATTGGGTGGTTGGGTATCTGAACGCATTCCGTGATTCGGGGAGGGGGGAGATGGATCTGTTGGGGGGAAGTCCTAGTCGGGCGGTTTACAGGTGGGCGCCGCCAGAGGCTGATGGGTTCAAGGTGAATGTTGATGCGGCCTTTTGTCGGGTGAGCGGAACAGCAGGTGTAGGCGTGGTATGTCGAGATTCTTGGGGGCAGGTGGGTTTCGCAGCTACGGCCTTCTATGAGAATATCAGAGATGCTGACTTTGCAGAAGGTTTGGGGGCTGCTGTCGGCCTGAGACTTGCTGTGGAGACGGCTACTCGACCTTTTGTACTAGAGACTGACTCTATGCGGGTATTCAAGCTGCTACAGCGGGATAGGGAGGAGGTGTCGGAGTTGGGGATGTTGGTGGAGGATGCGGTGAGGGGTGTCCCAGCAGGGTGGTTTATCGGCGGCAACTTTACGTTCAGGGAAGGCAACTGCGTTGCCCATCGTTTGGCAAGGTTGGCGATGGAGGACACATGTGACCGAGTGTGGATGGAAGAAGGCCCTTCATGTGTTTTGGGCTTGTTGGCTGAAGAGGGAGTGCATGAGTTTCCCCAGGCGAGGAGGGGAGGGTGA

Protein sequence

MWGKKLLEKGVRWRIGNGERVSVYGSSWVPCDTNLRIASPMTLQPDARVRDLFTASGHWNETLIRQHFSPQEARYILSIPLRQVACEDVVIWHFEKSGLYSVKSGYRVGQGPLLARSPSSSSLELIHKWWNDCWNMRMPSKIKIFFWRMGESSLHLFWHCKHTKEIMWSAGFGAILSRCKADDIKFLLRDVKDELEWDRFEEWVVLLWAIWYRRNEMRQGKEVSMANLADWVVGYLNAFRDSGRGEMDLLGGSPSRAVYRWAPPEADGFKVNVDAAFCRVSGTAGVGVVCRDSWGQVGFAATAFYENIRDADFAEGLGAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHRLARLAMEDTCDRVWMEEGPSCVLGLLAEEGVHEFPQARRGG
Homology
BLAST of Lcy06g016400 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.0e-65
Identity = 156/458 (34.06%), Postives = 225/458 (49.13%), Query Frame = 0

Query: 1    MWGKKLLEKGVRWRIGNGERVSVYGSSWVPCDTNLRIASPMTLQPDARVRDLFT-ASGHW 60
            +WG+ LL+KG+RWRIGNG+ V +YG +WVP    L+I S   L   +RV  L     G W
Sbjct: 705  LWGRDLLKKGLRWRIGNGDSVFIYGDNWVPNQPTLKILSSPRLPLVSRVSSLVDHEEGGW 764

Query: 61   NETLIRQHFSPQEARYILSIPLRQVACEDVVIWHFEKSGLYSVKSGYRVG--QGPLLARS 120
               ++R  F+P EA+ ILSIP+ + A ED +IW++EK+G+YSV+SGY+V     P + ++
Sbjct: 765  QGDVVRDEFTPDEAKGILSIPIGRGAEEDRLIWNYEKTGVYSVRSGYKVALLNNPCV-QA 824

Query: 121  PSSSSLELIHKWWNDCWNMRMPSKIKIFFWRM---------------------------- 180
            PSSSS E +  WWN  W M +P+KIK+F WR+                            
Sbjct: 825  PSSSSSEEVRCWWNGFWKMHIPNKIKVFLWRLCLDRLPTGCNLSKRGVEITNCCYFCGRN 884

Query: 181  GESSLHLFWHCKHTKEIMWSAGFGAILSRCKADDIKFLLRDVKDELEWDRFEEWVVLLWA 240
            GE S+HLFW CK  + +  ++ FG +           +LR+  + L    FEE  V++W 
Sbjct: 885  GEDSIHLFWICKFAEALWINSKFGKL-------SPFLILRESHESLSKADFEELCVVIWG 944

Query: 241  IWYRRNEMRQGKEVSMA-----NLADWVVGYLNAFRDSGRGEMDLLGGSPSRAVYRWAPP 300
            +W +RN                 L +W   Y   FR++      + G   + A   W PP
Sbjct: 945  LWNQRNARAFNDSTKTVFKIGMELVEWANKYAMEFREAKSN--PITGRVTNTAEILWQPP 1004

Query: 301  EADGFKVNVDAAFCRVSGTAGVGVVCRDSWGQVGFAATAFYENIRDADFAEGLGAAVGLR 360
            +   +K+N DA+F      AG+G++  +  GQV  AAT + ENI+  D AE + A  GL+
Sbjct: 1005 DEGIYKINTDASFLASDQHAGLGIIIHNDRGQVMAAATKYLENIQSVDMAEAIAAVEGLQ 1064

Query: 361  LAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAVRGVPAGWFIGGNFTFREGN 420
            LA E    P +                E++SE G +V  A            NF  REGN
Sbjct: 1065 LASEIGMHPAL----------------EDLSETGEIVLKAKNFWTQSLHASFNFVKREGN 1124

Query: 421  CVAHRLARLAMEDTCDRVWMEEGPSCVLGLLAEEGVHE 423
              AH LAR A+      +WME+ P  +   L  E + E
Sbjct: 1125 KAAHMLARRALLLHEFSIWMEDWPLELKSCLEMECLEE 1136

BLAST of Lcy06g016400 vs. ExPASy TrEMBL
Match: A0A803P3X4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-57
Identity = 140/459 (30.50%), Postives = 211/459 (45.97%), Query Frame = 0

Query: 1    MWGKKLLEKGVRWRIGNGERVSVYGSSWVPCDTNLRIASPMTLQPDARVRDLFTASGHWN 60
            +WGKK+++KG RWRIG G  V V    W+P     +I     L     V DL   +G W+
Sbjct: 1337 VWGKKIIQKGYRWRIGYGNSVRVLEDPWLPRPVTFKIYDKPPLPDQLYVIDLKKINGEWD 1396

Query: 61   ETLIRQHFSPQEARYILSIPLRQVACEDVVIWHFEKSGLYSVKSGYRVGQGPLLARSPSS 120
            E  +R  F+P +A  IL +P  +   ED V+WH+ K G YSV+SGYR+     L      
Sbjct: 1397 EEFVRAVFNPTDADLILRMPTSEWDIEDKVLWHYSKDGEYSVRSGYRMAAA--LQVRDVQ 1456

Query: 121  SSLELIHKWWNDCWNMRMPSKIKIFFWRMGESSL-------------------------- 180
            S  E+  KWW   W +++P K+K F W++  S L                          
Sbjct: 1457 SDTEVTEKWWRLLWKLKIPPKVKHFVWKLAHSWLPTNAVLARRNIPVEPYCNRCFNGVYE 1516

Query: 181  ---HLFWHCKHTKEIMWSAGFGAILSRCKADDIKFLLRDVKDELEWDRFEEWVVLLWAIW 240
               H  W C+  +E+  S GF   + R  ++D+   L  +   L  + FE ++VL W +W
Sbjct: 1517 DVFHAIWCCRVNREVWKSTGFYGKIQRQGSEDVLAFLMRISTILSKEEFEFFLVLSWNLW 1576

Query: 241  YRRNEMRQGKEVSMA-NLADWVVGYLNAFRDSGRGEMDLLGGSPSRAVYRWAPPEADGFK 300
            Y RN +  G     A  + +W   +L+ FR+S   + D       R   RW PP  D FK
Sbjct: 1577 YVRNSVNHGGHKPQACAILEWCSKFLSEFRESNTPKRD----RQVREAARWTPPGIDAFK 1636

Query: 301  VNVDAAFCRVSGTAGVGVVCRDSWGQV-GFAATAFYENIRDADFAEGLGAAVGLRLAVET 360
            +NVDA     +G A +  V RD  G V   AAT   +N+     AE    A GL+  ++ 
Sbjct: 1637 INVDAGVRTEAGVASISSVVRDHAGMVHSAAATVLLQNMTPL-HAELQAIARGLQAGIQC 1696

Query: 361  ATRPFVLETDSMRVFKLLQRDRE---EVSELGMLVEDAVRGVPAGWFIGGNFTFREGNCV 420
                F +E+D ++   L+QR  E   +V E+   +   ++ V      G +F +RE N V
Sbjct: 1697 NLPAFNVESDCLQAVTLVQRKEEGCRDVDEIVAHIRSLLQNVRVR---GVSFVYREANKV 1756

Query: 421  AHRLARLAMEDTCDRVWMEEGPSCVLGLLAEEGVHEFPQ 426
            AH LA  A+ +    +W+   P C    +  +  +  P+
Sbjct: 1757 AHILANEALLNKASALWIGVVPPCASQAVMNDSPNPLPR 1785

BLAST of Lcy06g016400 vs. ExPASy TrEMBL
Match: A0A803PM68 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.1e-57
Identity = 140/443 (31.60%), Postives = 209/443 (47.18%), Query Frame = 0

Query: 1   MWGKKLLEKGVRWRIGNGERVSVYGSSWVPCDTNLRIASPMTLQPDARVRDLFTASGHWN 60
           +WGKK+++KG RWRIGNG  V V    W+P     ++    +L     V DL   +G W+
Sbjct: 252 VWGKKIIQKGYRWRIGNGNSVRVLEDPWLPRPVTFKVYDKPSLPEGMYVVDLMKGNGEWD 311

Query: 61  ETLIRQHFSPQEARYILSIPLRQVACEDVVIWHFEKSGLYSVKSGYRVGQGPLLARSPSS 120
           E  IR  F+P +A  IL +P  +   ED ++WH+ K+G YSV+SGYR+     L      
Sbjct: 312 EEFIRAFFNPTDAELILGMPTSEWEIEDKILWHYSKNGEYSVRSGYRMAAA--LQVHDIQ 371

Query: 121 SSLELIHKWWNDCWNMRMPSKIKIFFWRMGESSL-------------------------- 180
           S+ E   +WW   W +++P K+K F W+M  S L                          
Sbjct: 372 SNTEATERWWRLLWKLKIPPKVKHFVWKMAHSWLPTNSALAYRKVQVEPYCTRCSSGAYE 431

Query: 181 ---HLFWHCKHTKEIMWSAGF-GAILSRCKADDIKFLLRDVKDELEWDRFEEWVVLLWAI 240
              H  W C+   E+    GF G I  + K D + FL+R +      D +E +++L W +
Sbjct: 432 NVFHALWGCRVNCEVWKLTGFHGRIKRQGKEDVLAFLMR-LSGMFSKDDWEFFLILSWNL 491

Query: 241 WYRRNEMRQ-GKEVSMANLADWVVGYLNAFRDSGRGEMDLLGGSPSRAVYRWAPPEADGF 300
           WY RN +   G +   A + DW   +L+ F+D G G         +RA  RW PP  D F
Sbjct: 492 WYIRNSVNHGGHKPQAAAVVDWCGRFLSEFKD-GCGPKK---HGVARAEARWQPPMRDSF 551

Query: 301 KVNVDAAF-CRVSGTAGVGVVCRDSWGQVGFAATAFYENIRDADFAEGLGAAVGLRLAVE 360
           KVNVDA       G      V RD  G+V  A       +     AE +  + GL+  + 
Sbjct: 552 KVNVDAGVKVGGGGYTSFSSVVRDHTGRVCAANATVVRKVYSPLHAELVAISAGLQAGIH 611

Query: 361 TATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAVRGVPAGWFIGG-NFTFREGNCVA 411
           T    F++ETD ++   L+Q++ E   +L  L+   ++ +     +GG NF +RE N VA
Sbjct: 612 TRLPSFIVETDCLQAVNLVQQEEEGCRDLDGLIAH-IKCLLQDVRVGGINFVYREANQVA 671

BLAST of Lcy06g016400 vs. ExPASy TrEMBL
Match: A0A5E4FZN9 (PREDICTED: retrotransposon OS=Prunus dulcis OX=3755 GN=ALMOND_2B007697 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.3e-54
Identity = 139/453 (30.68%), Postives = 207/453 (45.70%), Query Frame = 0

Query: 2    WGKKLLEKGVRWRIGNGERVSVYGSSWVPCDTNLRIASPMTLQPDARVRDLFTASGHWNE 61
            WGK+LL KG+RWR+GNG  + VY   W+P  +  +I SP  L     V DLFT+SG WN 
Sbjct: 845  WGKELLNKGLRWRVGNGVSIQVYTDKWLPAPSFFKIMSPPQLPLSTLVCDLFTSSGQWNV 904

Query: 62   TLIRQHFSPQEARYILSIPLRQVACEDVVIWHFEKSGLYSVKSGYRVG--QGPLLARSPS 121
             L++  F  QE    L IPL  +A  D +IWH+E++G+YSVKSGYR+   +   ++  P 
Sbjct: 905  PLLKDIFWDQEVDAKLQIPLASLAGHDCLIWHYERNGMYSVKSGYRLACLEKDKMSGEP- 964

Query: 122  SSSLELIHKWWNDCWNMRMPSKIKIFFW----------------------------RMGE 181
            S  ++L  K+W   W +++P+KIK F W                            R  E
Sbjct: 965  SVRVDLNSKFWKKIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPNCHRKAE 1024

Query: 182  SSLHLFWHCKHTKEIMWSAGFGAILSRCKADDIKFLLRDVKDELEWDRFEEWVVLLWAIW 241
            S LH  W C+  KE+  ++ +G +    + +  + L   ++     +    +  L W +W
Sbjct: 1025 SVLHAVWLCETAKEVWRNSAWGNVCEEWRVNSFRELWHALQLSSSGEEQGLFAYLCWGLW 1084

Query: 242  YRRNE-MRQGKEVSMANLADWVVGYLNAFRDSGRGEMDLLG--GSPSRAVYRWAPPEADG 301
             RRN  + +GK  +   L   +      F ++      + G   SP   ++ W PP A  
Sbjct: 1085 NRRNSFIFEGKSETATQLLHRMTKLAQEFSNANNLSHTIHGRQSSPQAPLHGWRPPPAGI 1144

Query: 302  FKVNVDAAFCRVSGTAGVGVVCRDSWGQVGFAATAFYENIRDADFAEGLGAAVGLRLAVE 361
            +K+NVD A        GVGVV R++ G+   A     +    A   E +    GLR A++
Sbjct: 1145 YKINVDGAVKSGDSVRGVGVVVRNANGEFMAACVRRIQASYGARQTELMATIEGLRFAID 1204

Query: 362  TATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDA------VRGVPAGWFIGGNFTFRE 416
                  VLE D+      +    E     G+L+E+        R V   W      T R 
Sbjct: 1205 MGFTAAVLEMDAQDCINSILSTEECNGIDGLLIEEVNYLLHNFRAVVCQW------TPRS 1264

BLAST of Lcy06g016400 vs. ExPASy TrEMBL
Match: A0A803PV25 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.5e-53
Identity = 129/441 (29.25%), Postives = 198/441 (44.90%), Query Frame = 0

Query: 1    MWGKKLLEKGVRWRIGNGERVSVYGSSWVPCDTNLRIASPMTLQPDARVRDLFTASGHWN 60
            +WGKK+++ G RWRIGNG  V V    W+P     +I     L  +  V DL   +G W+
Sbjct: 1466 VWGKKIIQAGYRWRIGNGNSVRVLDDPWLPRPVTFKIYDKPPLPDNLHVIDLKKGNGEWD 1525

Query: 61   ETLIRQHFSPQEARYILSIPLRQVACEDVVIWHFEKSGLYSVKSGYRVGQGPLLARSPSS 120
            E  +R  F+P +A  IL +   +   ED ++WH+ K G YSV+SGYR+     L      
Sbjct: 1526 EEFVRAVFNPTDAELILQMATSECDIEDKILWHYSKDGEYSVRSGYRMAAA--LEVRDIQ 1585

Query: 121  SSLELIHKWWNDCWNMRMPSKIKIFFWRMG-----------------------------E 180
            S+ E  ++WW   W +++P K+K F W+M                              E
Sbjct: 1586 SNTEATNRWWRQLWKLKIPPKVKHFVWKMAHSWIPTNSALAHRKVQIEPYCTRCSSGAYE 1645

Query: 181  SSLHLFWHCKHTKEIMWSAGFGAILSRCKADDIKFLLRDVKDELEWDRFEEWVVLLWAIW 240
            +  H  W C+   ++   +GF + + R   +D+   L  +   L  + FE ++VL W +W
Sbjct: 1646 NVFHALWSCRVNCDVWKISGFSSKIKRQGKEDVLAFLMRMSSSLAKEDFEYFLVLTWNLW 1705

Query: 241  YRRNEMRQG--KEVSMANLADWVVGYLNAFRDSGRGEMDLLGGSPSRAVYRWAPPEADGF 300
            Y RN +  G  K V+ A + +W   +L  FRDS   +        +RA  RW  P    +
Sbjct: 1706 YIRNSVNHGGHKPVAAA-IVEWCSKFLAEFRDSNVSQK----AGAARAAARWVAPVRGSY 1765

Query: 301  KVNVDAAFCRVSGTAGVGVVCRDSWGQVGFAATAFYENIRDADFAEGLGAAVGLRLAVET 360
             +NVDA      G A V  V RD  G+V  AA    E       AE    A G++  ++ 
Sbjct: 1766 TINVDAGVKVGEGLASVSSVMRDHEGRVKVAAVRVVEKELSPLHAELTAIADGIKAGLQQ 1825

Query: 361  ATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHR 411
                F +ETD ++   L+ +D     ++  LV      +      G +F +RE N  AH 
Sbjct: 1826 KLPSFHVETDCLQAVNLVLKDDGGCRDVDGLVTQIRCLLQDVRVHGISFVYREANQFAHV 1885

BLAST of Lcy06g016400 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 260.8 bits (665), Expect = 2.1e-65
Identity = 156/458 (34.06%), Postives = 225/458 (49.13%), Query Frame = 0

Query: 1    MWGKKLLEKGVRWRIGNGERVSVYGSSWVPCDTNLRIASPMTLQPDARVRDLFT-ASGHW 60
            +WG+ LL+KG+RWRIGNG+ V +YG +WVP    L+I S   L   +RV  L     G W
Sbjct: 705  LWGRDLLKKGLRWRIGNGDSVFIYGDNWVPNQPTLKILSSPRLPLVSRVSSLVDHEEGGW 764

Query: 61   NETLIRQHFSPQEARYILSIPLRQVACEDVVIWHFEKSGLYSVKSGYRVG--QGPLLARS 120
               ++R  F+P EA+ ILSIP+ + A ED +IW++EK+G+YSV+SGY+V     P + ++
Sbjct: 765  QGDVVRDEFTPDEAKGILSIPIGRGAEEDRLIWNYEKTGVYSVRSGYKVALLNNPCV-QA 824

Query: 121  PSSSSLELIHKWWNDCWNMRMPSKIKIFFWRM---------------------------- 180
            PSSSS E +  WWN  W M +P+KIK+F WR+                            
Sbjct: 825  PSSSSSEEVRCWWNGFWKMHIPNKIKVFLWRLCLDRLPTGCNLSKRGVEITNCCYFCGRN 884

Query: 181  GESSLHLFWHCKHTKEIMWSAGFGAILSRCKADDIKFLLRDVKDELEWDRFEEWVVLLWA 240
            GE S+HLFW CK  + +  ++ FG +           +LR+  + L    FEE  V++W 
Sbjct: 885  GEDSIHLFWICKFAEALWINSKFGKL-------SPFLILRESHESLSKADFEELCVVIWG 944

Query: 241  IWYRRNEMRQGKEVSMA-----NLADWVVGYLNAFRDSGRGEMDLLGGSPSRAVYRWAPP 300
            +W +RN                 L +W   Y   FR++      + G   + A   W PP
Sbjct: 945  LWNQRNARAFNDSTKTVFKIGMELVEWANKYAMEFREAKSN--PITGRVTNTAEILWQPP 1004

Query: 301  EADGFKVNVDAAFCRVSGTAGVGVVCRDSWGQVGFAATAFYENIRDADFAEGLGAAVGLR 360
            +   +K+N DA+F      AG+G++  +  GQV  AAT + ENI+  D AE + A  GL+
Sbjct: 1005 DEGIYKINTDASFLASDQHAGLGIIIHNDRGQVMAAATKYLENIQSVDMAEAIAAVEGLQ 1064

Query: 361  LAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAVRGVPAGWFIGGNFTFREGN 420
            LA E    P +                E++SE G +V  A            NF  REGN
Sbjct: 1065 LASEIGMHPAL----------------EDLSETGEIVLKAKNFWTQSLHASFNFVKREGN 1124

Query: 421  CVAHRLARLAMEDTCDRVWMEEGPSCVLGLLAEEGVHE 423
              AH LAR A+      +WME+ P  +   L  E + E
Sbjct: 1125 KAAHMLARRALLLHEFSIWMEDWPLELKSCLEMECLEE 1136

BLAST of Lcy06g016400 vs. NCBI nr
Match: XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis])

HSP 1 Score: 225.7 bits (574), Expect = 7.6e-55
Identity = 135/441 (30.61%), Postives = 211/441 (47.85%), Query Frame = 0

Query: 1    MWGKKLLEKGVRWRIGNGERVSVYGSSWVPCDTNLRIASPMTLQPDARVRDLFTASGHWN 60
            MWG+++++KG+RWRIGNG++++++  +W+P     R   P++L   + V DL  A   W+
Sbjct: 947  MWGRQVIKKGMRWRIGNGKKIAIFSDNWLPRPETFRPIFPLSLPVSSVVADLIKADNQWD 1006

Query: 61   ETLIRQHFSPQEARYILSIPLRQVACEDVVIWHFEKSGLYSVKSGYRVGQGPLLARSPSS 120
            E  +RQHF   +   IL IPL     ED V+WH++K G YSVKSGY++    L ++ P S
Sbjct: 1007 EIKLRQHFLDVDTAEILKIPLPAEKAEDEVLWHYDKRGNYSVKSGYQLA---LRSKFPDS 1066

Query: 121  SS-LELIHKWWNDCWNMRMPSKIKIFFWRMGESSL------------------------- 180
            +S  E  HK+W+  W + +P K+KIF WR   + L                         
Sbjct: 1067 TSCTEASHKYWSALWTLELPEKLKIFMWRASNNLLPSAENLWKRKVVEEPTCKRCKLSVE 1126

Query: 181  ---HLFWHCKHTKEIMWSAGFGAILSRCKADDIKFLLRDVKDELEWDRFEEWVVLLWAIW 240
               H    CK  ++I   + F A      + DI   L+++  EL     E  V L W+ W
Sbjct: 1127 TISHALLECKAARKIWLQSPFSAPRLEANSQDIFSTLQNMAKELRKSDLELMVALCWSAW 1186

Query: 241  YRRNE-MRQGKEVSMANLADWVVGYLNAFRDSGRGEMDLLGGSPSRAVYRWAPPEADGFK 300
            Y RN+ +  G+E++    A      L AF+   + +   +  S       W PP  + FK
Sbjct: 1187 YARNKCIFDGRELNPIISAAKAESVLTAFQRVRKPQQSHISISIKEKQQEWLPPPQNVFK 1246

Query: 301  VNVDAAFCRVSGTAGVGVVCRDSWGQVGFAATAFYENI--RDADFAEGLGAAVGLRLAVE 360
            VNVDAAF   + +AGVG V RDS G++   A    +N+    A  AE      GL+LA  
Sbjct: 1247 VNVDAAFNSKNLSAGVGAVIRDSNGKI--VAAGVNQNLLKGSASLAEAEAVLWGLQLARN 1306

Query: 361  TATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAH 410
                  ++E+D + V +L+   +   SE+   +      +     +  N   R  N  AH
Sbjct: 1307 ADVSSLIIESDCLEVVQLVNNTKGSRSEIFWTILAIQNQMKIFQKVVVNHIPRHCNACAH 1366

BLAST of Lcy06g016400 vs. NCBI nr
Match: VVA32947.1 (PREDICTED: retrotransposon [Prunus dulcis])

HSP 1 Score: 221.9 bits (564), Expect = 1.1e-53
Identity = 139/453 (30.68%), Postives = 207/453 (45.70%), Query Frame = 0

Query: 2    WGKKLLEKGVRWRIGNGERVSVYGSSWVPCDTNLRIASPMTLQPDARVRDLFTASGHWNE 61
            WGK+LL KG+RWR+GNG  + VY   W+P  +  +I SP  L     V DLFT+SG WN 
Sbjct: 845  WGKELLNKGLRWRVGNGVSIQVYTDKWLPAPSFFKIMSPPQLPLSTLVCDLFTSSGQWNV 904

Query: 62   TLIRQHFSPQEARYILSIPLRQVACEDVVIWHFEKSGLYSVKSGYRVG--QGPLLARSPS 121
             L++  F  QE    L IPL  +A  D +IWH+E++G+YSVKSGYR+   +   ++  P 
Sbjct: 905  PLLKDIFWDQEVDAKLQIPLASLAGHDCLIWHYERNGMYSVKSGYRLACLEKDKMSGEP- 964

Query: 122  SSSLELIHKWWNDCWNMRMPSKIKIFFW----------------------------RMGE 181
            S  ++L  K+W   W +++P+KIK F W                            R  E
Sbjct: 965  SVRVDLNSKFWKKIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPNCHRKAE 1024

Query: 182  SSLHLFWHCKHTKEIMWSAGFGAILSRCKADDIKFLLRDVKDELEWDRFEEWVVLLWAIW 241
            S LH  W C+  KE+  ++ +G +    + +  + L   ++     +    +  L W +W
Sbjct: 1025 SVLHAVWLCETAKEVWRNSAWGNVCEEWRVNSFRELWHALQLSSSGEEQGLFAYLCWGLW 1084

Query: 242  YRRNE-MRQGKEVSMANLADWVVGYLNAFRDSGRGEMDLLG--GSPSRAVYRWAPPEADG 301
             RRN  + +GK  +   L   +      F ++      + G   SP   ++ W PP A  
Sbjct: 1085 NRRNSFIFEGKSETATQLLHRMTKLAQEFSNANNLSHTIHGRQSSPQAPLHGWRPPPAGI 1144

Query: 302  FKVNVDAAFCRVSGTAGVGVVCRDSWGQVGFAATAFYENIRDADFAEGLGAAVGLRLAVE 361
            +K+NVD A        GVGVV R++ G+   A     +    A   E +    GLR A++
Sbjct: 1145 YKINVDGAVKSGDSVRGVGVVVRNANGEFMAACVRRIQASYGARQTELMATIEGLRFAID 1204

Query: 362  TATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDA------VRGVPAGWFIGGNFTFRE 416
                  VLE D+      +    E     G+L+E+        R V   W      T R 
Sbjct: 1205 MGFTAAVLEMDAQDCINSILSTEECNGIDGLLIEEVNYLLHNFRAVVCQW------TPRS 1264

BLAST of Lcy06g016400 vs. NCBI nr
Match: XP_024037590.1 (uncharacterized protein LOC112097210 [Citrus clementina])

HSP 1 Score: 215.7 bits (548), Expect = 7.8e-52
Identity = 132/443 (29.80%), Postives = 203/443 (45.82%), Query Frame = 0

Query: 1    MWGKKLLEKGVRWRIGNGERVSVYGSSWVPCDTNLRIASPMTLQPDARVRDLFTASGHWN 60
            +WG+++L KG RWRIGNG+ V VYG++W+P  T  +  S  ++  D  V +L      W 
Sbjct: 711  VWGRQVLHKGARWRIGNGQNVLVYGNNWIPRPTTFKPISAPSMGTDTTVAELIDEKQQWR 770

Query: 61   ETLIRQHFSPQEARYILSIPLRQVACEDVVIWHFEKSGLYSVKSGYRVGQGPLLARSPSS 120
            E LI QHF P++A  I+ IPL +   ED +IWH++K G YSVKSGY+V         PS 
Sbjct: 771  EDLILQHFRPEDAEAIMQIPLPKRPKEDQLIWHYDKKGYYSVKSGYQVAMRIKFPEDPSC 830

Query: 121  SSLELIHKWWNDCWNMRMPSKIKIFFWRMG----------------------------ES 180
            S+ +     W   W + +P K+KIF WR                              E+
Sbjct: 831  SNHD--QNLWRFIWKLAIPEKVKIFLWRAAHDLLPTAENLWKKKVLQEPMCQSCHCHVET 890

Query: 181  SLHLFWHCKHTKEIMWSAGFGAILSRCKADDIKFLLRDVKDELEWDRFEEWVVLLWAIWY 240
              H    C   ++I   +     L      DI ++L+    +       E   LLWAIW 
Sbjct: 891  VSHALVECNRARKIWRYSNLAEELRGVYRCDIVWMLQFWPRQHAKVEGAEVAALLWAIWK 950

Query: 241  RRNE-MRQGKEVSMANLADWVVGYLNAFRDSGRGEMDLLGGSPSRAVYRWAPPEADGFKV 300
             RN+ + +GK+ +   +       + +F+   + EM       +    +W+PP     KV
Sbjct: 951  ARNKWLFEGKKENPLRVVANAEAIVESFKKIRQPEMVYKTKGNAERQKQWSPPPNGWQKV 1010

Query: 301  NVDAAFCRVSGTAGVGVVCRDSWGQVGFAATAFYENIRDADFAEGLGAAVGLRLAVETAT 360
            NVDAA    +  AG+GVV RDS G    AA            AE      GL++A +   
Sbjct: 1011 NVDAAVDVENQMAGLGVVVRDSDGNCRAAAIKSLRLPGSVAMAEATAMEWGLKVAEKAHI 1070

Query: 361  RPFVLETDSMRVFKLLQRDREEVSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHRLA 415
               + E+DS+ V  L+ +    ++E+G L+ D    +          + R+ N  AH LA
Sbjct: 1071 TFGIFESDSLEVIDLINKKSSSLTEIGWLISDIQENLQNFQNFKAQHSPRDCNYAAHSLA 1130

BLAST of Lcy06g016400 vs. NCBI nr
Match: XP_024157591.1 (uncharacterized protein LOC112165325 [Rosa chinensis])

HSP 1 Score: 215.3 bits (547), Expect = 1.0e-51
Identity = 140/448 (31.25%), Postives = 199/448 (44.42%), Query Frame = 0

Query: 1    MWGKKLLEKGVRWRIGNGERVSVYGSSWVPCDTNLRIASPM---TLQPDARVRDLFTASG 60
            MWGK++++ G RWRIG+G RVSV    W+PC  + ++ SP+   TL    +V  LFT +G
Sbjct: 757  MWGKQVIDMGTRWRIGDGRRVSVLADKWLPCPVSFKVVSPIPLTTLTMQHKVESLFTETG 816

Query: 61   HWNETLIRQHFSPQEARYILSIPLRQVACEDVVIWHFEKSGLYSVKSGYRVGQGPLLAR- 120
             WN  LI+  F   EA  IL +PL      D ++WHF K+G Y+VKSGY V +  +L + 
Sbjct: 817  AWNVPLIQSWFLSHEAEMILGMPLGLRNVPDKLVWHFSKNGSYNVKSGYWVARDMMLRQR 876

Query: 121  -SPSSSSLELIHKWWNDCWNMRMPSKIKIFFWRM-------------------------- 180
               + SS     K W   W +  P KIK+F WR                           
Sbjct: 877  GDTAGSSTNECKKVWEKIWGVHAPHKIKVFMWRAMKGFLPCAANLKQKKVLEDSRCWQCG 936

Query: 181  --GESSLHLFWHCKHTKEIMWSAGFGAILSRCKADDIKFLLRDVKDELEWDRFEEWVVLL 240
               ES +H  W C   K+         +  R +      L+  +         E +    
Sbjct: 937  WHSESVMHALWDCPTAKKTWKKTFLHGVCKRWQVPTFLDLVHHICPTASATELETFCFTA 996

Query: 241  WAIWYRRN----EMRQGKEVSMANLA-DWVVGYLNAFRDSGRGEMDLLGGSPSRAVYRWA 300
            W IW  RN    E +  K V +A LA +W   + N     G      LG   +     W 
Sbjct: 997  WWIWRNRNLTRFEEKNLKPVEVARLAMEWQNEFANL---GGLKHKSTLGAVHAHVC--WK 1056

Query: 301  PPEADGFKVNVDAAFCRVSGTAGVGVVCRDSWGQV-GFAATAFYENIRDADFAEGLGAAV 360
            PP+    K+N D A    +G  G+GVV RD+ G + G  A     NI      E L    
Sbjct: 1057 PPQLGHLKMNFDGAHDGKNGVCGLGVVFRDTQGNLKGAMAVPQIGNIAPRSI-EALALLH 1116

Query: 361  GLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAVRGVPAGWFIGGNFTFR 410
            GLR A+        +E D++ V   LQ + E+ S  G L+++    V +      +F  R
Sbjct: 1117 GLRFALHVGFTMIEIEGDALSVINALQENSEDYSAEGHLIDEVKFLVQSFTSCSSHFVKR 1176

BLAST of Lcy06g016400 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 2.5e-11
Identity = 76/356 (21.35%), Postives = 139/356 (39.04%), Query Frame = 0

Query: 3   GKKLLEKGVRWRIGNGERVSVYGSSWVPCDTNLRIASPMTLQPDARVRDLFTASG---HW 62
           G  LL+KG R  IG+G+ + +   + V       + +  T + +  + +LF   G    W
Sbjct: 30  GIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYK-EMTINNLFERKGSYYFW 89

Query: 63  NETLIRQHFSPQEARYILSIPLRQVACEDVVIWHFEKSGLYSVKSGYRV----GQGPLLA 122
           +++ I Q     +  +I  I L +    D +IW++  +G Y+V+SGY +        + A
Sbjct: 90  DDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPA 149

Query: 123 RSPSSSSLELIHKWWNDCWNMRMPSKIKIFFWRM-------------------------- 182
            +P   S++L  +     WN+ +  K+K F WR                           
Sbjct: 150 INPPHGSIDLKTR----IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCH 209

Query: 183 --GESSLHLFWHCKHTKEIMWSAGFGAILSRCKADDIKFLLRDVKDELEWDRFEEW---- 242
              ES  H  + C         +    I ++  ++D +  + ++ + ++     ++    
Sbjct: 210 RENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLL 269

Query: 243 -VVLLWAIWYRR-----NEMRQGKEVSMANLADWVVGYLNAFRDSGRGEMDLLGGSPSRA 302
            V L+W IW  R     N+ R+    ++ +       +LNA +   +        SP+R 
Sbjct: 270 PVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTP------SPTRQ 329

Query: 303 V----YRWAPPEADGFKVNVDAAFCRVSGTAGVGVVCRD------SWGQVGFAATA 304
           +      W  P A   K N DA F      A  G + R+      SWG +  A T+
Sbjct: 330 IAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTS 374

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DAR41.0e-6534.06uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A803P3X41.0e-5730.50Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PM685.1e-5731.60Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A5E4FZN95.3e-5430.68PREDICTED: retrotransposon OS=Prunus dulcis OX=3755 GN=ALMOND_2B007697 PE=4 SV=1[more]
A0A803PV254.5e-5329.25Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022150918.12.1e-6534.06uncharacterized protein LOC111018954 [Momordica charantia][more]
XP_024950112.17.6e-5530.61uncharacterized protein LOC112496847 [Citrus sinensis][more]
VVA32947.11.1e-5330.68PREDICTED: retrotransposon [Prunus dulcis][more]
XP_024037590.17.8e-5229.80uncharacterized protein LOC112097210 [Citrus clementina][more]
XP_024157591.11.0e-5131.25uncharacterized protein LOC112165325 [Rosa chinensis][more]
Match NameE-valueIdentityDescription
AT3G09510.12.5e-1121.35Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 272..394
e-value: 4.1E-17
score: 62.2
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 268..398
e-value: 2.9E-8
score: 35.8
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 7..352
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 271..392
e-value: 7.30848E-12
score: 60.4056
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 269..397

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g016400.1Lcy06g016400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity