Lcy06g005380 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g005380
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transforming growth factor-beta receptor-associated protein 1 isoform X1
Location	Chr06: 4961854 .. 4962817 (+)
RNA-Seq Expression	Lcy06g005380
Synteny	Lcy06g005380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGACCCCGACCGACCGATGCTCAGCCCTACTAATGTTAACTGTTATCTGTGTAGGAGAAAGGCAGAGGATGGAGTCCACTTATTTTGGCAATGCAAACTGGTAAGGAAATTGTGGTCTAGCCTATTTCCTCCTCTAAATCAGGTTTTTGCCTCGTGTAGGGATTGGTGGAGCTTCAAGGAGTATTGGGAATTTCTGCTCAAAACTATTGGCAGAGATGAAGCGGGGAGAGCAAGTCACCTTATTTGAGCCATTTGGCAAACGAGGAACCAGTTCAAGAAGTCGAATTCCAGGAAAGATACAAATCAATTTCACAAAGATATTATGAGTAAAATGAGCTACTACCAGAATCAGAGTAAGTACCAGGAGAAAAGCTCAGCGAAGAACCTCCAGAGTCATGGGTGTTGGAATCCGTCGTCCGTTGGCCATTGGAAGATGAACTCGGACGCAACCTGGTTCGACTCCTCAAATTCGGGGGGAGTGGGATGGATCATTCGTGACTCATCCGGTTCTTTGATCGAAGCAGGGTGCAAGATAGTTGAGGCGAAAGATGAAATAAAAAATTTGGAAGCCATAGCCATTTTAGATGGTCTCAAGCATTTATCAGAAAGCTACAGATCGTACTCGGAGATGGATAAGCCTCCGTTGGTGGTGGAATCGAAGTTTTCAAGCTCCTTAACCTTGAATCTGAAGATTGCTCGGAAATCTCGCTGATTGTCGACGAGATTGAGGATCAGGCAAAGCAATTGAATGTGGTTGCCTTCGTGCATTGTCCCAGAAAATGTAATTTTTTGGCGCATAGACTAGCGCACGCGTCCGTTTCTAAAGGCAATTTTGCCTTCTGCTCTTTTGACCATTCTCATTACTTGAGAATGGATTTCGGCCAATTAGATTTTTGTTGTAAAGGCTGGTTTTTCTCCATTTTGGAGAAAGAAGTTGTTGTACCTAACTTTTGTCCCCTTTAA

mRNA sequence

CCGACCCCGACCGACCGATGCTCAGCCCTACTAATGTTAACTGTTATCTGTGTAGGAGAAAGGCAGAGGATGGAGTCCACTTATTTTGGCAATGCAAACTGGTAAGGAAATTGTGGTCTAGCCTATTTCCTCCTCTAAATCAGGTTTTTGCCTCGTGTAGGGATTGGTGGAGCTTCAAGGAGTATTGGGAATTTCTGCTCAAAACTATTGGCAGAGATGAAGCGGGGAGAGCAAGTCACCTTATTTGAGCCATTTGGCAAACGAGGAACCAGTTCAAGAAGTCGAATTCCAGGAAAGATACAAATCAATTTCACAAAGATATTATGAGTAAAATGAGCTACTACCAGAATCAGAGTAAGTACCAGGAGAAAAGCTCAGCGAAGAACCTCCAGAGTCATGGGTGTTGGAATCCGTCGTCCGTTGGCCATTGGAAGATGAACTCGGACGCAACCTGGTTCGACTCCTCAAATTCGGGGGGAGTGGGATGGATCATTCGTGACTCATCCGGTTCTTTGATCGAAGCAGGGTGCAAGATAGTTGAGGCGAAAGATGAAATAAAAAATTTGGAAGCCATAGCCATTTTAGATGGTCTCAAGCATTTATCAGAAAGCTACAGATCGTACTCGGAGATGGATAAGCCTCCGTTGGTGGTGGAATCGAAGTTTTCAAGCTCCTTAACCTTGAATCTGAAGATTGCTCGGAAATCTCGCTGATTGTCGACGAGATTGAGGATCAGGCAAAGCAATTGAATGTGGTTGCCTTCGTGCATTGTCCCAGAAAATGTAATTTTTTGGCGCATAGACTAGCGCACGCGTCCGTTTCTAAAGGCAATTTTGCCTTCTGCTCTTTTGACCATTCTCATTACTTGAGAATGGATTTCGGCCAATTAGATTTTTGTTGTAAAGGCTGGTTTTTCTCCATTTTGGAGAAAGAAGTTGTTGTACCTAACTTTTGTCCCCTTTAA

Coding sequence (CDS)

ATGAGTAAAATGAGCTACTACCAGAATCAGAGTAAGTACCAGGAGAAAAGCTCAGCGAAGAACCTCCAGAGTCATGGGTGTTGGAATCCGTCGTCCGTTGGCCATTGGAAGATGAACTCGGACGCAACCTGGTTCGACTCCTCAAATTCGGGGGGAGTGGGATGGATCATTCGTGACTCATCCGGTTCTTTGATCGAAGCAGGGTGCAAGATAGTTGAGGCGAAAGATGAAATAAAAAATTTGGAAGCCATAGCCATTTTAGATGGTCTCAAGCATTTATCAGAAAGCTACAGATCGTACTCGGAGATGGATAAGCCTCCGTTGGTGGTGGAATCGAAGTTTTCAAGCTCCTTAACCTTGAATCTGAAGATTGCTCGGAAATCTCGCTGA

Protein sequence

MSKMSYYQNQSKYQEKSSAKNLQSHGCWNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLSESYRSYSEMDKPPLVVESKFSSSLTLNLKIARKSR

Homology

[Close]

BLAST of Lcy06g005380 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 38/98 (38.78%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1   MSKMSYYQNQSKYQEKSSA----KNLQSHGCWNPSSVGHWKMNSDATWFDSSNSGGVGWI 60
           + +++ +  +S YQ ++S     K L +   W P  +  W +N+DA+W DS++ GG+GWI
Sbjct: 40  IQQLTKFVTESSYQSETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWI 99

Query: 61  IRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLS 95
           IR   G ++ AG + VEA + +K LEA AIL+GL++L+
Sbjct: 100 IRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLT 137

[Close]

BLAST of Lcy06g005380 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.7e-09
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 28  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAIL 87
           W P +   WK+N+DA W   +N+GG+GWI+RD  G +I+A C+I+  +  I  LE +AI 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 88  DGLKHLSESY-RSYSEMDKPPLVVES 113
           +GL+ + + + R   +    P+ +ES
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLES 164

[Close]

BLAST of Lcy06g005380 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.5e-09
Identity = 28/70 (40.00%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 28  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAIL 87
           W P +   WK+N++A W   +N+GG+GWI+RD  G +I+A C+I+ A+  I  LE +AI 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 88  DGLKHLSESY 98
           +GL+ + + +
Sbjct: 139 EGLRAIRQEH 148

[Close]

BLAST of Lcy06g005380 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.5e-09
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 28  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAIL 87
           W P +   WK+N+DA W   +N+ G+GWI+RD  G +I+ GC+I+ A+  I  LE +AI 
Sbjct: 255 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAIC 314

Query: 88  DGLKHLSESY 98
           +GL+ + + +
Sbjct: 315 EGLRAIRQEH 324

[Close]

BLAST of Lcy06g005380 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.5e-09
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 28  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAIL 87
           W P +   WK+N+DA W   +N+ G+GWI+RD  G +I+ GC+I+ A+  I  LE +AI 
Sbjct: 220 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAIC 279

Query: 88  DGLKHLSESY 98
           +GL+ + + +
Sbjct: 280 EGLRAIRQEH 289

[Close]

BLAST of Lcy06g005380 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-09
Identity = 38/98 (38.78%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1   MSKMSYYQNQSKYQEKSSA----KNLQSHGCWNPSSVGHWKMNSDATWFDSSNSGGVGWI 60
           + +++ +  +S YQ ++S     K L +   W P  +  W +N+DA+W DS++ GG+GWI
Sbjct: 40  IQQLTKFVTESSYQSETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWI 99

Query: 61  IRDSSGSLIEAGCKIVEAKDEIKNLEAIAILDGLKHLS 95
           IR   G ++ AG + VEA + +K LEA AIL+GL++L+
Sbjct: 100 IRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLT 137

[Close]

BLAST of Lcy06g005380 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 5.5e-09
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 28  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAIL 87
           W P +   WK+N+DA W   +N+GG+GWI+RD  G +I+A C+I+  +  I  LE +AI 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 88  DGLKHLSESY-RSYSEMDKPPLVVES 113
           +GL+ + + + R   +    P+ +ES
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLES 164

[Close]

BLAST of Lcy06g005380 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 71.2 bits (173), Expect = 7.2e-09
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 28  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAIL 87
           W P +   WK+N+DA W   +N+ G+GWI+RD  G +I+ GC+I+ A+  I  LE +AI 
Sbjct: 255 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAIC 314

Query: 88  DGLKHLSESY 98
           +GL+ + + +
Sbjct: 315 EGLRAIRQEH 324

[Close]

BLAST of Lcy06g005380 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 71.2 bits (173), Expect = 7.2e-09
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 28  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAIL 87
           W P +   WK+N+DA W   +N+ G+GWI+RD  G +I+ GC+I+ A+  I  LE +AI 
Sbjct: 220 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAIC 279

Query: 88  DGLKHLSESY 98
           +GL+ + + +
Sbjct: 280 EGLRAIRQEH 289

[Close]

BLAST of Lcy06g005380 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 71.2 bits (173), Expect = 7.2e-09
Identity = 28/70 (40.00%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 28  WNPSSVGHWKMNSDATWFDSSNSGGVGWIIRDSSGSLIEAGCKIVEAKDEIKNLEAIAIL 87
           W P +   WK+N++A W   +N+GG+GWI+RD  G +I+A C+I+ A+  I  LE +AI 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 88  DGLKHLSESY 98
           +GL+ + + +
Sbjct: 139 EGLRAIRQEH 148

The following BLAST results are available for this feature:

BLAST of Lcy06g005380 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g005380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	1.6e-09	38.78	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DSV1	2.7e-09	37.21	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CP26	3.5e-09	40.00	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DL64	3.5e-09	40.00	uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DQC9	3.5e-09	40.00	uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Lcy06g005380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	3.2e-09	38.78	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022156777.1	5.5e-09	37.21	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022154990.1	7.2e-09	40.00	uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]	[more]
XP_022154991.1	7.2e-09	40.00	uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]	[more]
XP_022143535.1	7.2e-09	40.00	uncharacterized protein LOC111013412 [Momordica charantia]	[more]

BLAST of Lcy06g005380 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 64..84
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 39..93 e-value: 1.5E-7 score: 31.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g005380.1	Lcy06g005380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity