Lcy04g021400 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g021400
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	30S ribosomal protein S5
Location	Chr04: 52677379 .. 52679584 (-)
RNA-Seq Expression	Lcy04g021400
Synteny	Lcy04g021400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCAACTCTCGTCCCAATTTCCTCTCTTTCCTTACGCTCTTCTCCCTCCCACCGCCTCCCAATTCCGCCATTGAAGCCTTTCTCCGTCCTCCACTCCGCCCTATCCATATCCCCAATCTCCTCTTCCTCCTCCTCCTCGATTCTCTCTGCCACTCGTGCCAAATCCTCAGACATCGACACCACCTTCTTCGACACCGTCAATCCCGAAGAAGACGTCGTCTACGACCCCCCTGAAGTCCCCGAAGGCTTCGTCGCCCCTCCCTCCTTCGACGAGGGTCCATTGGAATCCGAGGACGAAATTGCCGCCGCTTACGAGGAGATCTATGGCCCGGCTTACAGTGGAATCACTGTTCTCGGAAATGACATTCATGTAATGGATTCTAAGGTCAAGAAGGTGGGCGGATTCGGCTCGAAGGCCAAGAAGGACAAGCCGCGGGATGGATTTGATGAGCGGGTTGTGCAAGTTAGGAGAGTCACTAAAGTGGTTAAAGGTGGGAAACAGCTGCATTTTAGGGCAATTGTTGTTGTGGGTGACAAACAGGGCCAGGTCGGTGTTGGTGTTGGTAAAGCTAAGGAGGTCATTGCTGCTGTTCAGAAATCGGCCGTCAATGCTCGCCGGAATATTGTCACCGTTCCCATGACCAAGTACCTTACATTTCCTCACAGGTTCGTGAGTTTGCTCATTTCGAAATTCTAATACCACTTTAATCTGAGCAATGCTGTATAGTACTGATAAGAGTTTATGGAGTAGCTCTTTTGTAAGGCTTTGGTTTGCTGATAATGGGAATGCTGGTCAATTAGGAACATGGGATTTAAAGAAGAGTAGAACTGGATGACTATATTTACTTTTAGGAACACTTGACTTCACTGTCAATTGATTACTCCTATCCAGTGTGTTGTCAGTTTAGTGGATTTTCTGCAAGTCCGATCCTTGCTTCAACAGTTCAATGGCTTTGTTTTAAGTTAGTTAATACGAGGTCTGTAGTCTGTAGGCAATTTGAACTTTGAATCCTCGTTGAAAGTTGGTCATTGGAGGTAATTGCTGCTTCCGGAGCTGCATTTTGTTGATGTTTTTAGTTGTCTTTTGTAAATGACAAGGTATATTTCCAAGTTTTGTCTAGAGTCTGCTACAATTAGTCCATGTTTGGGAGTGATTTTAAAAGGATTAAAATCACTTTTGTCATGTTTTTAATAGGTCAAAATCAATTTTGATGATATGAAAATCACGTTTAAAAGTGTAAAATCAAACATGACATTGATTTTGAATAATTAAAAGTCTGTTTCAAGGTGATTTCAACCTAACACAAGTGGTTTTTAGCCATTTTAAAATCACTCCCAAACATGTTTTTAGACTAGGGAGAAGTTCATGTCCTGATTGAGTTTCCAGTGTTTTTCTATGGCTGAAAGAATTAGCACCTAAAAAGCACCTTGATAATGAGAGAGATATAGACTGCTTTCCTTTTAGTTGCAAATACAGAGTTCATATAGCAGATTCCAGGAAGCTAGAATCCAAAGCAAACTCAATTTCAGTCAGGAAATCATAGTTTGATTCTCCATTTTTTCACTGTGAATGCTATTAAAGTAATATTTCAGTCATATTCACATGTTGGGTAGCCGTGTGTTACTGCAAATGTTGGCTGAGTAAGGAAAATTGTAGGTCGGAGGGAGATTATGGAGCAGCAAAAGTAATGCTGAGACCTGCCTCTCCCGGTACTGGTGTGATTGCTGGTGGAGCAGTGAGAATCGTCCTCGAAATGGCGGGTGTCGAGAATGCGTTAGGGAAGCAACTTGGAAGTAACAATGCCCTCAACAATGCCAGAGCGACGGTTGTCGCCGTGCAGAAGATGAAACAGTTCCGGGAAGTCGCACAGGAGCGTGGCATCCCCATGGAAGAGTTGTGGAAGTGAGGAGGGAAAGGTTGAGAGTAATTTTCTTGTCTCATTTTTCCTTTGACGTATATTAGTGCATCTATTCTTGTAACTCGATGTTGTAAAAACGGCAGCCAGGCTTCATTCCTTTGTTGTTTTTTTTTTTGGGCCTTTTTCCTCTTATAACATAAGTGGACATAGCCTTGAAAAGTAAGTAAATTTGTCTGTTCCTTCACTATGAAGAAGGCTTTTATAACAATTTTAGGATGTTGAAGAACACTGTTCTAACTTTGGTGGGGGCAGGGCAGAGTCTGGGCTATCTGAAAAAAC

mRNA sequence

ATGGCTTCTTCAACTCTCGTCCCAATTTCCTCTCTTTCCTTACGCTCTTCTCCCTCCCACCGCCTCCCAATTCCGCCATTGAAGCCTTTCTCCGTCCTCCACTCCGCCCTATCCATATCCCCAATCTCCTCTTCCTCCTCCTCCTCGATTCTCTCTGCCACTCGTGCCAAATCCTCAGACATCGACACCACCTTCTTCGACACCGTCAATCCCGAAGAAGACGTCGTCTACGACCCCCCTGAAGTCCCCGAAGGCTTCGTCGCCCCTCCCTCCTTCGACGAGGGTCCATTGGAATCCGAGGACGAAATTGCCGCCGCTTACGAGGAGATCTATGGCCCGGCTTACAGTGGAATCACTGTTCTCGGAAATGACATTCATGTAATGGATTCTAAGGTCAAGAAGGTGGGCGGATTCGGCTCGAAGGCCAAGAAGGACAAGCCGCGGGATGGATTTGATGAGCGGGTTGTGCAAGTTAGGAGAGTCACTAAAGTGGTTAAAGGTGGGAAACAGCTGCATTTTAGGGCAATTGTTGTTGTGGGTGACAAACAGGGCCAGGTCGGTGTTGGTGTTGGTAAAGCTAAGGAGGTCATTGCTGCTGTTCAGAAATCGGCCGTCAATGCTCGCCGGAATATTGTCACCGTTCCCATGACCAAGTACCTTACATTTCCTCACAGGTCGGAGGGAGATTATGGAGCAGCAAAAGTAATGCTGAGACCTGCCTCTCCCGGTACTGGTGTGATTGCTGGTGGAGCAGTGAGAATCGTCCTCGAAATGGCGGGTGTCGAGAATGCGTTAGGGAAGCAACTTGGAAGTAACAATGCCCTCAACAATGCCAGAGCGACGGTTGTCGCCGTGCAGAAGATGAAACAGTTCCGGGAAGTCGCACAGGAGCGTGGCATCCCCATGGAAGAGTTGTGGAAGTGAGGAGGGAAAGGTTGAGAGTAATTTTCTTGTCTCATTTTTCCTTTGACGTATATTAGTGCATCTATTCTTGTAACTCGATGTTGTAAAAACGGCAGCCAGGCTTCATTCCTTTGTTGTTTTTTTTTTTGGGCCTTTTTCCTCTTATAACATAAGTGGACATAGCCTTGAAAAGTAAGTAAATTTGTCTGTTCCTTCACTATGAAGAAGGCTTTTATAACAATTTTAGGATGTTGAAGAACACTGTTCTAACTTTGGTGGGGGCAGGGCAGAGTCTGGGCTATCTGAAAAAAC

Coding sequence (CDS)

ATGGCTTCTTCAACTCTCGTCCCAATTTCCTCTCTTTCCTTACGCTCTTCTCCCTCCCACCGCCTCCCAATTCCGCCATTGAAGCCTTTCTCCGTCCTCCACTCCGCCCTATCCATATCCCCAATCTCCTCTTCCTCCTCCTCCTCGATTCTCTCTGCCACTCGTGCCAAATCCTCAGACATCGACACCACCTTCTTCGACACCGTCAATCCCGAAGAAGACGTCGTCTACGACCCCCCTGAAGTCCCCGAAGGCTTCGTCGCCCCTCCCTCCTTCGACGAGGGTCCATTGGAATCCGAGGACGAAATTGCCGCCGCTTACGAGGAGATCTATGGCCCGGCTTACAGTGGAATCACTGTTCTCGGAAATGACATTCATGTAATGGATTCTAAGGTCAAGAAGGTGGGCGGATTCGGCTCGAAGGCCAAGAAGGACAAGCCGCGGGATGGATTTGATGAGCGGGTTGTGCAAGTTAGGAGAGTCACTAAAGTGGTTAAAGGTGGGAAACAGCTGCATTTTAGGGCAATTGTTGTTGTGGGTGACAAACAGGGCCAGGTCGGTGTTGGTGTTGGTAAAGCTAAGGAGGTCATTGCTGCTGTTCAGAAATCGGCCGTCAATGCTCGCCGGAATATTGTCACCGTTCCCATGACCAAGTACCTTACATTTCCTCACAGGTCGGAGGGAGATTATGGAGCAGCAAAAGTAATGCTGAGACCTGCCTCTCCCGGTACTGGTGTGATTGCTGGTGGAGCAGTGAGAATCGTCCTCGAAATGGCGGGTGTCGAGAATGCGTTAGGGAAGCAACTTGGAAGTAACAATGCCCTCAACAATGCCAGAGCGACGGTTGTCGCCGTGCAGAAGATGAAACAGTTCCGGGAAGTCGCACAGGAGCGTGGCATCCCCATGGAAGAGTTGTGGAAGTGA

Protein sequence

MASSTLVPISSLSLRSSPSHRLPIPPLKPFSVLHSALSISPISSSSSSSILSATRAKSSDIDTTFFDTVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEEIYGPAYSGITVLGNDIHVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERGIPMEELWK

Homology

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BLAST of Lcy04g021400 vs. ExPASy Swiss-Prot
Match: P93014 (30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps5 PE=2 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 2.0e-105
Identity = 218/311 (70.10%), Postives = 249/311 (80.06%), Query Frame = 0


Query: 3   SSTLVPISSLSLRSSPSHRLPIPPLKPFSVLHSALSISPISSSS----SSSILSATRAKS 62
           +S L  +SSLSL +  S           S++ S+ + S +S SS      S L+  +A S
Sbjct: 4   ASALSSLSSLSLHTRTS-----------SLISSSSTKSIVSFSSFLNRRFSSLTLVKASS 63

Query: 63  SDIDTTFFDTVNPE--EDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEEIYGPAYS 122
           +D +T FF+   PE   +VV+DPP  PEGFV+PP FDEG  E+E+EIA A+EE+YGPAYS
Sbjct: 64  TDTETIFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYGPAYS 123

Query: 123 GITVLGNDIHVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAI 182
           G ++LG DI+VMDSK KK  G G K KKDK RDGF+ERVVQVRRVTKVVKGGKQL FRAI
Sbjct: 124 GESMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAI 183

Query: 183 VVVGDKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVM 242
           VVVGDKQG VGVG  KAKEV+AAVQKSA++ARRNIV VPMTKY TFPHRSEGDYGAAKVM
Sbjct: 184 VVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVM 243

Query: 243 LRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQ 302
           LRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ AVQ+M+QFR+VAQ
Sbjct: 244 LRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQQMRQFRDVAQ 303

Query: 303 ERGIPMEELWK 308
           ERGIPMEELWK
Sbjct: 304 ERGIPMEELWK 303

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BLAST of Lcy04g021400 vs. ExPASy Swiss-Prot
Match: Q9ST69 (30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps5 PE=1 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.9e-104
Identity = 207/310 (66.77%), Postives = 252/310 (81.29%), Query Frame = 0


Query: 1   MASSTLVPISSLSLRSSPSHRLPIPPLKPFSVLHSALSISPISSSSSSSILSATR---AK 60
           MA++     S+ SL ++   R+P+ P    ++L  + S  P+  S SS+    T     K
Sbjct: 1   MATTATTTPSATSL-TTLHRRIPLFPTTT-TLLSLSSSSKPLFLSLSSTRSFPTHLYCIK 60

Query: 61  SSDIDTTFFDTVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEEIYGPAYSG 120
             DID TFF+  NP+E++ +DPPE PEG++ P + DE P ESE+EIA AYEE+YG AYSG
Sbjct: 61  KDDIDITFFEQDNPDEEITFDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSG 120

Query: 121 ITVLGNDIHVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIV 180
            ++LGND++ MDSK+KK  GFGSK+KK+K RDGF+E VVQVRRVTKVVKGGK + FRAIV
Sbjct: 121 ESLLGNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIV 180

Query: 181 VVGDKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVML 240
           VVGDK+GQVGVGVGKAKEV++AVQK+AV+ARRNI+TVPMTKYLTFPHR+E DYGAA+VML
Sbjct: 181 VVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVML 240

Query: 241 RPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQE 300
           RPA+PGTGVIAGGAVR VLEMAGVENALGKQLGSNNALNNARAT+VAVQ M+QF +VA++
Sbjct: 241 RPAAPGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVARD 300

Query: 301 RGIPMEELWK 308
           RGIPMEELWK
Sbjct: 301 RGIPMEELWK 308

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BLAST of Lcy04g021400 vs. ExPASy Swiss-Prot
Match: Q1XDJ0 (30S ribosomal protein S5, chloroplastic OS=Pyropia yezoensis OX=2788 GN=rps5 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 6.6e-48
Identity = 99/167 (59.28%), Postives = 135/167 (80.84%), Query Frame = 0


Query: 141 KAKKDKPRD-GFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVIAA 200
           K  K K +D G++ERVVQV+RVTKVVKGGK+L FR I+V+G++QGQVGVGVGKA +VI A
Sbjct: 6   KQSKGKDKDSGWEERVVQVKRVTKVVKGGKKLSFRVILVIGNEQGQVGVGVGKASDVIGA 65

Query: 201 VQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMA 260
           V+K   +A++++VTVP+TK  + PH   G  GAAKV+LRP++PG+GVIAGG+VR VLE++
Sbjct: 66  VKKGVTDAKKHLVTVPLTKSNSIPHPINGISGAAKVILRPSAPGSGVIAGGSVRTVLELS 125

Query: 261 GVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERGIPMEELW 307
           GV+N L KQLGSNN LNNARA +  + +++ F E A++RG+P+E L+
Sbjct: 126 GVQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPIESLY 172

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BLAST of Lcy04g021400 vs. ExPASy Swiss-Prot
Match: P51298 (30S ribosomal protein S5, chloroplastic OS=Porphyra purpurea OX=2787 GN=rps5 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.9e-47
Identity = 99/167 (59.28%), Postives = 135/167 (80.84%), Query Frame = 0


Query: 141 KAKKDKPRD-GFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVIAA 200
           K  K K +D G++ERVVQV+RVTKVVKGGK+L FR I+VVG++QGQVGVGVGKA +VI A
Sbjct: 6   KQGKSKEKDNGWEERVVQVKRVTKVVKGGKKLSFRVILVVGNEQGQVGVGVGKASDVIGA 65

Query: 201 VQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMA 260
           V+K   +A++++VTVP+TK  + PH   G  GAA+V+LRP++PG+GVIAGG+VR VLE++
Sbjct: 66  VKKGVTDAKKHLVTVPLTKSNSIPHPINGISGAAQVILRPSAPGSGVIAGGSVRTVLELS 125

Query: 261 GVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERGIPMEELW 307
           GV+N L KQLGSNN LNNARA +  + +++ F E A++RG+P+E L+
Sbjct: 126 GVQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPIENLY 172

[Close]

BLAST of Lcy04g021400 vs. ExPASy Swiss-Prot
Match: B1WQS7 (30S ribosomal protein S5 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rpsE PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 5.6e-47
Identity = 98/167 (58.68%), Postives = 134/167 (80.24%), Query Frame = 0


Query: 141 KAKKDKPRD-GFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVIAA 200
           K+ +DK +D  + ERV+Q+RRV+KVVKGGK+L FRAIVVVG+++GQVGVGVGKA +VI A
Sbjct: 6   KSNRDKSKDSNWQERVIQIRRVSKVVKGGKKLSFRAIVVVGNEKGQVGVGVGKAGDVIGA 65

Query: 201 VQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMA 260
           V+K   + ++ ++ V +TK  +  H ++G  G AKV++RPA+PGTGVIAGGAVR VLE+A
Sbjct: 66  VRKGVADGKKQLIDVSLTKSSSITHVAKGVSGGAKVIVRPAAPGTGVIAGGAVRTVLELA 125

Query: 261 GVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERGIPMEELW 307
           G++N L KQLGSNN LNNARA + A++ ++ F EVAQERG+P+E L+
Sbjct: 126 GLKNILAKQLGSNNPLNNARAVINALEGLRTFSEVAQERGVPLEHLY 172

[Close]

BLAST of Lcy04g021400 vs. ExPASy TrEMBL
Match: A0A0A0KK69 (S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517420 PE=3 SV=1)

HSP 1 Score: 535.8 bits (1379), Expect = 1.2e-148
Identity = 282/307 (91.86%), Postives = 295/307 (96.09%), Query Frame = 0


Query: 1   MASSTLVPISSLSLRSSPSHRLPIPPLKPFSVLHSALSISPISSSSSSSILSATRAKSSD 60
           MASSTLVPISS+SLRSSPSHRL IP  KPF +LHS + + PISSSSSSSILSATRAKSSD
Sbjct: 47  MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 106

Query: 61  IDTTFFDTVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEEIYGPAYSGITV 120
           IDTTFFD VNP+ED+VYDPPEVPEGFV PPSFDEGP+E+E+EIAA YEEIYGPAYSG++V
Sbjct: 107 IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 166

Query: 121 LGNDIHVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDI+VMDSKVKK GGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 167 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 226

Query: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DKQGQVGVGVGKAKEVI AVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 227 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 286

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFR+VAQERGI
Sbjct: 287 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 346

Query: 301 PMEELWK 308
           PMEELWK
Sbjct: 347 PMEELWK 353

[Close]

BLAST of Lcy04g021400 vs. ExPASy TrEMBL
Match: A0A6J1CLD7 (30S ribosomal protein S5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012511 PE=3 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 2.6e-148
Identity = 285/307 (92.83%), Postives = 297/307 (96.74%), Query Frame = 0


Query: 1   MASSTLVPISSLSLRSSPSHRLPIPPLKPFSVLHSALSISPISSSSSSSILSATRAKSSD 60
           MASSTLVPISSLSLRSSPSHRLPI PLKPF+VLHSALS++PI   SSSSIL+  RAKSSD
Sbjct: 1   MASSTLVPISSLSLRSSPSHRLPILPLKPFTVLHSALSLAPI---SSSSILAPIRAKSSD 60

Query: 61  IDTTFFDTVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEEIYGPAYSGITV 120
           IDTTFFD V PE+DVVYDPPEVPEGFVAPPSFDEGPLE+E+EIAAAYEEIYGPAYSG++V
Sbjct: 61  IDTTFFDNVTPEDDVVYDPPEVPEGFVAPPSFDEGPLETEEEIAAAYEEIYGPAYSGVSV 120

Query: 121 LGNDIHVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDIHVMDSKVKKVGGFGSKAKKDK RDGF+ERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIHVMDSKVKKVGGFGSKAKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DKQGQVGVGVGKAKEVI+AVQKSAVNARRNIVTVPMTKYLTFPHRS+GDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVISAVQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKVMLRPA 240

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATV AVQKMKQFREVAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVAAVQKMKQFREVAQERGI 300

Query: 301 PMEELWK 308
           PMEELWK
Sbjct: 301 PMEELWK 304

[Close]

BLAST of Lcy04g021400 vs. ExPASy TrEMBL
Match: A0A5D3CMJ7 (30S ribosomal protein S5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007540 PE=3 SV=1)

HSP 1 Score: 533.5 bits (1373), Expect = 5.9e-148
Identity = 281/307 (91.53%), Postives = 296/307 (96.42%), Query Frame = 0


Query: 1   MASSTLVPISSLSLRSSPSHRLPIPPLKPFSVLHSALSISPISSSSSSSILSATRAKSSD 60
           MASSTLVPISS+SLRSSPSHRL IP  KPF +LHS +S+  ISSSSSSSILSATRAKSSD
Sbjct: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSPVSVLSISSSSSSSILSATRAKSSD 60

Query: 61  IDTTFFDTVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEEIYGPAYSGITV 120
           IDTTFFD VNP+ED+ +DPPEVPEGFV PPSFDEGP+E+E+EIAAAYEEIYGPAYSG++V
Sbjct: 61  IDTTFFDNVNPDEDIAFDPPEVPEGFVPPPSFDEGPMETEEEIAAAYEEIYGPAYSGVSV 120

Query: 121 LGNDIHVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDI+VMDSKVKK GGFGSKAKK+KPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKAGGFGSKAKKEKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFR+VAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 301 PMEELWK 308
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]

BLAST of Lcy04g021400 vs. ExPASy TrEMBL
Match: A0A1S3AZA3 (30S ribosomal protein S5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484514 PE=3 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 2.2e-147
Identity = 280/307 (91.21%), Postives = 295/307 (96.09%), Query Frame = 0


Query: 1   MASSTLVPISSLSLRSSPSHRLPIPPLKPFSVLHSALSISPISSSSSSSILSATRAKSSD 60
           MASSTLVPISS+SLRSSPSHRL IP  KPF +LHS +S+  ISSSSSSSILSATRAKSSD
Sbjct: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSPVSVLSISSSSSSSILSATRAKSSD 60

Query: 61  IDTTFFDTVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEEIYGPAYSGITV 120
            DTTFFD VNP+ED+ +DPPEVPEGFV PPSFDEGP+E+E+EIAAAYEEIYGPAYSG++V
Sbjct: 61  TDTTFFDNVNPDEDIAFDPPEVPEGFVPPPSFDEGPMETEEEIAAAYEEIYGPAYSGVSV 120

Query: 121 LGNDIHVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDI+VMDSKVKK GGFGSKAKK+KPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKAGGFGSKAKKEKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFR+VAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 301 PMEELWK 308
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]

BLAST of Lcy04g021400 vs. ExPASy TrEMBL
Match: A0A6J1IU44 (30S ribosomal protein S5, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111478601 PE=3 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 2.3e-144
Identity = 276/307 (89.90%), Postives = 295/307 (96.09%), Query Frame = 0


Query: 1   MASSTLVPISSLSLRSSPSHRLPIPPLKPFSVLHSALSISPISSSSSSSILSATRAKSSD 60
           MASS +VPISSLSLRSSPS+ LPIPPLKPF+VLHSA+S+ PI   SSS ILSA RAK SD
Sbjct: 1   MASSIVVPISSLSLRSSPSYCLPIPPLKPFTVLHSAVSVPPI---SSSLILSAARAKPSD 60

Query: 61  IDTTFFDTVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEEIYGPAYSGITV 120
           IDT FF++VNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEE+YGPAYSG++V
Sbjct: 61  IDTIFFESVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEELYGPAYSGVSV 120

Query: 121 LGNDIHVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDI+VMDSK+KKVGGFGSKA+K+K RDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKMKKVGGFGSKARKEKARDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DK+GQVGVGVGKAKEVI+AVQKSA+NARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKKGQVGVGVGKAKEVISAVQKSAINARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAV KMKQFR+VA+ERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVMKMKQFRDVARERGI 300

Query: 301 PMEELWK 308
           PMEELWK
Sbjct: 301 PMEELWK 304

[Close]

BLAST of Lcy04g021400 vs. NCBI nr
Match: XP_038883765.1 (30S ribosomal protein S5, chloroplastic [Benincasa hispida])

HSP 1 Score: 542.7 bits (1397), Expect = 2.0e-150
Identity = 289/307 (94.14%), Postives = 297/307 (96.74%), Query Frame = 0


Query: 1   MASSTLVPISSLSLRSSPSHRLPIPPLKPFSVLHSALSISPISSSSSSSILSATRAKSSD 60
           MASSTLVPISSLSLRSSPSHRLPIP  KPF+VLHSA+S+ PISSSSSS ILSAT  KSSD
Sbjct: 1   MASSTLVPISSLSLRSSPSHRLPIPLFKPFTVLHSAVSVPPISSSSSSFILSATPPKSSD 60

Query: 61  IDTTFFDTVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEEIYGPAYSGITV 120
           IDTTFFD V P+EDVVYDPPEVPEGFV PPSFDEGP ESEDEIAAAYEEIYGPAYSG++V
Sbjct: 61  IDTTFFDNVTPQEDVVYDPPEVPEGFVPPPSFDEGPPESEDEIAAAYEEIYGPAYSGVSV 120

Query: 121 LGNDIHVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDI+VMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFR+VAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 301 PMEELWK 308
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]

BLAST of Lcy04g021400 vs. NCBI nr
Match: XP_004134699.1 (30S ribosomal protein S5, chloroplastic [Cucumis sativus] >XP_011658214.1 30S ribosomal protein S5, chloroplastic [Cucumis sativus] >KAE8647691.1 hypothetical protein Csa_004214 [Cucumis sativus])

HSP 1 Score: 535.8 bits (1379), Expect = 2.4e-148
Identity = 282/307 (91.86%), Postives = 295/307 (96.09%), Query Frame = 0


Query: 1   MASSTLVPISSLSLRSSPSHRLPIPPLKPFSVLHSALSISPISSSSSSSILSATRAKSSD 60
           MASSTLVPISS+SLRSSPSHRL IP  KPF +LHS + + PISSSSSSSILSATRAKSSD
Sbjct: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSTVFLLPISSSSSSSILSATRAKSSD 60

Query: 61  IDTTFFDTVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEEIYGPAYSGITV 120
           IDTTFFD VNP+ED+VYDPPEVPEGFV PPSFDEGP+E+E+EIAA YEEIYGPAYSG++V
Sbjct: 61  IDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVSV 120

Query: 121 LGNDIHVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDI+VMDSKVKK GGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DKQGQVGVGVGKAKEVI AVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFR+VAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 301 PMEELWK 308
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]

BLAST of Lcy04g021400 vs. NCBI nr
Match: XP_022142374.1 (30S ribosomal protein S5, chloroplastic [Momordica charantia])

HSP 1 Score: 534.6 bits (1376), Expect = 5.4e-148
Identity = 285/307 (92.83%), Postives = 297/307 (96.74%), Query Frame = 0


Query: 1   MASSTLVPISSLSLRSSPSHRLPIPPLKPFSVLHSALSISPISSSSSSSILSATRAKSSD 60
           MASSTLVPISSLSLRSSPSHRLPI PLKPF+VLHSALS++PI   SSSSIL+  RAKSSD
Sbjct: 1   MASSTLVPISSLSLRSSPSHRLPILPLKPFTVLHSALSLAPI---SSSSILAPIRAKSSD 60

Query: 61  IDTTFFDTVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEEIYGPAYSGITV 120
           IDTTFFD V PE+DVVYDPPEVPEGFVAPPSFDEGPLE+E+EIAAAYEEIYGPAYSG++V
Sbjct: 61  IDTTFFDNVTPEDDVVYDPPEVPEGFVAPPSFDEGPLETEEEIAAAYEEIYGPAYSGVSV 120

Query: 121 LGNDIHVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDIHVMDSKVKKVGGFGSKAKKDK RDGF+ERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIHVMDSKVKKVGGFGSKAKKDKLRDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DKQGQVGVGVGKAKEVI+AVQKSAVNARRNIVTVPMTKYLTFPHRS+GDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVISAVQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKVMLRPA 240

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATV AVQKMKQFREVAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVAAVQKMKQFREVAQERGI 300

Query: 301 PMEELWK 308
           PMEELWK
Sbjct: 301 PMEELWK 304

[Close]

BLAST of Lcy04g021400 vs. NCBI nr
Match: KAA0052681.1 (30S ribosomal protein S5 [Cucumis melo var. makuwa] >TYK13143.1 30S ribosomal protein S5 [Cucumis melo var. makuwa])

HSP 1 Score: 533.5 bits (1373), Expect = 1.2e-147
Identity = 281/307 (91.53%), Postives = 296/307 (96.42%), Query Frame = 0


Query: 1   MASSTLVPISSLSLRSSPSHRLPIPPLKPFSVLHSALSISPISSSSSSSILSATRAKSSD 60
           MASSTLVPISS+SLRSSPSHRL IP  KPF +LHS +S+  ISSSSSSSILSATRAKSSD
Sbjct: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSPVSVLSISSSSSSSILSATRAKSSD 60

Query: 61  IDTTFFDTVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEEIYGPAYSGITV 120
           IDTTFFD VNP+ED+ +DPPEVPEGFV PPSFDEGP+E+E+EIAAAYEEIYGPAYSG++V
Sbjct: 61  IDTTFFDNVNPDEDIAFDPPEVPEGFVPPPSFDEGPMETEEEIAAAYEEIYGPAYSGVSV 120

Query: 121 LGNDIHVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDI+VMDSKVKK GGFGSKAKK+KPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKAGGFGSKAKKEKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFR+VAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 301 PMEELWK 308
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]

BLAST of Lcy04g021400 vs. NCBI nr
Match: XP_008439845.1 (PREDICTED: 30S ribosomal protein S5, chloroplastic [Cucumis melo] >XP_008439846.1 PREDICTED: 30S ribosomal protein S5, chloroplastic [Cucumis melo])

HSP 1 Score: 531.6 bits (1368), Expect = 4.6e-147
Identity = 280/307 (91.21%), Postives = 295/307 (96.09%), Query Frame = 0


Query: 1   MASSTLVPISSLSLRSSPSHRLPIPPLKPFSVLHSALSISPISSSSSSSILSATRAKSSD 60
           MASSTLVPISS+SLRSSPSHRL IP  KPF +LHS +S+  ISSSSSSSILSATRAKSSD
Sbjct: 1   MASSTLVPISSISLRSSPSHRLSIPLFKPFPLLHSPVSVLSISSSSSSSILSATRAKSSD 60

Query: 61  IDTTFFDTVNPEEDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEEIYGPAYSGITV 120
            DTTFFD VNP+ED+ +DPPEVPEGFV PPSFDEGP+E+E+EIAAAYEEIYGPAYSG++V
Sbjct: 61  TDTTFFDNVNPDEDIAFDPPEVPEGFVPPPSFDEGPMETEEEIAAAYEEIYGPAYSGVSV 120

Query: 121 LGNDIHVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180
           LGNDI+VMDSKVKK GGFGSKAKK+KPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG
Sbjct: 121 LGNDIYVMDSKVKKAGGFGSKAKKEKPRDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVG 180

Query: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240
           DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA
Sbjct: 181 DKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPA 240

Query: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERGI 300
           SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFR+VAQERGI
Sbjct: 241 SPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDVAQERGI 300

Query: 301 PMEELWK 308
           PMEELWK
Sbjct: 301 PMEELWK 307

[Close]

BLAST of Lcy04g021400 vs. TAIR 10
Match: AT2G33800.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 383.6 bits (984), Expect = 1.4e-106
Identity = 218/311 (70.10%), Postives = 249/311 (80.06%), Query Frame = 0


Query: 3   SSTLVPISSLSLRSSPSHRLPIPPLKPFSVLHSALSISPISSSS----SSSILSATRAKS 62
           +S L  +SSLSL +  S           S++ S+ + S +S SS      S L+  +A S
Sbjct: 4   ASALSSLSSLSLHTRTS-----------SLISSSSTKSIVSFSSFLNRRFSSLTLVKASS 63

Query: 63  SDIDTTFFDTVNPE--EDVVYDPPEVPEGFVAPPSFDEGPLESEDEIAAAYEEIYGPAYS 122
           +D +T FF+   PE   +VV+DPP  PEGFV+PP FDEG  E+E+EIA A+EE+YGPAYS
Sbjct: 64  TDTETIFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYGPAYS 123

Query: 123 GITVLGNDIHVMDSKVKKVGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFRAI 182
           G ++LG DI+VMDSK KK  G G K KKDK RDGF+ERVVQVRRVTKVVKGGKQL FRAI
Sbjct: 124 GESMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAI 183

Query: 183 VVVGDKQGQVGVGVGKAKEVIAAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVM 242
           VVVGDKQG VGVG  KAKEV+AAVQKSA++ARRNIV VPMTKY TFPHRSEGDYGAAKVM
Sbjct: 184 VVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVM 243

Query: 243 LRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQ 302
           LRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ AVQ+M+QFR+VAQ
Sbjct: 244 LRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQQMRQFRDVAQ 303

Query: 303 ERGIPMEELWK 308
           ERGIPMEELWK
Sbjct: 304 ERGIPMEELWK 303

[Close]

BLAST of Lcy04g021400 vs. TAIR 10
Match: AT1G64880.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 79.3 bits (194), Expect = 5.8e-15
Identity = 51/159 (32.08%), Postives = 88/159 (55.35%), Query Frame = 0


Query: 143 KKDKP--RDGFDERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVIAAV 202
           KK +P  R G+D  V+ V++V KV KGG+   + A++V G+ +G +G    KA+   +A+
Sbjct: 348 KKRQPLYRKGYDVHVIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAM 407

Query: 203 QKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAG 262
           QK+     +N+  V   +  T  H  +  Y   K+ L PA   TG+ AG  V+ +L +AG
Sbjct: 408 QKAYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAG 467

Query: 263 VENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERG 300
            +N   K +GS N+ N  +A + A+  ++  ++V ++ G
Sbjct: 468 FKNIKSKVIGSRNSYNTVKAVLKALNAVETPKDVQEKFG 506

[Close]

BLAST of Lcy04g021400 vs. TAIR 10
Match: AT1G58983.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 69.7 bits (169), Expect = 4.6e-12
Identity = 47/147 (31.97%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 153 ERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVIAAVQKSAVNARRNIV 212
           + V+++  V K  + G++  F+A VVVGD  G VG+GV  +KEV  A++ + + A+ ++V
Sbjct: 97  DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156

Query: 213 TV-------PMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 272
            V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++  
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216

Query: 273 GKQLGSNNALNN-ARATVVAVQKMKQF 292
               GS   L N  +AT   +QK   F
Sbjct: 217 TSSRGSTKTLGNFVKATFDCLQKTYGF 243

[Close]

BLAST of Lcy04g021400 vs. TAIR 10
Match: AT1G59359.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 69.7 bits (169), Expect = 4.6e-12
Identity = 47/147 (31.97%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 153 ERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVIAAVQKSAVNARRNIV 212
           + V+++  V K  + G++  F+A VVVGD  G VG+GV  +KEV  A++ + + A+ ++V
Sbjct: 97  DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156

Query: 213 TV-------PMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 272
            V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++  
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216

Query: 273 GKQLGSNNALNN-ARATVVAVQKMKQF 292
               GS   L N  +AT   +QK   F
Sbjct: 217 TSSRGSTKTLGNFVKATFDCLQKTYGF 243

[Close]

BLAST of Lcy04g021400 vs. TAIR 10
Match: AT1G58380.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 69.7 bits (169), Expect = 4.6e-12
Identity = 47/147 (31.97%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 153 ERVVQVRRVTKVVKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVIAAVQKSAVNARRNIV 212
           + V+++  V K  + G++  F+A VVVGD  G VG+GV  +KEV  A++ + + A+ ++V
Sbjct: 97  DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156

Query: 213 TV-------PMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 272
            V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++  
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216

Query: 273 GKQLGSNNALNN-ARATVVAVQKMKQF 292
               GS   L N  +AT   +QK   F
Sbjct: 217 TSSRGSTKTLGNFVKATFDCLQKTYGF 243

The following BLAST results are available for this feature:

BLAST of Lcy04g021400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93014	2.0e-105	70.10	30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps5 ...	[more]
Q9ST69	2.9e-104	66.77	30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps5 PE=...	[more]
Q1XDJ0	6.6e-48	59.28	30S ribosomal protein S5, chloroplastic OS=Pyropia yezoensis OX=2788 GN=rps5 PE=...	[more]
P51298	1.9e-47	59.28	30S ribosomal protein S5, chloroplastic OS=Porphyra purpurea OX=2787 GN=rps5 PE=...	[more]
B1WQS7	5.6e-47	58.68	30S ribosomal protein S5 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) O...	[more]

BLAST of Lcy04g021400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK69	1.2e-148	91.86	S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517420 PE=...	[more]
A0A6J1CLD7	2.6e-148	92.83	30S ribosomal protein S5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A5D3CMJ7	5.9e-148	91.53	30S ribosomal protein S5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3AZA3	2.2e-147	91.21	30S ribosomal protein S5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484514 ...	[more]
A0A6J1IU44	2.3e-144	89.90	30S ribosomal protein S5, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Lcy04g021400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883765.1	2.0e-150	94.14	30S ribosomal protein S5, chloroplastic [Benincasa hispida]	[more]
XP_004134699.1	2.4e-148	91.86	30S ribosomal protein S5, chloroplastic [Cucumis sativus] >XP_011658214.1 30S ri...	[more]
XP_022142374.1	5.4e-148	92.83	30S ribosomal protein S5, chloroplastic [Momordica charantia]	[more]
KAA0052681.1	1.2e-147	91.53	30S ribosomal protein S5 [Cucumis melo var. makuwa] >TYK13143.1 30S ribosomal pr...	[more]
XP_008439845.1	4.6e-147	91.21	PREDICTED: 30S ribosomal protein S5, chloroplastic [Cucumis melo] >XP_008439846....	[more]

BLAST of Lcy04g021400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33800.1	1.4e-106	70.10	Ribosomal protein S5 family protein	[more]
AT1G64880.1	5.8e-15	32.08	Ribosomal protein S5 family protein	[more]
AT1G58983.1	4.6e-12	31.97	Ribosomal protein S5 family protein	[more]
AT1G59359.1	4.6e-12	31.97	Ribosomal protein S5 family protein	[more]
AT1G58380.1	4.6e-12	31.97	Ribosomal protein S5 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 151..215 e-value: 2.7E-23 score: 81.7
IPR013810	Ribosomal protein S5, N-terminal	PROSITE	PS50881	S5_DSRBD	coord: 151..214 score: 24.91679
None	No IPR available	GENE3D	3.30.160.20		coord: 146..212 e-value: 3.1E-23 score: 83.4
None	No IPR available	PANTHER	PTHR13718:SF94	30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC	coord: 5..307
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 148..216
IPR005712	Ribosomal protein S5, bacterial-type	TIGRFAM	TIGR01021	TIGR01021	coord: 150..304 e-value: 3.4E-59 score: 197.1
IPR005712	Ribosomal protein S5, bacterial-type	HAMAP	MF_01307_B	Ribosomal_S5_B	coord: 128..304 score: 32.405338
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 218..306 e-value: 1.0E-27 score: 97.5
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 228..298 e-value: 1.2E-25 score: 88.7
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 5..307
IPR018192	Ribosomal protein S5, N-terminal, conserved site	PROSITE	PS00585	RIBOSOMAL_S5	coord: 168..200
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 221..299

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g021400.1	Lcy04g021400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009955	adaxial/abaxial pattern specification
biological_process	GO:1901259	chloroplast rRNA processing
biological_process	GO:0032544	plastid translation
biological_process	GO:0009409	response to cold
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding