Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATTAATCCAAATATTTGTCTGTTATGTAAGAATGAAGCTGAGTCAATTGACCACTTGCTTGTCCACTGTGAATGGGCTTATAATCTTCGAAATATTTTGTTTAAAGCTGCCGGCATCCAGACTTCTCCCCCGCCAAGGGTTGAACTTCTTTGCGAAGAAATTTTTGCGAAGTCCATTAACTCCCAGAAGGATATTCTTATTCGACATATTCAAGTGACTATTACTTGGATTATCTGGAAGGAGCGCAACAATCGAATTTTTCAAAACAAAGATCGTAGCTTGCCAATTCTCTGGGAAGATTCTCTCTCTTTAGCGGCTGTTTGGTCTTCTAAATGTACTCTTTTTGCTAACCATGATGCTTCTTCCATAGCTCTTAATTGGAAGGCTTTTTT
mRNA sequence
ATGATGATTAATCCAAATATTTGTCTGTTATGTAAGAATGAAGCTGAGTCAATTGACCACTTGCTTGTCCACTGTGAATGGGCTTATAATCTTCGAAATATTTTGTTTAAAGCTGCCGGCATCCAGACTTCTCCCCCGCCAAGGGTTGAACTTCTTTGCGAAGAAATTTTTGCGAAGTCCATTAACTCCCAGAAGGATATTCTTATTCGACATATTCAAGTGACTATTACTTGGATTATCTGGAAGGAGCGCAACAATCGAATTTTTCAAAACAAAGATCGTAGCTTGCCAATTCTCTGGGAAGATTCTCTCTCTTTAGCGGCTGTTTGGTCTTCTAAATGTACTCTTTTTGCTAACCATGATGCTTCTTCCATAGCTCTTAATTGGAAGGCTTTTTT
Coding sequence (CDS)
ATGATGATTAATCCAAATATTTGTCTGTTATGTAAGAATGAAGCTGAGTCAATTGACCACTTGCTTGTCCACTGTGAATGGGCTTATAATCTTCGAAATATTTTGTTTAAAGCTGCCGGCATCCAGACTTCTCCCCCGCCAAGGGTTGAACTTCTTTGCGAAGAAATTTTTGCGAAGTCCATTAACTCCCAGAAGGATATTCTTATTCGACATATTCAAGTGACTATTACTTGGATTATCTGGAAGGAGCGCAACAATCGAATTTTTCAAAACAAAGATCGTAGCTTGCCAATTCTCTGGGAAGATTCTCTCTCTTTAGCGGCTGTTTGGTCTTCTAAATGTACTCTTTTTGCTAACCATGATGCTTCTTCCATAGCTCTTAATTGGAAGGCTTTTTT
Protein sequence
MMINPNICLLCKNEAESIDHLLVHCEWAYNLRNILFKAAGIQTSPPPRVELLCEEIFAKSINSQKDILIRHIQVTITWIIWKERNNRIFQNKDRSLPILWEDSLSLAAVWSSKCTLFANHDASSIALNWKAF
Homology
BLAST of Lcy04g012890 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 104.8 bits (260), Expect = 2.9e-19
Identity = 52/130 (40.00%), Postives = 78/130 (60.00%), Query Frame = 0
Query: 3 INPNICLLCKNEAESIDHLLVHCEWAYNLRNILFKAAGIQTSPPPRVELLCEEIFAKSIN 62
++PN C +C E I+HL +HC ++ L + KA S P V+ L + I + +I
Sbjct: 1015 LSPNWCYMCNKSQEDINHLFIHCPYSQQLWS-KAKALLNWNSTPTDVQSLIQNICSLNIR 1074
Query: 63 SQKDILIRHIQVTITWIIWKERNNRIFQNKDRSLPILWEDSLSLAAVWSSKCTLFANHDA 122
+QK ++ + TI W IW ERNNRIF+ ++++ LWED+L+ +WS K LF+N+D
Sbjct: 1075 NQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCKSKLFSNYDC 1134
Query: 123 SSIALNWKAF 133
SIALN AF
Sbjct: 1135 CSIALNISAF 1143
BLAST of Lcy04g012890 vs. ExPASy TrEMBL
Match:
A0A5A7ULE1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001490 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 2.1e-17
Identity = 50/130 (38.46%), Postives = 75/130 (57.69%), Query Frame = 0
Query: 3 INPNICLLCKNEAESIDHLLVHCEWAYNLRNILFKAAGIQTSPPPRVELLCEEIFAKSIN 62
++PN +C E I+HL +HC ++ L + KA TS P V+ L + I + +I
Sbjct: 267 LSPNWYYMCNKSQEDINHLFIHCPYSQQLWS-KAKALLKWTSTPNDVQSLAQNICSLNIR 326
Query: 63 SQKDILIRHIQVTITWIIWKERNNRIFQNKDRSLPILWEDSLSLAAVWSSKCTLFANHDA 122
+QK ++ + + W IW ERNNRIF+ +++ LWED L+ +WS K LF+N+D
Sbjct: 327 TQKGLITFNTSAILLWKIWLERNNRIFKQQEKDSQDLWEDILAQTGLWSCKSKLFSNYDC 386
Query: 123 SSIALNWKAF 133
SIALN AF
Sbjct: 387 CSIALNISAF 395
BLAST of Lcy04g012890 vs. ExPASy TrEMBL
Match:
A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)
HSP 1 Score: 98.2 bits (243), Expect = 2.7e-17
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0
Query: 3 INPNICLLCKNEAESIDHLLVHCEWAYNLRNILFKAAGI--QTSPPPRVELLCEEIFAKS 62
++PN C +C E I+HL +HC ++ L + KA + S P V+ L + I + +
Sbjct: 907 LSPNWCYMCNKSQEDINHLFIHCPYSQQLWS---KAQALLKWNSTPNDVKSLAQNICSLN 966
Query: 63 INSQKDILIRHIQVTITWIIWKERNNRIFQNKDRSLPILWEDSLSLAAVWSSKCTLFANH 122
I +QK ++ + + W IW ERNNRIF+ + + LWED L+ +WS K LF+N+
Sbjct: 967 IKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNY 1026
Query: 123 DASSIALNWKAF 133
D SIALN AF
Sbjct: 1027 DCCSIALNISAF 1035
BLAST of Lcy04g012890 vs. ExPASy TrEMBL
Match:
A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)
HSP 1 Score: 98.2 bits (243), Expect = 2.7e-17
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0
Query: 3 INPNICLLCKNEAESIDHLLVHCEWAYNLRNILFKAAGI--QTSPPPRVELLCEEIFAKS 62
++PN C +C E I+HL +HC ++ L + KA + S P V+ L + I + +
Sbjct: 813 LSPNWCYMCNKSQEDINHLFIHCPYSQQLWS---KAQALLKWNSTPNDVKSLAQNICSLN 872
Query: 63 INSQKDILIRHIQVTITWIIWKERNNRIFQNKDRSLPILWEDSLSLAAVWSSKCTLFANH 122
I +QK ++ + + W IW ERNNRIF+ + + LWED L+ +WS K LF+N+
Sbjct: 873 IKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNY 932
Query: 123 DASSIALNWKAF 133
D SIALN AF
Sbjct: 933 DCCSIALNISAF 941
BLAST of Lcy04g012890 vs. ExPASy TrEMBL
Match:
A0A438F981 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_072566 PE=4 SV=1)
HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 50/129 (38.76%), Postives = 69/129 (53.49%), Query Frame = 0
Query: 5 PNICLLCKNEAESIDHLLVHCEWAYNLRNILFKAAGIQTSPPPRVELLCEEIFAKSINSQ 64
P C+LCK ESIDHL +HC L N LFK AG PP E + F NS
Sbjct: 46 PQWCILCKGNGESIDHLFLHCPVTIGLWNKLFKLAGSDWVPPRSFEDMLVIAFKGLGNSL 105
Query: 65 KDILIRHIQ-VTITWIIWKERNNRIFQNKDRSLPILWEDSLSLAAVWSSKCTLFANHDAS 124
+ + + +T+ WI+W+ERNNRIF++K RS LW+ L +++W+S F +
Sbjct: 106 RGKTLWQVACLTLVWIVWQERNNRIFEDKGRSEETLWDLVLFYSSLWASCSAAFRGVPLN 165
Query: 125 SIALNWKAF 133
+ LNW F
Sbjct: 166 VLQLNWSEF 174
BLAST of Lcy04g012890 vs. NCBI nr
Match:
KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 104.8 bits (260), Expect = 6.0e-19
Identity = 52/130 (40.00%), Postives = 78/130 (60.00%), Query Frame = 0
Query: 3 INPNICLLCKNEAESIDHLLVHCEWAYNLRNILFKAAGIQTSPPPRVELLCEEIFAKSIN 62
++PN C +C E I+HL +HC ++ L + KA S P V+ L + I + +I
Sbjct: 1015 LSPNWCYMCNKSQEDINHLFIHCPYSQQLWS-KAKALLNWNSTPTDVQSLIQNICSLNIR 1074
Query: 63 SQKDILIRHIQVTITWIIWKERNNRIFQNKDRSLPILWEDSLSLAAVWSSKCTLFANHDA 122
+QK ++ + TI W IW ERNNRIF+ ++++ LWED+L+ +WS K LF+N+D
Sbjct: 1075 NQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCKSKLFSNYDC 1134
Query: 123 SSIALNWKAF 133
SIALN AF
Sbjct: 1135 CSIALNISAF 1143
BLAST of Lcy04g012890 vs. NCBI nr
Match:
KAA0056004.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 98.6 bits (244), Expect = 4.3e-17
Identity = 50/130 (38.46%), Postives = 75/130 (57.69%), Query Frame = 0
Query: 3 INPNICLLCKNEAESIDHLLVHCEWAYNLRNILFKAAGIQTSPPPRVELLCEEIFAKSIN 62
++PN +C E I+HL +HC ++ L + KA TS P V+ L + I + +I
Sbjct: 267 LSPNWYYMCNKSQEDINHLFIHCPYSQQLWS-KAKALLKWTSTPNDVQSLAQNICSLNIR 326
Query: 63 SQKDILIRHIQVTITWIIWKERNNRIFQNKDRSLPILWEDSLSLAAVWSSKCTLFANHDA 122
+QK ++ + + W IW ERNNRIF+ +++ LWED L+ +WS K LF+N+D
Sbjct: 327 TQKGLITFNTSAILLWKIWLERNNRIFKQQEKDSQDLWEDILAQTGLWSCKSKLFSNYDC 386
Query: 123 SSIALNWKAF 133
SIALN AF
Sbjct: 387 CSIALNISAF 395
BLAST of Lcy04g012890 vs. NCBI nr
Match:
KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 98.2 bits (243), Expect = 5.6e-17
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0
Query: 3 INPNICLLCKNEAESIDHLLVHCEWAYNLRNILFKAAGI--QTSPPPRVELLCEEIFAKS 62
++PN C +C E I+HL +HC ++ L + KA + S P V+ L + I + +
Sbjct: 813 LSPNWCYMCNKSQEDINHLFIHCPYSQQLWS---KAQALLKWNSTPNDVKSLAQNICSLN 872
Query: 63 INSQKDILIRHIQVTITWIIWKERNNRIFQNKDRSLPILWEDSLSLAAVWSSKCTLFANH 122
I +QK ++ + + W IW ERNNRIF+ + + LWED L+ +WS K LF+N+
Sbjct: 873 IKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNY 932
Query: 123 DASSIALNWKAF 133
D SIALN AF
Sbjct: 933 DCCSIALNISAF 941
BLAST of Lcy04g012890 vs. NCBI nr
Match:
KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 98.2 bits (243), Expect = 5.6e-17
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0
Query: 3 INPNICLLCKNEAESIDHLLVHCEWAYNLRNILFKAAGI--QTSPPPRVELLCEEIFAKS 62
++PN C +C E I+HL +HC ++ L + KA + S P V+ L + I + +
Sbjct: 907 LSPNWCYMCNKSQEDINHLFIHCPYSQQLWS---KAQALLKWNSTPNDVKSLAQNICSLN 966
Query: 63 INSQKDILIRHIQVTITWIIWKERNNRIFQNKDRSLPILWEDSLSLAAVWSSKCTLFANH 122
I +QK ++ + + W IW ERNNRIF+ + + LWED L+ +WS K LF+N+
Sbjct: 967 IKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNY 1026
Query: 123 DASSIALNWKAF 133
D SIALN AF
Sbjct: 1027 DCCSIALNISAF 1035
BLAST of Lcy04g012890 vs. NCBI nr
Match:
RVW56512.1 (hypothetical protein CK203_072566 [Vitis vinifera])
HSP 1 Score: 96.3 bits (238), Expect = 2.1e-16
Identity = 50/129 (38.76%), Postives = 69/129 (53.49%), Query Frame = 0
Query: 5 PNICLLCKNEAESIDHLLVHCEWAYNLRNILFKAAGIQTSPPPRVELLCEEIFAKSINSQ 64
P C+LCK ESIDHL +HC L N LFK AG PP E + F NS
Sbjct: 46 PQWCILCKGNGESIDHLFLHCPVTIGLWNKLFKLAGSDWVPPRSFEDMLVIAFKGLGNSL 105
Query: 65 KDILIRHIQ-VTITWIIWKERNNRIFQNKDRSLPILWEDSLSLAAVWSSKCTLFANHDAS 124
+ + + +T+ WI+W+ERNNRIF++K RS LW+ L +++W+S F +
Sbjct: 106 RGKTLWQVACLTLVWIVWQERNNRIFEDKGRSEETLWDLVLFYSSLWASCSAAFRGVPLN 165
Query: 125 SIALNWKAF 133
+ LNW F
Sbjct: 166 VLQLNWSEF 174
BLAST of Lcy04g012890 vs. TAIR 10
Match:
AT1G60720.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 46.6 bits (109), Expect = 1.8e-05
Identity = 33/97 (34.02%), Postives = 47/97 (48.45%), Query Frame = 0
Query: 8 CLLCKNEAESIDHLLVHCEWAYNLRNILFKAAGIQTSPPPRVELLCE--EIFA--KSINS 67
C LC E ES DHLL CE+A + + F PR L C E+ + +S +S
Sbjct: 169 CCLCTIETESRDHLLFSCEFAAQVWRLAFSRL------CPRQRLFCSWAELLSWMRSSSS 228
Query: 68 QKDILIRHIQV-TITWIIWKERNNRIFQNKDRSLPIL 100
L+R + I + IW++RNN + N R PI+
Sbjct: 229 SAPSLLRKVSAHAIIYNIWRQRNN-VLHNNLRIAPII 258
BLAST of Lcy04g012890 vs. TAIR 10
Match:
AT3G25270.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 41.6 bits (96), Expect = 5.8e-04
Identity = 27/103 (26.21%), Postives = 46/103 (44.66%), Query Frame = 0
Query: 8 CLLCKNEAESIDHLLVHCEWAYNLRNILFKAAGIQTSPPPRVELLCE---EIFAKSINSQ 67
C C E E+ HL C +A +++A+GI + E E+ S +
Sbjct: 56 CHRCCQEDETSQHLFFDCFYAQQ----VWRASGIPHQELRTTGITMETKMELLLSSCLAN 115
Query: 68 KDILIRHIQVTITWIIWKERNNRIFQNKDRSLPILWEDSLSLA 108
+ + ++ + I W +WK RN +FQ K I W+++L A
Sbjct: 116 RQPQLFNLAIWILWRLWKSRNQLVFQQKS----ISWQNTLQRA 150
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7T9I7 | 2.9e-19 | 40.00 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5A7ULE1 | 2.1e-17 | 38.46 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5A7TIB8 | 2.7e-17 | 37.88 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5A7TR15 | 2.7e-17 | 37.88 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A438F981 | 1.0e-16 | 38.76 | zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_072566 PE=4... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0039950.1 | 6.0e-19 | 40.00 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... | [more] |
| KAA0056004.1 | 4.3e-17 | 38.46 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| KAA0044556.1 | 5.6e-17 | 37.88 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| KAA0041397.1 | 5.6e-17 | 37.88 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| RVW56512.1 | 2.1e-16 | 38.76 | hypothetical protein CK203_072566 [Vitis vinifera] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G60720.1 | 1.8e-05 | 34.02 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |
| AT3G25270.1 | 5.8e-04 | 26.21 | Ribonuclease H-like superfamily protein | [more] |
