Lcy04g004480 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g004480
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Integrase core domain containing protein
Location	Chr04: 29774565 .. 29775597 (-)
RNA-Seq Expression	Lcy04g004480
Synteny	Lcy04g004480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGATATACTGGATTCACAGTAAGCCCAGTAAATGGGAGACATGCTTACATACAATTTCATGTAAGCTTAATATCATAAACCTCTGCTTCTCCTATAGTTACTTAGTATTGAGAGTAAGAGCACAATGGGCCGTAATACAGAAGATGAAAGGAAGAACGGGCCAGCCCATATTCAAAAGGAAAGGCCATCTACAATCCAGAAAGTTCGCTAGTCTGGGCATTCTCACAAAGTACCATTATGTTATTTTTCCTTCAATTATATTGTAACAGCTGTCCCTTTCCTATTATTCTTTATATTCTTTTATTCCTTATTCGTGCCCTAATAATGTGTATAAAAGTGCCTTGCTATTCATGAATGAAAAGGGTAACAGAGTATTATCTCCCTCAATTGTCTCAACAGTCTAAAGTTTGATTTGGTATCAGAGCTTTAAATGGCAAGATTCAATTCAACCGGATCCTCCGCCGTATCCACCGGAACAACCAATTTCAGCAACCCGCCGCTAAACCAGCTATTGAACCAAATCACAACAATCAAGCTAGATCGCAGCAACTTCCATCTATGGATGAATTTGGCGTTGCCCATCCTTCGCAGTTATAAGCTGGAAGGACATCTCTCAGGTTAGAATCTGTGTTCTCCTCAGTTCATTCAATCGCCGATTACAGAGGAGAGAACAACCAGCACTGAAACTGGTGCAAGTGGAGCGTCTGAGTCTTCATCAGCCGCTGGAGTTCTGAATCCACAGTATGAGTCGTGGATTGCGGTTGACCAGTTGTTACTCGGGTGGTTGTATAATTCAATGACACCCGAGGTTGAGACCCAAGTGATGGGATATGAAAACACTCAAGGTCTGTGGGCAGCCATTCAAGAGCTCTATGGAGTTCACTCTCGAGCCGAGGAAGATTACCTCCGTCAAATTTTTCAACAGTCAAGGAAAGGAAACCAGAAGATGGCCGACTACTTACGCATAATGAAGAACCACGCTGATAACCTAGGGCAGACAGGCAGTCCGGTTACATCACGACCTTGA

mRNA sequence

ATGGCAGGATATACTGGATTCACATTCATTCAATCGCCGATTACAGAGGAGAGAACAACCAGCACTGAAACTGGTGCAAGTGGAGCGTCTGAGTCTTCATCAGCCGCTGGAGTTCTGAATCCACAGTATGAGTCGTGGATTGCGGTTGACCAGTTGTTACTCGGGTGGTTGTATAATTCAATGACACCCGAGGTTGAGACCCAAGTGATGGGATATGAAAACACTCAAGGTCTGTGGGCAGCCATTCAAGAGCTCTATGGAGTTCACTCTCGAGCCGAGGAAGATTACCTCCGTCAAATTTTTCAACAGTCAAGGAAAGGAAACCAGAAGATGGCCGACTACTTACGCATAATGAAGAACCACGCTGATAACCTAGGGCAGACAGGCAGTCCGGTTACATCACGACCTTGA

Coding sequence (CDS)

ATGGCAGGATATACTGGATTCACATTCATTCAATCGCCGATTACAGAGGAGAGAACAACCAGCACTGAAACTGGTGCAAGTGGAGCGTCTGAGTCTTCATCAGCCGCTGGAGTTCTGAATCCACAGTATGAGTCGTGGATTGCGGTTGACCAGTTGTTACTCGGGTGGTTGTATAATTCAATGACACCCGAGGTTGAGACCCAAGTGATGGGATATGAAAACACTCAAGGTCTGTGGGCAGCCATTCAAGAGCTCTATGGAGTTCACTCTCGAGCCGAGGAAGATTACCTCCGTCAAATTTTTCAACAGTCAAGGAAAGGAAACCAGAAGATGGCCGACTACTTACGCATAATGAAGAACCACGCTGATAACCTAGGGCAGACAGGCAGTCCGGTTACATCACGACCTTGA

Protein sequence

MAGYTGFTFIQSPITEERTTSTETGASGASESSSAAGVLNPQYESWIAVDQLLLGWLYNSMTPEVETQVMGYENTQGLWAAIQELYGVHSRAEEDYLRQIFQQSRKGNQKMADYLRIMKNHADNLGQTGSPVTSRP

Homology

[Close]

BLAST of Lcy04g004480 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 6.4e-38
Identity = 82/127 (64.57%), Postives = 98/127 (77.17%), Query Frame = 0


Query: 9   FIQSPITEERTTSTETGASGASESSSAAGVLNPQYESWIAVDQLLLGWLYNSMTPEVETQ 68
           F+Q  I    T+ T   A  +S  ++ A + NP YESW+  DQLLLGWLYNSMTPEV TQ
Sbjct: 2   FVQQSIGNMETSQTNISAPSSSSIATEAAI-NPLYESWVTTDQLLLGWLYNSMTPEVATQ 61

Query: 69  VMGYENTQGLWAAIQELYGVHSRAEEDYLRQIFQQSRKGNQKMADYLRIMKNHADNLGQT 128
           VMGYEN   LWAAIQEL+GV S+AEEDYLRQ+FQQ+RKG+ KM D+LR+MK+HADNLGQ 
Sbjct: 62  VMGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQA 121

Query: 129 GSPVTSR 136
           GSPV +R
Sbjct: 122 GSPVPTR 127

[Close]

BLAST of Lcy04g004480 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.6e-28
Identity = 68/123 (55.28%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 13  PITEERTTSTETGASGASESSSAAGVLNPQYESWIAVDQLLLGWLYNSMTPEVETQVMGY 72
           P T    T T T   G S SS ++  LNP YE+WI VD+LLLGWLYNSM  +V  QVMG+
Sbjct: 71  PPTHLVPTDTPTNIEG-STSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGF 130

Query: 73  ENTQGLWAAIQELYGVHSRAEEDYLRQIFQQSRKGNQKMADYLRIMKNHADNLGQTGSPV 132
             ++ LW A+QEL+GV SRAE DYL+Q+FQQ+ KG+ +M +YL++MK+HADNL   GS V
Sbjct: 131 STSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSV 190

Query: 133 TSR 136
           + R
Sbjct: 191 SVR 192

[Close]

BLAST of Lcy04g004480 vs. ExPASy TrEMBL
Match: A0A5A7UY76 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00940 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.7e-27
Identity = 65/127 (51.18%), Postives = 85/127 (66.93%), Query Frame = 0


Query: 9   FIQSPITEERTTSTETGASGASESSSAAGVLNPQYESWIAVDQLLLGWLYNSMTPEVETQ 68
           FI + I E ++        GAS  S+    +NP+++ W+  D LLLGW+YNSMT EV  Q
Sbjct: 24  FIINQIDESQSDGIAKATDGASSRSTETKTVNPKFDQWVTSDLLLLGWIYNSMTAEVAFQ 83

Query: 69  VMGYENTQGLWAAIQELYGVHSRAEEDYLRQIFQQSRKGNQKMADYLRIMKNHADNLGQT 128
           +MG+   + L  AIQ+L+GV SR EED+LR  FQ +RKGN KM DYLRIMK +A+NLGQ 
Sbjct: 84  LMGFNTAKDLEEAIQDLFGVQSRGEEDFLRHTFQTTRKGNSKMEDYLRIMKTNAENLGQA 143

Query: 129 GSPVTSR 136
           GSP+  R
Sbjct: 144 GSPIPLR 150

[Close]

BLAST of Lcy04g004480 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 65/123 (52.85%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 15  TEERTTSTETGASG--ASESSSAAGVLNPQYESWIAVDQLLLGWLYNSMTPEVETQVMGY 74
           +   TT TE GA     + SS    ++N  +E W+  D LLLGWLYNSMTP+V  Q+MG+
Sbjct: 75  SSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGF 134

Query: 75  ENTQGLWAAIQELYGVHSRAEEDYLRQIFQQSRKGNQKMADYLRIMKNHADNLGQTGSPV 134
            N + LW A Q+ +GV SRAEED+LRQ+ Q +RKGN KM +YL +MK + DNLGQ GSPV
Sbjct: 135 TNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVGSPV 194

Query: 135 TSR 136
             R
Sbjct: 195 PRR 197

[Close]

BLAST of Lcy04g004480 vs. ExPASy TrEMBL
Match: A0A5D3BCH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00140 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 65/123 (52.85%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 15  TEERTTSTETGASG--ASESSSAAGVLNPQYESWIAVDQLLLGWLYNSMTPEVETQVMGY 74
           +   TT TE GA     + SS    ++N  +E W+  D LLLGWLYNSMTP+V  Q+MG+
Sbjct: 75  SSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGF 134

Query: 75  ENTQGLWAAIQELYGVHSRAEEDYLRQIFQQSRKGNQKMADYLRIMKNHADNLGQTGSPV 134
            N + LW A Q+ +GV SRAEED+LRQ+ Q +RKGN KM +YL +MK + DNLGQ GSPV
Sbjct: 135 TNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVGSPV 194

Query: 135 TSR 136
             R
Sbjct: 195 PRR 197

[Close]

BLAST of Lcy04g004480 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-37
Identity = 82/127 (64.57%), Postives = 98/127 (77.17%), Query Frame = 0


Query: 9   FIQSPITEERTTSTETGASGASESSSAAGVLNPQYESWIAVDQLLLGWLYNSMTPEVETQ 68
           F+Q  I    T+ T   A  +S  ++ A + NP YESW+  DQLLLGWLYNSMTPEV TQ
Sbjct: 2   FVQQSIGNMETSQTNISAPSSSSIATEAAI-NPLYESWVTTDQLLLGWLYNSMTPEVATQ 61

Query: 69  VMGYENTQGLWAAIQELYGVHSRAEEDYLRQIFQQSRKGNQKMADYLRIMKNHADNLGQT 128
           VMGYEN   LWAAIQEL+GV S+AEEDYLRQ+FQQ+RKG+ KM D+LR+MK+HADNLGQ 
Sbjct: 62  VMGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQA 121

Query: 129 GSPVTSR 136
           GSPV +R
Sbjct: 122 GSPVPTR 127

[Close]

BLAST of Lcy04g004480 vs. NCBI nr
Match: XP_038904321.1 (uncharacterized protein LOC120090675 [Benincasa hispida])

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-30
Identity = 70/112 (62.50%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 25  GASGASESSSAAGV-LNPQYESWIAVDQLLLGWLYNSMTPEVETQVMGYENTQGLWAAIQ 84
           G+SG+  SSS+  + +NPQY +W+AVDQLLLGWLYNSMTP++  QVMG+E  + LW  IQ
Sbjct: 27  GSSGSGASSSSTTLEVNPQYRAWMAVDQLLLGWLYNSMTPKIAIQVMGFECARDLWINIQ 86

Query: 85  ELYGVHSRAEEDYLRQIFQQSRKGNQKMADYLRIMKNHADNLGQTGSPVTSR 136
           +L+G+ SRAEEDYLR +FQ +RKGN KM DYLR MK + DNL Q GSPV  R
Sbjct: 87  QLFGIQSRAEEDYLRHVFQTTRKGNLKMEDYLRTMKMNVDNLEQAGSPVPPR 138

[Close]

BLAST of Lcy04g004480 vs. NCBI nr
Match: XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-29
Identity = 70/112 (62.50%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 25  GASGASESSSAAGV-LNPQYESWIAVDQLLLGWLYNSMTPEVETQVMGYENTQGLWAAIQ 84
           G+SG+  SSS   + +NPQYESW+AVDQLLLGWLYNSMTPEV  QVMG E  + LW +I 
Sbjct: 27  GSSGSGASSSLTALEVNPQYESWMAVDQLLLGWLYNSMTPEVAIQVMGCECAKDLWTSIP 86

Query: 85  ELYGVHSRAEEDYLRQIFQQSRKGNQKMADYLRIMKNHADNLGQTGSPVTSR 136
           +L+GV SR EEDYLR +FQ +RKGN KM +YL+ MK + DNL Q GSP+  R
Sbjct: 87  QLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQTMKMNTDNLEQAGSPMPPR 138

[Close]

BLAST of Lcy04g004480 vs. NCBI nr
Match: XP_038905161.1 (uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida])

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-29
Identity = 70/112 (62.50%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 25  GASGASESSSAAGV-LNPQYESWIAVDQLLLGWLYNSMTPEVETQVMGYENTQGLWAAIQ 84
           G+SG+  SSS   + +NPQYESW+AVDQLLLGWLYNSMTPEV  QVMG E  + LW +I 
Sbjct: 27  GSSGSGASSSLTALEVNPQYESWMAVDQLLLGWLYNSMTPEVAIQVMGCECAKDLWTSIP 86

Query: 85  ELYGVHSRAEEDYLRQIFQQSRKGNQKMADYLRIMKNHADNLGQTGSPVTSR 136
           +L+GV SR EEDYLR +FQ +RKGN KM +YL+ MK + DNL Q GSP+  R
Sbjct: 87  QLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQTMKMNTDNLEQAGSPMPPR 138

[Close]

BLAST of Lcy04g004480 vs. NCBI nr
Match: XP_038887140.1 (uncharacterized protein LOC120077331 [Benincasa hispida])

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-29
Identity = 70/115 (60.87%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 21  STETGASGASESSSAAGVLNPQYESWIAVDQLLLGWLYNSMTPEVETQVMGYENTQGLWA 80
           STE  +S  + SSS A  +NPQYE+W+ VDQLLLGWLYNSMTPEV  QVMG    + LW 
Sbjct: 24  STEGNSSSGASSSSTALEVNPQYEAWMVVDQLLLGWLYNSMTPEVTIQVMGCGCAKDLWT 83

Query: 81  AIQELYGVHSRAEEDYLRQIFQQSRKGNQKMADYLRIMKNHADNLGQTGSPVTSR 136
           +IQ+L+ + SR EEDYLR +FQ++RKGN KM DYLR MK +ADNL + GSP+  R
Sbjct: 84  SIQQLFVLQSRVEEDYLRHVFQRTRKGNLKMEDYLRSMKMNADNLEKAGSPMPQR 138

The following BLAST results are available for this feature:

BLAST of Lcy04g004480 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g004480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5J0	6.4e-38	64.57	uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DCW4	4.6e-28	55.28	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5A7UY76	1.7e-27	51.18	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7SIT7	2.3e-27	52.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BCH9	2.3e-27	52.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy04g004480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148963.1	1.3e-37	64.57	uncharacterized protein LOC111017501 [Momordica charantia]	[more]
XP_038904321.1	1.6e-30	62.50	uncharacterized protein LOC120090675 [Benincasa hispida]	[more]
XP_038905164.1	1.3e-29	62.50	uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]	[more]
XP_038905161.1	1.3e-29	62.50	uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]	[more]
XP_038887140.1	1.7e-29	60.87	uncharacterized protein LOC120077331 [Benincasa hispida]	[more]

BLAST of Lcy04g004480 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..35
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 36..133
None	No IPR available	PANTHER	PTHR47481:SF3	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 36..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g004480.1	Lcy04g004480.1	mRNA