Lcy03g019060 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g019060
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUBP1-associated proteins 1C-like isoform X3
LocationChr03: 52653956 .. 52657030 (+)
RNA-Seq ExpressionLcy03g019060
SyntenyLcy03g019060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGGTGGCCAAACATTGGGTTCCAAACTCTTAGGAGTTTGAAAAGTGCAAGGTTTTCCTAAAAAAAAAAAGAAAAAAAAAAGTGCAAGGTTTAATTTTGATTTAGATTTGGTTGAATACATTGTGTTAGAACTCTTTAAGGGCAATGTTGGGGTTCCGAATTCTCGAAGGGGGAATCGAGCCACGTAATTTGATCGATATTTGGTTAATACCTCATGTAGAACTCTTTAGGTGGGTTATGAGCATTACTTTTAGTATGTTATTGAAATTTCTAGAGTTATATCTACTTAGTTCTTGTACGTTTGGGTGGATTCTAATAAGTTATTGAACATTTAATTTTGTGTCTTATGTTTAGAGTGTTAGTTCCACTAGGTTAATGTTTACATGTATCAAACATCTGACGAACCTATTTGAAAATTTTCATTCAGTTATTTTAAGCCTTAAATACTATCCTTGTCGTGTCATGTAAGGTCGAGACTTATTTGACATAAAATTGAAAAAAATTAAAAAAAAAAAAGTTTAAAGGTTGTTGTTACATGAGGAAAGTTTGTTTTATATCAACCCGGACCCAATAACAATAACTTCTCTCTATTATATATATATAGTCTTTTTTTTTAGCCTTTAACAAGGAATTAATGAGAAATTATCAAGAAAACCACTACAATGTGCACCATGGTTTGAATGTTTTTTTTTAACATGTGGGATGAAGAGATTGAATTATTTGGTCATTAGAACAAACTTAATATCAGTTGAAATATGCTTATGTTAGCGCTAGATTGAGACATCGACAATCACATAAAAAAAATTCATATTAAAACTAGTTACGAGTGATTATGACGATTATTAAATACATATTTGAGTACACATGACACATTTGATTTTCCGTCATTTAAAAATCACTATAATGCATGCTCTAAATTGAATTCGAATAACCACGGCCGGCTTTCAATGAAACGAAACAATATTACAATGATAAAATAAAATAAAATAAAACCAAATAGTTTGTTTTTCTTTATTAGGATATCTGTCATGATCTTCTTCACTTCACCACGGAAGCCACGTTTTCGTCTCTTTTTATTCTCCTTCCACACTCCCATTTCCATCCTCCTCAACTTTAGTTTCACCAATCTCTCCCTTTGCCTTATCGCCTCGTTTAATTTCTGATGGATTTCAGGTTCCGAGCCATCCACAACAAACCGCCGCCCGCCGCTTCCAGTTCCGGAAGCTCCTCCGATCACCTGCTGCGAGGTTCGTAACCTTAATCGAAATGCTACATATAGAAATAATCTCTCTGTTTAATTTCTTCAGATCTTTTTCAAATGCTTCATCGAAATGGAAACATACATTTCAGTTTTCTAAGAAGATTTAATCTAATAATCTAATCAGATGATTCTCCAAACGCGGAGCTCGTGAAACAGAGGATTAAAGAAGAGATAATGATCAGAGAGATTGCGAGCCGACGAATGCTCGAGGCGGAGATCAGGAGGGAGCTCATCATCGAGCAAGAACTAGCGATGCATAGGGCTGCGGGCCGGACGGAGAGGTTAGCATTGGACGAACATTTTGCAATGCGATTGTTGAACCAGAGGCTGAATCACGTTGTGGATCAGCCTTCCACAGGTCTATTAGCGGTTCCAGGTTTCAGTTCTTCGCTCGACTCCCAAACGATTCGTTCGTTTTCGGAGCCTCGAAAAGAAGAACCGAAGGCTTTGGAAGATGAAAAGGACAAGTTAATTTTGCTGGTTAGTCGAATACTATATCTACTCTCCATATCTCTCCTTATTTGATTCTCAAATTACGTTCATACAGTTTCTGATTTGGATTGAAAGTAGTTTATGATGGTTGACATTATTATGGTGTTAAATAACATTTTGGTTTATAAACATGTGATTTTCTTTCTTCTTCTTCTTTTTTTTTTTTTTTTGTTAGCCTTGAGCTTTGAAAATATCTTGGTTTCAAACTTTTAAGTTTTACTTTATTTAATTTTTAAACTTTTAAAATATTTATTTTTATCCCTAAAATTATAAAATGTAATATATTTTTGAGTTCAACAATATCATTATGTAAATGAATCTTAGTGCATGTTTGGAAGTGATTTTGAAATTGCTAAAATCACTTTTGTCACGTTCGAAATCTCTCTAAAACATACTTTTAATTATGCAAATCAATTTCATGTTTGATTTTACACTTTTAAATGTGATTTACACATCATTAAAATTGATTTTGAATTATAAAGACGTGTTTCGAAATAATTTTGAATACGACAAAAGTGATTTTAACAATTTCAAAATCACTCTCAAACATGCAATTAGATAACAAAATAATTGCTTATGGGAGTTCAATAAATCAAAATAAAACATGGAAAAAGAATGGTGAGATTTAAATTACTTTTCAAACTAAAATGATGTCATTGACCTTGTATTATAGTTGGATAGTAACTGTCATGTATCCTCAACTAAACGTTATCGAAGTAAAAAATAGACATCTGCATATATTATCTAATATATAGGTAATTAGACTAAGGATATATAAACTGGAAGATTGAATAATTATTTATGTTCTGGGAATCGAAATTGCAGCCAAAGCCAGACCCAGAAAAATTCAAAGCGAAGAGGAAAGCCGAGGGTCCACCGACGGAGGCTGATACCAATACAGAGCCATTAATTCCTTCGATTAGTTCGAAGAAATTAGCAAAGAAAGAGTTCATTTGTACAATGTGCAAAATCACAACAACAAGCGAAATTACACTGAATACACACTTAAAAGGCAAGAAGCACAAGGCCAAAGAGGGACGTGGCCTAGAAACTGGGGAAGTCCACAAGCAACCAAGCCCACCGGAACAGGCACCACCCCTTGAAAACAAGGGCAGCTTCAAATTCTGGTGCGAAACGTGCCTAGTTGGAACTCGAAGCTTGGTTGTTATGGAGACACATAACAAGGGGAAGAAGCATAGGGCTCGCCTTTTGAAACTTGGTCAGTGCAAATTGGACGAGCAAAAGGAACCGAATGGGCTTATGTCTTGTGCATCCCCAGAAGGAAGAGGAGATGACTCAAATTCCATCACCTTATAA

mRNA sequence

ATGTCAAGGTGGCCAAACATTGGGTTCCAAACTCTTAGGAGTTTGAAAAGTGCAAGGTTCCGAGCCATCCACAACAAACCGCCGCCCGCCGCTTCCAGTTCCGGAAGCTCCTCCGATCACCTGCTGCGAGATGATTCTCCAAACGCGGAGCTCGTGAAACAGAGGATTAAAGAAGAGATAATGATCAGAGAGATTGCGAGCCGACGAATGCTCGAGGCGGAGATCAGGAGGGAGCTCATCATCGAGCAAGAACTAGCGATGCATAGGGCTGCGGGCCGGACGGAGAGGTTAGCATTGGACGAACATTTTGCAATGCGATTGTTGAACCAGAGGCTGAATCACGTTGTGGATCAGCCTTCCACAGGTCTATTAGCGGTTCCAGGTTTCAGTTCTTCGCTCGACTCCCAAACGATTCGTTCGTTTTCGGAGCCTCGAAAAGAAGAACCGAAGGCTTTGGAAGATGAAAAGGACAAGTTAATTTTGCTGCCAAAGCCAGACCCAGAAAAATTCAAAGCGAAGAGGAAAGCCGAGGGTCCACCGACGGAGGCTGATACCAATACAGAGCCATTAATTCCTTCGATTAGTTCGAAGAAATTAGCAAAGAAAGAGTTCATTTGTACAATGTGCAAAATCACAACAACAAGCGAAATTACACTGAATACACACTTAAAAGGCAAGAAGCACAAGGCCAAAGAGGGACGTGGCCTAGAAACTGGGGAAGTCCACAAGCAACCAAGCCCACCGGAACAGGCACCACCCCTTGAAAACAAGGGCAGCTTCAAATTCTGGTGCGAAACGTGCCTAGTTGGAACTCGAAGCTTGGTTGTTATGGAGACACATAACAAGGGGAAGAAGCATAGGGCTCGCCTTTTGAAACTTGGTCAGTGCAAATTGGACGAGCAAAAGGAACCGAATGGGCTTATGTCTTGTGCATCCCCAGAAGGAAGAGGAGATGACTCAAATTCCATCACCTTATAA

Coding sequence (CDS)

ATGTCAAGGTGGCCAAACATTGGGTTCCAAACTCTTAGGAGTTTGAAAAGTGCAAGGTTCCGAGCCATCCACAACAAACCGCCGCCCGCCGCTTCCAGTTCCGGAAGCTCCTCCGATCACCTGCTGCGAGATGATTCTCCAAACGCGGAGCTCGTGAAACAGAGGATTAAAGAAGAGATAATGATCAGAGAGATTGCGAGCCGACGAATGCTCGAGGCGGAGATCAGGAGGGAGCTCATCATCGAGCAAGAACTAGCGATGCATAGGGCTGCGGGCCGGACGGAGAGGTTAGCATTGGACGAACATTTTGCAATGCGATTGTTGAACCAGAGGCTGAATCACGTTGTGGATCAGCCTTCCACAGGTCTATTAGCGGTTCCAGGTTTCAGTTCTTCGCTCGACTCCCAAACGATTCGTTCGTTTTCGGAGCCTCGAAAAGAAGAACCGAAGGCTTTGGAAGATGAAAAGGACAAGTTAATTTTGCTGCCAAAGCCAGACCCAGAAAAATTCAAAGCGAAGAGGAAAGCCGAGGGTCCACCGACGGAGGCTGATACCAATACAGAGCCATTAATTCCTTCGATTAGTTCGAAGAAATTAGCAAAGAAAGAGTTCATTTGTACAATGTGCAAAATCACAACAACAAGCGAAATTACACTGAATACACACTTAAAAGGCAAGAAGCACAAGGCCAAAGAGGGACGTGGCCTAGAAACTGGGGAAGTCCACAAGCAACCAAGCCCACCGGAACAGGCACCACCCCTTGAAAACAAGGGCAGCTTCAAATTCTGGTGCGAAACGTGCCTAGTTGGAACTCGAAGCTTGGTTGTTATGGAGACACATAACAAGGGGAAGAAGCATAGGGCTCGCCTTTTGAAACTTGGTCAGTGCAAATTGGACGAGCAAAAGGAACCGAATGGGCTTATGTCTTGTGCATCCCCAGAAGGAAGAGGAGATGACTCAAATTCCATCACCTTATAA

Protein sequence

MSRWPNIGFQTLRSLKSARFRAIHNKPPPAASSSGSSSDHLLRDDSPNAELVKQRIKEEIMIREIASRRMLEAEIRRELIIEQELAMHRAAGRTERLALDEHFAMRLLNQRLNHVVDQPSTGLLAVPGFSSSLDSQTIRSFSEPRKEEPKALEDEKDKLILLPKPDPEKFKAKRKAEGPPTEADTNTEPLIPSISSKKLAKKEFICTMCKITTTSEITLNTHLKGKKHKAKEGRGLETGEVHKQPSPPEQAPPLENKGSFKFWCETCLVGTRSLVVMETHNKGKKHRARLLKLGQCKLDEQKEPNGLMSCASPEGRGDDSNSITL
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8VD121.6e-0427.45Zinc finger protein 385A OS=Mus musculus OX=10090 GN=Znf385a PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A5D3B8001.6e-5848.88UBP1-associated proteins 1C-like isoform X3 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3B9S71.6e-5848.88uncharacterized protein LOC103487343 OS=Cucumis melo OX=3656 GN=LOC103487343 PE=... [more]
A0A6J1EJN46.0e-3477.12uncharacterized protein LOC111433915 OS=Cucurbita moschata OX=3662 GN=LOC1114339... [more]
A0A059CKW44.9e-2837.05Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C00251 PE=4 SV... [more]
A0A6J1HN473.2e-2769.83uncharacterized protein LOC111465139 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
XP_038880353.16.1e-7355.96zinc finger protein 385B [Benincasa hispida][more]
XP_008443847.13.2e-5848.88PREDICTED: uncharacterized protein LOC103487343 [Cucumis melo] >KAA0035096.1 UBP... [more]
XP_022926958.11.2e-3377.12uncharacterized protein LOC111433915 [Cucurbita moschata][more]
XP_010047067.21.6e-2837.41uncharacterized protein LOC104436029 [Eucalyptus grandis][more]
KCW78821.11.0e-2737.05hypothetical protein EUGRSUZ_C00251 [Eucalyptus grandis][more]
Match NameE-valueIdentityDescription
AT2G24030.11.3e-1228.97zinc ion binding;nucleic acid binding [more]
AT5G61190.12.1e-0730.07putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain [more]
AT2G24030.22.6e-0527.69zinc ion binding;nucleic acid binding [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 201..235
e-value: 5.5E-4
score: 29.2
coord: 259..293
e-value: 0.056
score: 22.2
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 262..286
e-value: 120.0
score: 3.7
coord: 204..228
e-value: 0.071
score: 22.2
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 241..292
e-value: 2.7E-7
score: 32.0
coord: 182..233
e-value: 1.1E-10
score: 42.9
NoneNo IPR availablePFAMPF12874zf-metcoord: 262..286
e-value: 4.4E-5
score: 23.7
coord: 204..228
e-value: 2.6E-8
score: 34.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..255
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..325
NoneNo IPR availablePANTHERPTHR47487OS06G0651300 PROTEIN-RELATEDcoord: 19..306
NoneNo IPR availablePANTHERPTHR47487:SF8OS06G0651300 PROTEINcoord: 19..306
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 252..290
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 193..232

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g019060.1Lcy03g019060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding