Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTCTCCCACCGAATTATCGCCCCCACCCACGTTCTCTCTCTCTCATATATCTGTCTCTCTTTCAGCACCTCTCATCATCACCATCTCAATTGCCTTATACCACGCCTTCTCTCTCTCTCTTCCGCCATTAAAACTTGGATCAGAGCTCACAACTTCAGTTCCTGCCAAATGGGTATGGAGCTCCTCGAAGAATTCCGCCCACTTACCCCTTTAAGATCATCATCACTTCAACTCCCCAAAGACAAAACCGATCATCATCTTCAACAAGAACCAGAAGAAGAATGCCACACGCCCACCACCGCCGCCAGCCGCCTCAAGCCGTCCATCGAGTGCCCGCCGGCGCCCAAGAAACCTCGCCCTCGCCGAAGAAAATTGAACTTCCCACCGCCGCCATTCTTCGAAGCTCCTCAAGATCTCAATTCTGTGTATATTGAGCTTCAGTTCCCTTCCAAGAAGATCAGACCCATTTCAACCTGATCTTTCTCTCCTACTAATTATTATTGTTTCATTTATGCCTTTTCTTTTCTTTTCCTCTCTAATTTGTTCAAAATCTTTTTTATTATTGATTAACATGGCTGTGTGTATAACTGAACAAATTCACAAACAACCATTGTAATTCAACTCTTTTCCTCTTTGTTTCTTTTCTCTATTATTCAAGTTGGTATACACTGACATCAACTCATTTTAAATTCTTAATTTTTCTTGTCAAAAACATTTTTTTTTTCTTTTTTTGGATGATATAATGTTTTAACGGGTTGAAGTATATTCTAGCCGACTCTTGTGTTAAAAGACCAGTTGAATATATATGATATTGTCCAGTTCGAGTCTGTACGGTCCATAACTTTACCTTTTTTTTTCGCTCTCTCCCTGAACATTACATCGTAGGTAAAGAAAAGGATTTGCACCTATGATTAAGTCATAGATGAATGTAGAAATGTCTTAACCAATTACCTGCCGTCATATTGAGTAATTTTT
mRNA sequence
TCTCTCTCCCACCGAATTATCGCCCCCACCCACGTTCTCTCTCTCTCATATATCTGTCTCTCTTTCAGCACCTCTCATCATCACCATCTCAATTGCCTTATACCACGCCTTCTCTCTCTCTCTTCCGCCATTAAAACTTGGATCAGAGCTCACAACTTCAGTTCCTGCCAAATGGGTATGGAGCTCCTCGAAGAATTCCGCCCACTTACCCCTTTAAGATCATCATCACTTCAACTCCCCAAAGACAAAACCGATCATCATCTTCAACAAGAACCAGAAGAAGAATGCCACACGCCCACCACCGCCGCCAGCCGCCTCAAGCCGTCCATCGAGTGCCCGCCGGCGCCCAAGAAACCTCGCCCTCGCCGAAGAAAATTGAACTTCCCACCGCCGCCATTCTTCGAAGCTCCTCAAGATCTCAATTCTGTGTATATTGAGCTTCAGTTCCCTTCCAAGAAGATCAGACCCATTTCAACCTGATCTTTCTCTCCTACTAATTATTATTGTTTCATTTATGCCTTTTCTTTTCTTTTCCTCTCTAATTTGTTCAAAATCTTTTTTATTATTGATTAACATGGCTGTGTGTATAACTGAACAAATTCACAAACAACCATTGTAATTCAACTCTTTTCCTCTTTGTTTCTTTTCTCTATTATTCAAGTTGGTATACACTGACATCAACTCATTTTAAATTCTTAATTTTTCTTGTCAAAAACATTTTTTTTTTCTTTTTTTGGATGATATAATGTTTTAACGGGTTGAAGTATATTCTAGCCGACTCTTGTGTTAAAAGACCAGTTGAATATATATGATATTGTCCAGTTCGAGTCTGTACGGTCCATAACTTTACCTTTTTTTTTCGCTCTCTCCCTGAACATTACATCGTAGGTAAAGAAAAGGATTTGCACCTATGATTAAGTCATAGATGAATGTAGAAATGTCTTAACCAATTACCTGCCGTCATATTGAGTAATTTTT
Coding sequence (CDS)
ATGGGTATGGAGCTCCTCGAAGAATTCCGCCCACTTACCCCTTTAAGATCATCATCACTTCAACTCCCCAAAGACAAAACCGATCATCATCTTCAACAAGAACCAGAAGAAGAATGCCACACGCCCACCACCGCCGCCAGCCGCCTCAAGCCGTCCATCGAGTGCCCGCCGGCGCCCAAGAAACCTCGCCCTCGCCGAAGAAAATTGAACTTCCCACCGCCGCCATTCTTCGAAGCTCCTCAAGATCTCAATTCTGTGTATATTGAGCTTCAGTTCCCTTCCAAGAAGATCAGACCCATTTCAACCTGA
Protein sequence
MGMELLEEFRPLTPLRSSSLQLPKDKTDHHLQQEPEEECHTPTTAASRLKPSIECPPAPKKPRPRRRKLNFPPPPFFEAPQDLNSVYIELQFPSKKIRPIST
Homology
BLAST of Lcy03g017730 vs. ExPASy TrEMBL
Match:
A0A0A0M005 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426970 PE=4 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 70/100 (70.00%), Postives = 80/100 (80.00%), Query Frame = 0
Query: 1 MGMELLEEFRPLTPLRSSSLQLPKDKTDHHLQQEPEEECHTPTTAASRLKPSIECPPAPK 60
MGME+L+EF PLTPL S +PK KT+ Q++ EEEC TPT AA+RLKP+I CPPAPK
Sbjct: 1 MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPAPK 60
Query: 61 KPRPRRRKLNFPPPPFFEAPQDLNSVYIELQFPSKKIRPI 101
KPRP RRKLNF PPPFFEAPQDLNSVY + PSKKI+PI
Sbjct: 61 KPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPI 100
BLAST of Lcy03g017730 vs. ExPASy TrEMBL
Match:
A0A5N6R7V3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013476 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 5.7e-15
Identity = 54/110 (49.09%), Postives = 70/110 (63.64%), Query Frame = 0
Query: 1 MGMELLEEFRPLTPLRSSSLQLPKDKTDHHLQQ--EPEE---------ECHTPTTAASRL 60
MG+E+LEEFRP+TP+R+ S+ ++ H + EPEE ECHTP ++ L
Sbjct: 1 MGLEILEEFRPVTPIRTISI----TRSSSHATELSEPEETKEVALDDVECHTPKSSVHTL 60
Query: 61 KPSIECPPAPKKPRPRRRKLNFPPPPFFEAPQDLNS-VYIELQFPSKKIR 99
K + CPPAPKKPRP RRKL+ PP F+ P DL S V++ L PSKKIR
Sbjct: 61 KSPLVCPPAPKKPRPARRKLSPPPQRIFQVPHDLASVVFMSLTKPSKKIR 106
BLAST of Lcy03g017730 vs. ExPASy TrEMBL
Match:
A0A1Q3AVG9 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03249 PE=4 SV=1)
HSP 1 Score: 80.1 bits (196), Expect = 5.9e-12
Identity = 52/111 (46.85%), Postives = 64/111 (57.66%), Query Frame = 0
Query: 1 MGMELLEEFRPLTPLRS------SSLQLPKDKTDHHLQQE-----PEEECHTPTTAASRL 60
MG+E+ EEFRP+T +R+ +S +D QE EEEC TP +A S L
Sbjct: 1 MGLEMPEEFRPITTIRTVSTARLTSFSYVSKISDSKKTQELNGLDNEEECQTPKSAESTL 60
Query: 61 KPSIECPPAPKKPRPRRRKLNFPPPPFFEAPQDLNSVYIELQFPSKKIRPI 101
+ CPPAP K RP +RKL PP FFE P DL S++ L PSKKIRPI
Sbjct: 61 --ILVCPPAPSKARPPKRKLCPPPQGFFEVPHDLASLFFSLNTPSKKIRPI 109
BLAST of Lcy03g017730 vs. ExPASy TrEMBL
Match:
A0A2P5EMJ3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_174830 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 1.0e-11
Identity = 50/114 (43.86%), Postives = 70/114 (61.40%), Query Frame = 0
Query: 1 MGMELLEEFRPLTPLRSSSLQLPKDKTD----HHLQQEPEE---------ECHTPTTAAS 60
MG E+LEEFRP+TP+R+ S+ ++++ HL + EE EC TP +A +
Sbjct: 1 MGFEILEEFRPITPMRTISVTKTSNRSNIGLSDHLHKPKEEDVSCVDDVDECRTPRSAEN 60
Query: 61 RLKPS-IECPPAPKKPR--PRRRKLNFPPPPFFEAPQDLNSVYIELQFPSKKIR 99
L+ + + CPPAP+K R P RKL+ P FFE P+DL SV++ L PSKKIR
Sbjct: 61 MLRSAPLVCPPAPRKARAAPASRKLSRPSQRFFEVPEDLTSVFVLLSSPSKKIR 114
BLAST of Lcy03g017730 vs. ExPASy TrEMBL
Match:
A0A2N9GCU9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25207 PE=4 SV=1)
HSP 1 Score: 78.2 bits (191), Expect = 2.2e-11
Identity = 49/104 (47.12%), Postives = 64/104 (61.54%), Query Frame = 0
Query: 1 MGMELLEEFRPLTPLR--SSSLQLPKDKTDHHLQQEPE---EECHTPTTAASRLKP-SIE 60
MG+E+LEEFRP+TP++ S + + + L + E ECHTP + A K +
Sbjct: 1 MGLEILEEFRPVTPIQAISEARRFNHGAGLYDLDETKELDNVECHTPKSPAHTFKSVPLV 60
Query: 61 CPPAPKKPRPRRRKLNFPPPPFFEAPQDLNSVYIELQFPSKKIR 99
CPPAPKKPRP R KL+ P +F+ P DL SV+I L PSKKIR
Sbjct: 61 CPPAPKKPRPARIKLSPPAQGYFKVPHDLASVFISLNNPSKKIR 104
BLAST of Lcy03g017730 vs. NCBI nr
Match:
KAG6589677.1 (hypothetical protein SDJN03_15100, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 157.1 bits (396), Expect = 7.8e-35
Identity = 78/102 (76.47%), Postives = 91/102 (89.22%), Query Frame = 0
Query: 1 MGMELLEEFRPLTPLRSSSLQLPKDKTDHHLQQEPEEECHTPTTAASRLKPSIECPPAPK 60
MGME+LEEFRPLTPLRS SLQLPK+K D ++Q+ +E+C TPT AA+RLKP++ CPPAPK
Sbjct: 1 MGMEVLEEFRPLTPLRSLSLQLPKEKADQNIQE--QEDCQTPTAAATRLKPTMVCPPAPK 60
Query: 61 KPRPRRRKLNFPPPPFFEAPQDLNSVYIELQFPSKKIRPIST 103
KPRP RRKLNF PPPFFEAPQDL+SVYIELQ PSKKI+PI+T
Sbjct: 61 KPRPPRRKLNFLPPPFFEAPQDLSSVYIELQIPSKKIKPITT 100
BLAST of Lcy03g017730 vs. NCBI nr
Match:
KAG6587720.1 (hypothetical protein SDJN03_16285, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 146.7 bits (369), Expect = 1.1e-31
Identity = 74/103 (71.84%), Postives = 87/103 (84.47%), Query Frame = 0
Query: 1 MGMELLEEFRPLTPLR-SSSLQLPKDKTDHHLQQEPEEECHTPTTAASRLKPSIECPPAP 60
MGME+++EFRPLTPLR + SLQ+PK++ D Q++ EEC TPT A SRLKP++ECPPAP
Sbjct: 1 MGMEVMDEFRPLTPLRLTPSLQIPKERRD--FQEQQPEECQTPTAAGSRLKPTMECPPAP 60
Query: 61 KKPRPRRRKLNFPPPPFFEAPQDLNSVYIELQFPSKKIRPIST 103
KKPRP RRKLNF PP FF+APQDL SVY ELQFPSKKI+PIST
Sbjct: 61 KKPRPPRRKLNFQPPSFFDAPQDLKSVYFELQFPSKKIKPIST 101
BLAST of Lcy03g017730 vs. NCBI nr
Match:
KGN65496.1 (hypothetical protein Csa_019987 [Cucumis sativus])
HSP 1 Score: 142.1 bits (357), Expect = 2.6e-30
Identity = 70/100 (70.00%), Postives = 80/100 (80.00%), Query Frame = 0
Query: 1 MGMELLEEFRPLTPLRSSSLQLPKDKTDHHLQQEPEEECHTPTTAASRLKPSIECPPAPK 60
MGME+L+EF PLTPL S +PK KT+ Q++ EEEC TPT AA+RLKP+I CPPAPK
Sbjct: 1 MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPAPK 60
Query: 61 KPRPRRRKLNFPPPPFFEAPQDLNSVYIELQFPSKKIRPI 101
KPRP RRKLNF PPPFFEAPQDLNSVY + PSKKI+PI
Sbjct: 61 KPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPI 100
BLAST of Lcy03g017730 vs. NCBI nr
Match:
KAE8056731.1 (hypothetical protein FH972_013476 [Carpinus fangiana])
HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 54/110 (49.09%), Postives = 70/110 (63.64%), Query Frame = 0
Query: 1 MGMELLEEFRPLTPLRSSSLQLPKDKTDHHLQQ--EPEE---------ECHTPTTAASRL 60
MG+E+LEEFRP+TP+R+ S+ ++ H + EPEE ECHTP ++ L
Sbjct: 1 MGLEILEEFRPVTPIRTISI----TRSSSHATELSEPEETKEVALDDVECHTPKSSVHTL 60
Query: 61 KPSIECPPAPKKPRPRRRKLNFPPPPFFEAPQDLNS-VYIELQFPSKKIR 99
K + CPPAPKKPRP RRKL+ PP F+ P DL S V++ L PSKKIR
Sbjct: 61 KSPLVCPPAPKKPRPARRKLSPPPQRIFQVPHDLASVVFMSLTKPSKKIR 106
BLAST of Lcy03g017730 vs. NCBI nr
Match:
KAF5456423.1 (hypothetical protein F2P56_025911 [Juglans regia])
HSP 1 Score: 88.2 bits (217), Expect = 4.5e-14
Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = 0
Query: 1 MGMELLEEFRPLTPLRSSS------------LQLPKDKTDHHLQQEPEEECHTPTTAASR 60
MG+E++EEFRP+TP+R+ + + D+T HL E +ECHTP ++
Sbjct: 1 MGLEIVEEFRPVTPIRTVPRTRSFDHALEVVVVVNPDETKEHLGDEDHQECHTPKSSEHT 60
Query: 61 LKPSIECPPAPKKPRPRRRKLNFPPPPFFEAPQDLNSVYIEL-QFPSKKIR 99
LK + CPPAPKKPR RRK++ P FFE P DL S+++ L PSKKIR
Sbjct: 61 LKSPLVCPPAPKKPRMARRKMSPTPKRFFEVPHDLASIFMALDNKPSKKIR 111
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0M005 | 1.3e-30 | 70.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426970 PE=4 SV=1 | [more] |
| A0A5N6R7V3 | 5.7e-15 | 49.09 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013476 PE=4 SV=1 | [more] |
| A0A1Q3AVG9 | 5.9e-12 | 46.85 | Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03249 PE=4... | [more] |
| A0A2P5EMJ3 | 1.0e-11 | 43.86 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_174830 PE=4 SV... | [more] |
| A0A2N9GCU9 | 2.2e-11 | 47.12 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25207 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAG6589677.1 | 7.8e-35 | 76.47 | hypothetical protein SDJN03_15100, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6587720.1 | 1.1e-31 | 71.84 | hypothetical protein SDJN03_16285, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN65496.1 | 2.6e-30 | 70.00 | hypothetical protein Csa_019987 [Cucumis sativus] | [more] |
| KAE8056731.1 | 1.2e-14 | 49.09 | hypothetical protein FH972_013476 [Carpinus fangiana] | [more] |
| KAF5456423.1 | 4.5e-14 | 45.05 | hypothetical protein F2P56_025911 [Juglans regia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
