Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCAGAAGAATTTTGATGTTTCCCGTGAAACAACTCAAAATATCATGAACAATCTAAGGCAAAATTCTAAATTGAAAGGTAAAGAACTAGGTGATCTACAAACAGACACAGGAAATGCTGCATCATCTAGCAATTGCAAATGGAACGGAAACAACAGAAACCAACAGACTATGGTCGAGAAGGATGGGGCAGTGATGGATCTGGGTATGTTCAAAGGAACCTCAAATTTGGGTTGTAACACAATCGTTGTTGATCGAGATCAAGAAACAGGGTCGGCTGAGCATACCAACCATTGTATGGATACAGATACTGTCATACTGTCGCAGGCCAAAGAAAATGATGCTGCATTCACTACACAAGTTCCAAATAATCCAGAAGCTGAAACAATCAACAGAATGGAGAAGACAGTGACACGAACACAAGGACCATTACTCCCACAATGGACAGATGAGCAGTTGGATGAGCTCTTTGTATTTGACTGA
mRNA sequence
ATGCCGCAGAAGAATTTTGATGTTTCCCGTGAAACAACTCAAAATATCATGAACAATCTAAGGCAAAATTCTAAATTGAAAGGTAAAGAACTAGGTGATCTACAAACAGACACAGGAAATGCTGCATCATCTAGCAATTGCAAATGGAACGGAAACAACAGAAACCAACAGACTATGGTCGAGAAGGATGGGGCAGTGATGGATCTGGGTATGTTCAAAGGAACCTCAAATTTGGGTTGTAACACAATCGTTGTTGATCGAGATCAAGAAACAGGGTCGGCTGAGCATACCAACCATTGTATGGATACAGATACTGTCATACTGTCGCAGGCCAAAGAAAATGATGCTGCATTCACTACACAAGTTCCAAATAATCCAGAAGCTGAAACAATCAACAGAATGGAGAAGACAGTGACACGAACACAAGGACCATTACTCCCACAATGGACAGATGAGCAGTTGGATGAGCTCTTTGTATTTGACTGA
Coding sequence (CDS)
ATGCCGCAGAAGAATTTTGATGTTTCCCGTGAAACAACTCAAAATATCATGAACAATCTAAGGCAAAATTCTAAATTGAAAGGTAAAGAACTAGGTGATCTACAAACAGACACAGGAAATGCTGCATCATCTAGCAATTGCAAATGGAACGGAAACAACAGAAACCAACAGACTATGGTCGAGAAGGATGGGGCAGTGATGGATCTGGGTATGTTCAAAGGAACCTCAAATTTGGGTTGTAACACAATCGTTGTTGATCGAGATCAAGAAACAGGGTCGGCTGAGCATACCAACCATTGTATGGATACAGATACTGTCATACTGTCGCAGGCCAAAGAAAATGATGCTGCATTCACTACACAAGTTCCAAATAATCCAGAAGCTGAAACAATCAACAGAATGGAGAAGACAGTGACACGAACACAAGGACCATTACTCCCACAATGGACAGATGAGCAGTTGGATGAGCTCTTTGTATTTGACTGA
Protein sequence
MPQKNFDVSRETTQNIMNNLRQNSKLKGKELGDLQTDTGNAASSSNCKWNGNNRNQQTMVEKDGAVMDLGMFKGTSNLGCNTIVVDRDQETGSAEHTNHCMDTDTVILSQAKENDAAFTTQVPNNPEAETINRMEKTVTRTQGPLLPQWTDEQLDELFVFD
Homology
BLAST of Lcy03g017240 vs. ExPASy TrEMBL
Match:
A0A6J1BZ04 (uncharacterized protein LOC111006894 OS=Momordica charantia OX=3673 GN=LOC111006894 PE=4 SV=1)
HSP 1 Score: 189.9 bits (481), Expect = 8.3e-45
Identity = 108/163 (66.26%), Postives = 119/163 (73.01%), Query Frame = 0
Query: 1 MPQKNFDVSRETTQNIMNNLRQNSKLKGKELGDLQTDTGNAASSSNCKWNGNNRNQQTMV 60
MPQKN VSRETT+NIMNNLRQ+SK SSNCK +GNNRNQQT+V
Sbjct: 188 MPQKNLYVSRETTKNIMNNLRQSSK------------------SSNCKGSGNNRNQQTIV 247
Query: 61 EKDGAVMDLGMFKGTSNLGCNTIVVDRDQETGSAEHTNHCMDTDTVILSQAKEND--AAF 120
EKD AVM+ GM KG SNL NT +VD+DQETG E+ N M TDT LSQAKEND AA
Sbjct: 248 EKDSAVMNPGMSKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAAN 307
Query: 121 TTQVPNNPEAETINRMEKTVTRTQGPLLPQWTDEQLDELFVFD 162
TQVP+N EAETIN ++K TRTQGPLLPQWTDEQLDELFVFD
Sbjct: 308 ATQVPHNQEAETINEVKKADTRTQGPLLPQWTDEQLDELFVFD 332
BLAST of Lcy03g017240 vs. ExPASy TrEMBL
Match:
A0A0A0LSW2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025090 PE=4 SV=1)
HSP 1 Score: 189.1 bits (479), Expect = 1.4e-44
Identity = 106/162 (65.43%), Postives = 122/162 (75.31%), Query Frame = 0
Query: 1 MPQKNFDVSRETTQNIMNNLRQNSKLKGKELGDLQTDTGNAASSSNCKWNGNNRNQQTMV 60
MPQ N DVSRE+TQNIMNNL+QNSKL+G L DLQT G AASS N KWN N+Q+ +
Sbjct: 298 MPQMNSDVSRESTQNIMNNLKQNSKLRGNGLDDLQTGKGIAASSRNWKWNETVGNRQS-I 357
Query: 61 EKDGAVMDLGMFKGTSNLGCNTIVVDRDQETGSAEHTNHCMDTDTVILSQAKENDAAF-T 120
EK+G V+D+G+ KGT ++GCNT+ VD+DQ GS E NH M TD AKEN AA T
Sbjct: 358 EKEGGVIDVGISKGTPSVGCNTVHVDQDQGRGSDEPINHPMGTD-----PAKENGAASNT 417
Query: 121 TQVPNNPEAETINRMEKTVTRTQGPLLPQWTDEQLDELFVFD 162
Q+PNN E ETIN M+KTVTRTQ PLLPQWTDEQLDELFVFD
Sbjct: 418 VQLPNNQEVETINEMKKTVTRTQQPLLPQWTDEQLDELFVFD 453
BLAST of Lcy03g017240 vs. ExPASy TrEMBL
Match:
A0A6J1JLK0 (uncharacterized protein LOC111485693 OS=Cucurbita maxima OX=3661 GN=LOC111485693 PE=4 SV=1)
HSP 1 Score: 179.9 bits (455), Expect = 8.6e-42
Identity = 104/160 (65.00%), Postives = 116/160 (72.50%), Query Frame = 0
Query: 3 QKNFDVSRETTQNIMNNLRQNSKLKGKELGDLQTDTGNAASSSNCKWNGNNRNQQTMVEK 62
Q NFDVSRE TQNIMNNLRQNSKL+ LGDLQT GNAASS N K NG N N+Q
Sbjct: 332 QMNFDVSREKTQNIMNNLRQNSKLRRNGLGDLQTGKGNAASSINWKGNGTNSNRQ----- 391
Query: 63 DGAVMDLGMFKGTSNLGCNTIVVDRDQETGSAEHTNHCMDTDTVILSQAKENDAAF-TTQ 122
+DL KGTS++GCNT++VD+DQ+TG E NH M TD+ LSQAKEN AA T +
Sbjct: 392 ---FVDLSTSKGTSSVGCNTLLVDQDQQTGLDEPINHPMGTDSGELSQAKENGAASNTAR 451
Query: 123 VPNNPEAETINRMEKTVTRTQGPLLPQWTDEQLDELFVFD 162
PNN EAE IN M KT TRTQ PLLPQWT+EQLDELF FD
Sbjct: 452 APNNQEAEKINEM-KTATRTQEPLLPQWTEEQLDELFAFD 482
BLAST of Lcy03g017240 vs. ExPASy TrEMBL
Match:
A0A5D3DYT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G001300 PE=4 SV=1)
HSP 1 Score: 177.9 bits (450), Expect = 3.3e-41
Identity = 100/162 (61.73%), Postives = 120/162 (74.07%), Query Frame = 0
Query: 1 MPQKNFDVSRETTQNIMNNLRQNSKLKGKELGDLQTDTGNAASSSNCKWNGNNRNQQTMV 60
M Q N DVSRE+TQNIMNNLRQ+SKL+ LGDL+T G AASSSN N ++Q++V
Sbjct: 332 MQQMNSDVSRESTQNIMNNLRQSSKLRRNRLGDLRTGKGGAASSSNWNCNETVGSRQSVV 391
Query: 61 EKDGAVMDLGMFKGTSNLGCNTIVVDRDQETGSAEHTNHCMDTDTVILSQAKENDAAFTT 120
EK+G V+D+G+ K T ++GCN + VD+DQ GS E NH M TD+ KEN AA +T
Sbjct: 392 EKEGGVIDVGISKRTPSVGCNIVYVDQDQGRGSDEPINHPMGTDS-----TKENGAASST 451
Query: 121 -QVPNNPEAETINRMEKTVTRTQGPLLPQWTDEQLDELFVFD 162
Q+PNN EAETIN M+KTVTRTQ PLLPQWTDEQLDELF FD
Sbjct: 452 AQLPNNQEAETINEMKKTVTRTQQPLLPQWTDEQLDELFEFD 488
BLAST of Lcy03g017240 vs. ExPASy TrEMBL
Match:
A0A1S3BVT0 (uncharacterized protein C17orf53 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494183 PE=4 SV=1)
HSP 1 Score: 177.9 bits (450), Expect = 3.3e-41
Identity = 100/162 (61.73%), Postives = 120/162 (74.07%), Query Frame = 0
Query: 1 MPQKNFDVSRETTQNIMNNLRQNSKLKGKELGDLQTDTGNAASSSNCKWNGNNRNQQTMV 60
M Q N DVSRE+TQNIMNNLRQ+SKL+ LGDL+T G AASSSN N ++Q++V
Sbjct: 299 MQQMNSDVSRESTQNIMNNLRQSSKLRRNRLGDLRTGKGGAASSSNWNCNETVGSRQSVV 358
Query: 61 EKDGAVMDLGMFKGTSNLGCNTIVVDRDQETGSAEHTNHCMDTDTVILSQAKENDAAFTT 120
EK+G V+D+G+ K T ++GCN + VD+DQ GS E NH M TD+ KEN AA +T
Sbjct: 359 EKEGGVIDVGISKRTPSVGCNIVYVDQDQGRGSDEPINHPMGTDS-----TKENGAASST 418
Query: 121 -QVPNNPEAETINRMEKTVTRTQGPLLPQWTDEQLDELFVFD 162
Q+PNN EAETIN M+KTVTRTQ PLLPQWTDEQLDELF FD
Sbjct: 419 AQLPNNQEAETINEMKKTVTRTQQPLLPQWTDEQLDELFEFD 455
BLAST of Lcy03g017240 vs. NCBI nr
Match:
XP_038879213.1 (uncharacterized protein LOC120071176 isoform X1 [Benincasa hispida])
HSP 1 Score: 204.9 bits (520), Expect = 5.2e-49
Identity = 115/162 (70.99%), Postives = 129/162 (79.63%), Query Frame = 0
Query: 1 MPQKNFDVSRETTQNIMNNLRQNSKLKGKELGDLQTDTGNAASSSNCKWNGNNRNQQTMV 60
MPQ N DVSRETTQNIMNNLRQ +KL+G ELGDLQT GNAASSSN K NG RN+ ++V
Sbjct: 298 MPQMNVDVSRETTQNIMNNLRQ-TKLRGNELGDLQTGKGNAASSSNSKGNGTIRNRPSVV 357
Query: 61 EKDGAVMDLGMFKGTSNLGCNTIVVDRDQETGSAEHTNHCMDTDTVILSQAKENDAAF-T 120
EK+ AV+D+G KGTS++G T+ VD+DQETG E NH M TD LSQAKEN AA T
Sbjct: 358 EKERAVIDVGTSKGTSSVGRYTVDVDQDQETGLDEPINHPMGTDPGELSQAKENGAASNT 417
Query: 121 TQVPNNPEAETINRMEKTVTRTQGPLLPQWTDEQLDELFVFD 162
QVPNN EAETIN M+KTVTRTQ P+LPQWTDEQLDELFVFD
Sbjct: 418 AQVPNNQEAETINEMKKTVTRTQEPVLPQWTDEQLDELFVFD 458
BLAST of Lcy03g017240 vs. NCBI nr
Match:
XP_038879214.1 (uncharacterized protein LOC120071176 isoform X2 [Benincasa hispida])
HSP 1 Score: 204.9 bits (520), Expect = 5.2e-49
Identity = 115/162 (70.99%), Postives = 129/162 (79.63%), Query Frame = 0
Query: 1 MPQKNFDVSRETTQNIMNNLRQNSKLKGKELGDLQTDTGNAASSSNCKWNGNNRNQQTMV 60
MPQ N DVSRETTQNIMNNLRQ +KL+G ELGDLQT GNAASSSN K NG RN+ ++V
Sbjct: 137 MPQMNVDVSRETTQNIMNNLRQ-TKLRGNELGDLQTGKGNAASSSNSKGNGTIRNRPSVV 196
Query: 61 EKDGAVMDLGMFKGTSNLGCNTIVVDRDQETGSAEHTNHCMDTDTVILSQAKENDAAF-T 120
EK+ AV+D+G KGTS++G T+ VD+DQETG E NH M TD LSQAKEN AA T
Sbjct: 197 EKERAVIDVGTSKGTSSVGRYTVDVDQDQETGLDEPINHPMGTDPGELSQAKENGAASNT 256
Query: 121 TQVPNNPEAETINRMEKTVTRTQGPLLPQWTDEQLDELFVFD 162
QVPNN EAETIN M+KTVTRTQ P+LPQWTDEQLDELFVFD
Sbjct: 257 AQVPNNQEAETINEMKKTVTRTQEPVLPQWTDEQLDELFVFD 297
BLAST of Lcy03g017240 vs. NCBI nr
Match:
XP_022134685.1 (uncharacterized protein LOC111006894 [Momordica charantia])
HSP 1 Score: 189.9 bits (481), Expect = 1.7e-44
Identity = 108/163 (66.26%), Postives = 119/163 (73.01%), Query Frame = 0
Query: 1 MPQKNFDVSRETTQNIMNNLRQNSKLKGKELGDLQTDTGNAASSSNCKWNGNNRNQQTMV 60
MPQKN VSRETT+NIMNNLRQ+SK SSNCK +GNNRNQQT+V
Sbjct: 188 MPQKNLYVSRETTKNIMNNLRQSSK------------------SSNCKGSGNNRNQQTIV 247
Query: 61 EKDGAVMDLGMFKGTSNLGCNTIVVDRDQETGSAEHTNHCMDTDTVILSQAKEND--AAF 120
EKD AVM+ GM KG SNL NT +VD+DQETG E+ N M TDT LSQAKEND AA
Sbjct: 248 EKDSAVMNPGMSKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAAN 307
Query: 121 TTQVPNNPEAETINRMEKTVTRTQGPLLPQWTDEQLDELFVFD 162
TQVP+N EAETIN ++K TRTQGPLLPQWTDEQLDELFVFD
Sbjct: 308 ATQVPHNQEAETINEVKKADTRTQGPLLPQWTDEQLDELFVFD 332
BLAST of Lcy03g017240 vs. NCBI nr
Match:
XP_004137555.1 (uncharacterized protein C17orf53 homolog isoform X1 [Cucumis sativus] >KGN63877.1 hypothetical protein Csa_013470 [Cucumis sativus])
HSP 1 Score: 189.1 bits (479), Expect = 2.9e-44
Identity = 106/162 (65.43%), Postives = 122/162 (75.31%), Query Frame = 0
Query: 1 MPQKNFDVSRETTQNIMNNLRQNSKLKGKELGDLQTDTGNAASSSNCKWNGNNRNQQTMV 60
MPQ N DVSRE+TQNIMNNL+QNSKL+G L DLQT G AASS N KWN N+Q+ +
Sbjct: 298 MPQMNSDVSRESTQNIMNNLKQNSKLRGNGLDDLQTGKGIAASSRNWKWNETVGNRQS-I 357
Query: 61 EKDGAVMDLGMFKGTSNLGCNTIVVDRDQETGSAEHTNHCMDTDTVILSQAKENDAAF-T 120
EK+G V+D+G+ KGT ++GCNT+ VD+DQ GS E NH M TD AKEN AA T
Sbjct: 358 EKEGGVIDVGISKGTPSVGCNTVHVDQDQGRGSDEPINHPMGTD-----PAKENGAASNT 417
Query: 121 TQVPNNPEAETINRMEKTVTRTQGPLLPQWTDEQLDELFVFD 162
Q+PNN E ETIN M+KTVTRTQ PLLPQWTDEQLDELFVFD
Sbjct: 418 VQLPNNQEVETINEMKKTVTRTQQPLLPQWTDEQLDELFVFD 453
BLAST of Lcy03g017240 vs. NCBI nr
Match:
XP_022988449.1 (uncharacterized protein LOC111485693, partial [Cucurbita maxima])
HSP 1 Score: 179.9 bits (455), Expect = 1.8e-41
Identity = 104/160 (65.00%), Postives = 116/160 (72.50%), Query Frame = 0
Query: 3 QKNFDVSRETTQNIMNNLRQNSKLKGKELGDLQTDTGNAASSSNCKWNGNNRNQQTMVEK 62
Q NFDVSRE TQNIMNNLRQNSKL+ LGDLQT GNAASS N K NG N N+Q
Sbjct: 332 QMNFDVSREKTQNIMNNLRQNSKLRRNGLGDLQTGKGNAASSINWKGNGTNSNRQ----- 391
Query: 63 DGAVMDLGMFKGTSNLGCNTIVVDRDQETGSAEHTNHCMDTDTVILSQAKENDAAF-TTQ 122
+DL KGTS++GCNT++VD+DQ+TG E NH M TD+ LSQAKEN AA T +
Sbjct: 392 ---FVDLSTSKGTSSVGCNTLLVDQDQQTGLDEPINHPMGTDSGELSQAKENGAASNTAR 451
Query: 123 VPNNPEAETINRMEKTVTRTQGPLLPQWTDEQLDELFVFD 162
PNN EAE IN M KT TRTQ PLLPQWT+EQLDELF FD
Sbjct: 452 APNNQEAEKINEM-KTATRTQEPLLPQWTEEQLDELFAFD 482
BLAST of Lcy03g017240 vs. TAIR 10
Match:
AT1G48580.1 (unknown protein; Has 91 Blast hits to 91 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). )
HSP 1 Score: 53.1 bits (126), Expect = 2.3e-07
Identity = 49/163 (30.06%), Postives = 70/163 (42.94%), Query Frame = 0
Query: 6 FDVSRETTQNIMNNLRQNSKLKGKELGDLQ-TDTGNAASSSNCKWNGNNRN------QQT 65
F V + TTQ IMNNLRQN+K + L D++ D A S + G +N +QT
Sbjct: 306 FSVEQSTTQGIMNNLRQNAKGSSEALHDIEMVDINPAEGSKSSPKKGVTKNHCEVRMEQT 365
Query: 66 MVEKDGAVMDLGMFKGTSNLGCNTIVVDRDQETGSAEHTNHCMDTDTVILSQAKENDAAF 125
++ K ++ + D ET A+ SQ E ++
Sbjct: 366 LLGKHDSISQTE----------QQLYEDVATETDIADCIRPAKQIRRSSQSQIDEQESV- 425
Query: 126 TTQVPNNPEAETINRMEKTVTRTQGPLLPQWTDEQLDELFVFD 162
+ N E T + K+ + LPQWTDEQL+ELF FD
Sbjct: 426 ---MGNPDEVTTRTTIHKSQSMASTISLPQWTDEQLEELFAFD 454
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1BZ04 | 8.3e-45 | 66.26 | uncharacterized protein LOC111006894 OS=Momordica charantia OX=3673 GN=LOC111006... | [more] |
| A0A0A0LSW2 | 1.4e-44 | 65.43 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025090 PE=4 SV=1 | [more] |
| A0A6J1JLK0 | 8.6e-42 | 65.00 | uncharacterized protein LOC111485693 OS=Cucurbita maxima OX=3661 GN=LOC111485693... | [more] |
| A0A5D3DYT5 | 3.3e-41 | 61.73 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A1S3BVT0 | 3.3e-41 | 61.73 | uncharacterized protein C17orf53 homolog isoform X2 OS=Cucumis melo OX=3656 GN=L... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_038879213.1 | 5.2e-49 | 70.99 | uncharacterized protein LOC120071176 isoform X1 [Benincasa hispida] | [more] |
| XP_038879214.1 | 5.2e-49 | 70.99 | uncharacterized protein LOC120071176 isoform X2 [Benincasa hispida] | [more] |
| XP_022134685.1 | 1.7e-44 | 66.26 | uncharacterized protein LOC111006894 [Momordica charantia] | [more] |
| XP_004137555.1 | 2.9e-44 | 65.43 | uncharacterized protein C17orf53 homolog isoform X1 [Cucumis sativus] >KGN63877.... | [more] |
| XP_022988449.1 | 1.8e-41 | 65.00 | uncharacterized protein LOC111485693, partial [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G48580.1 | 2.3e-07 | 30.06 | unknown protein; Has 91 Blast hits to 91 proteins in 40 species: Archae - 0; Bac... | [more] |
