Lcy01g014160 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g014160
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionF-box/kelch-repeat protein
LocationChr01: 35660589 .. 35662699 (+)
RNA-Seq ExpressionLcy01g014160
SyntenyLcy01g014160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCAATTTAGGGCAAGACCCATAGGTCCAAGGCCACGAAAAAGCCAGCCCTTTGGAGTCTTGGGTGTCGAGGTCTAGTCGAGGGGTGTGTCCGAATTAACATAAGTATCAGAGTGTGTTGAAGTACCACAAATCTTTTTAAATGCTAGCTCGGACAATCTCTAGGTGCTCGGACCGAACCGGGACAACCCGACCAGATGTTTCCACCAACACATAAAATTTAAAGCAAATTACAAATTTGAAAATTGAGTTTAAAAAGAAACTAAATTGAATAAAATTAGAAACAATTAATTAATTATTAATTAATTAATTAAGTGATTTTTATTTTGGCAATTCCTTAATTACGGGAACACAAAGACGACAATTATCGTCTCCTTCGTCTCTTGGTAAGCAGTTGCGAGGAAAATCTCCTTCTGACGTGGTCTGGTTCTGTCAGTTTTATCCTTTTCTTTTCGCCATTCCTATTTTTGGGTTTCTATAAATCCCCTTCAATCTCAATCCCACCCTAAACCAACCACACCTTCTTCAATTCTTTCAAATCTCTCAACAACTCCCTCTGCTACTTCTTCTCTTGCAGGTAATCTTCTTTTTCTGATCTTCAATCTGCTCTTTTCATTGTGTTTTTTCCCCTTTCGATTGGGGTTTGTGTTTGCTGCAGATCTGCCGCCCTTCTCTTTCTTGTTCTCTTTAAGTTCAGTTCAGTTGTTTCTTTGCATCCTTGGAGTTTAGATTTCCGTGGTTCTTGTTTGGAATTTTTGGTAGGTGGGGTTGTGTGAATTGGCTTCTTTGTACTTGTGCAGCTTGTTAAATCCTCTGCAATGTTGTGTCGTTGTGTTTCTGTGACTGTTTGTGCTATATGCCATTGTTTTGCTTGCTTTGGATTGTGCTGTTTATGGGTGTCGATTTTTGAGCTTCTTTAATTGTCGGCTCATTTTTGGTCTGGTAATTGAGCTCCTATGTCTGTCGTTTCTGCTGATTGTGATTCTGACGAAATGGAACTTTTGTTAGTCTTGGAGAACTGTATGAAGCTGCTTTCGTTCTGAGAATTCTGTGGCTTAACTTCTTTGGTTCATCTTGCTTTCCGCGATGCTACAATGTTGAGGGATTCTTTTTACTTTTTGCTCAAGTTCGAGTTCGGTGTCTGTGTGAAAGATTAATTGATTCCAGATCCGGTTGAAGAGCTTTTTCCTTGTACCCTCTTGAAGGGGACTGTTGGATCCAATTTGTTGGCTGCTTTGCTTGCATTTCCCTCCATATTTTTGCCATCCTGGGCTTCTACTTCATTATGAAGAAGCTGCTGAGTTATTTCCTGTAAATTTTGATCCTCCCCGTACATACATGCATACCCTCGCCCATTAATTACTGAATAAGAGAACGTGTAGAACTCAGTACTGGGCGATGGACGAGTCTTTTTTGTCCATGCCCGTGTCACCTGCTTGTTTATGCGTGTGATTTTTCTGTCTATTATCTTTTATTTTCTTTGTTTCTCTTTCTACTCTATTGAAAGATAAGCATAAATGATATGAACTGGTTTTGGTTTTACATTCTTTTTGTATCCTTTTAAGTCTTATCTTTTCTTAGACTCCATAATTCTTGTGATATGTGCACCTAAAGTAACAGTCAGCCAATCTGTATTTCCCTTTGATGTTAAGTGTGTAATCTTGGGATTTAGTTTTCCCAACTCATTTATGATCTTTTTTTCAGACTTTCAGTTTCCCATTTTTGATATGGAAGTTGTCGGGGGCTAACTTGGCAAGTTCTATGGCATTGACTGGTATGTTTGTCTTTCCTCTTCAATTCCGACGCTGTGCATATGCTCATCAGCTTCCACTTTCACAAAAACTAGATTTAAGCTTTATGCTGCATGATGTGTAGGTAATTTGGCAATGCACAGAGGAAGAGGGAGCTCTATAAAGTTGCAGAACATCACTCATACTGCCATATCTAGTAAACATAAGCGTGAATTTTCTGGCATGGACTTTGAATCGGACTGGACAAGGCACAGAAAGTCCTCTGTATTTGCTGCTCAAGTGATCCGTTCTGCAACTTCCTTTATGCCTTGGTCTTGCAGAATCCCAATTGGTGAAGGATATCACGAATTTCTTTAA

mRNA sequence

ATGAGCCAATTTAGGGCAAGACCCATAGGTCCAAGGCCACGAAAAAGCCAGCCCTTTGGAGTCTTGGGTGTCGAGACTTTCAGTTTCCCATTTTTGATATGGAAGTTGTCGGGGGCTAACTTGGCAAGTTCTATGGCATTGACTGGTAATTTGGCAATGCACAGAGGAAGAGGGAGCTCTATAAAGTTGCAGAACATCACTCATACTGCCATATCTAGTAAACATAAGCGTGAATTTTCTGGCATGGACTTTGAATCGGACTGGACAAGGCACAGAAAGTCCTCTGTATTTGCTGCTCAAGTGATCCGTTCTGCAACTTCCTTTATGCCTTGGTCTTGCAGAATCCCAATTGGTGAAGGATATCACGAATTTCTTTAA

Coding sequence (CDS)

ATGAGCCAATTTAGGGCAAGACCCATAGGTCCAAGGCCACGAAAAAGCCAGCCCTTTGGAGTCTTGGGTGTCGAGACTTTCAGTTTCCCATTTTTGATATGGAAGTTGTCGGGGGCTAACTTGGCAAGTTCTATGGCATTGACTGGTAATTTGGCAATGCACAGAGGAAGAGGGAGCTCTATAAAGTTGCAGAACATCACTCATACTGCCATATCTAGTAAACATAAGCGTGAATTTTCTGGCATGGACTTTGAATCGGACTGGACAAGGCACAGAAAGTCCTCTGTATTTGCTGCTCAAGTGATCCGTTCTGCAACTTCCTTTATGCCTTGGTCTTGCAGAATCCCAATTGGTGAAGGATATCACGAATTTCTTTAA

Protein sequence

MSQFRARPIGPRPRKSQPFGVLGVETFSFPFLIWKLSGANLASSMALTGNLAMHRGRGSSIKLQNITHTAISSKHKREFSGMDFESDWTRHRKSSVFAAQVIRSATSFMPWSCRIPIGEGYHEFL
Homology
BLAST of Lcy01g014160 vs. ExPASy TrEMBL
Match: A0A0A0KD56 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365200 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 6.3e-40
Identity = 88/104 (84.62%), Postives = 89/104 (85.58%), Query Frame = 0

Query: 22  LGVETFSFPFLIWKLSGANLASSMALTGNLAMHRGRGSSIKLQNITHTAISSKHKREFSG 81
           L + TFSFPF IWKL GANLASSMALTG L MHRGR S IKLQNITHTA SSKHKREF G
Sbjct: 110 LFMRTFSFPFFIWKLWGANLASSMALTGILTMHRGRDSPIKLQNITHTATSSKHKREF-G 169

Query: 82  MDFESDWTRHRKSSVFAAQVIRSATSFMPWSCRIPIGEGYHEFL 126
           MDFESDWTRH KSS FAA VIRSATSFM WSCRIPI EGYHEFL
Sbjct: 170 MDFESDWTRHVKSSAFAAPVIRSATSFMRWSCRIPISEGYHEFL 212

BLAST of Lcy01g014160 vs. ExPASy TrEMBL
Match: A0A5A7VCL2 (F-box/kelch-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00410 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.4e-25
Identity = 63/77 (81.82%), Postives = 64/77 (83.12%), Query Frame = 0

Query: 49  GNLAMHRGRGSSIKLQNITHTAISSKHKREFSGMDFESDWTRHRKSSVFAAQVIRSATSF 108
           G L MHRGR +  KLQNITHTAISSK KREF GMDFESDWTRH KSS FAA VIRSATSF
Sbjct: 39  GILTMHRGRDNPKKLQNITHTAISSKQKREF-GMDFESDWTRHVKSSAFAAPVIRSATSF 98

Query: 109 MPWSCRIPIGEGYHEFL 126
           M WSCRIPI EGY EFL
Sbjct: 99  MRWSCRIPISEGYQEFL 114

BLAST of Lcy01g014160 vs. ExPASy TrEMBL
Match: A0A5J5ASN4 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033169 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.0e-18
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 0

Query: 41  LASSMALTGNLAMHRGRGSSIKLQ-NITHTAISSKH--KREFSGMDFESDWTRHRKSSVF 100
           ++S MAL    AM  GR +S KL+ +IT    + K+  +   +GMDFESDWT+HRKSS F
Sbjct: 1   MSSCMALADTWAMCGGRNNSGKLEIDITLDRTTKKNYLRDRTTGMDFESDWTKHRKSSAF 60

Query: 101 AAQVIRSATSFMPWSCRIPIGEGYHEFL 126
            A+VIRSATSFMPWSC+IPI EGYHEFL
Sbjct: 61  TAEVIRSATSFMPWSCKIPISEGYHEFL 88

BLAST of Lcy01g014160 vs. ExPASy TrEMBL
Match: A0A5J5AWB6 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033166 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.8e-18
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 0

Query: 41  LASSMALTGNLAMHRGRGSSIKLQ-NITHTAISSKH--KREFSGMDFESDWTRHRKSSVF 100
           ++SSMAL    AM  GR +S KL+ +IT    + K+  +   + MDFESDWT+HRKSS F
Sbjct: 1   MSSSMALADTWAMCGGRNNSGKLEIDITLDRTTKKNYLRNRTTDMDFESDWTKHRKSSAF 60

Query: 101 AAQVIRSATSFMPWSCRIPIGEGYHEFL 126
            A+VIRSATSFMPWSC+IPI EGYHEFL
Sbjct: 61  TAEVIRSATSFMPWSCKIPICEGYHEFL 88

BLAST of Lcy01g014160 vs. ExPASy TrEMBL
Match: A0A444WZZ5 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g066056 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 8.2e-16
Identity = 48/87 (55.17%), Postives = 60/87 (68.97%), Query Frame = 0

Query: 41  LASSMALTGNLAMHRG--RGSSIKLQNITHTAISSKHKREFSGMDFESDWTRHRKSSVFA 100
           L SSMA T   AM +G  + SS++  ++T    S+        M+FESDWT+HRKSS + 
Sbjct: 2   LPSSMAYTDLWAMCKGGYKFSSLRNNSLTKINQSNHSSSRTCVMEFESDWTKHRKSSAYT 61

Query: 101 AQVIRSATSFMPWSCRIPIGEGYHEFL 126
           A VIRSATS +PWSCR+PIGEGYHEFL
Sbjct: 62  AHVIRSATSILPWSCRVPIGEGYHEFL 88

BLAST of Lcy01g014160 vs. NCBI nr
Match: KAE8647234.1 (hypothetical protein Csa_019002, partial [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 3.8e-39
Identity = 87/100 (87.00%), Postives = 87/100 (87.00%), Query Frame = 0

Query: 26  TFSFPFLIWKLSGANLASSMALTGNLAMHRGRGSSIKLQNITHTAISSKHKREFSGMDFE 85
           TFSFPF IWKL GANLASSMALTG L MHRGR S IKLQNITHTA SSKHKREF GMDFE
Sbjct: 1   TFSFPFFIWKLWGANLASSMALTGILTMHRGRDSPIKLQNITHTATSSKHKREF-GMDFE 60

Query: 86  SDWTRHRKSSVFAAQVIRSATSFMPWSCRIPIGEGYHEFL 126
           SDWTRH KSS FAA VIRSATSFM WSCRIPI EGYHEFL
Sbjct: 61  SDWTRHVKSSAFAAPVIRSATSFMRWSCRIPISEGYHEFL 99

BLAST of Lcy01g014160 vs. NCBI nr
Match: KAG7020136.1 (hypothetical protein SDJN02_16818 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 2.1e-37
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 0

Query: 34  WKLSGANLASSMALTGNLAMHRGRGSSIKLQNITHTAISSKHKREFSGMDFESDWTRHRK 93
           WK  GANLASSMALTG LAMHR RG+SIKLQ+ITHTAISSK+ REFSGMDFESDWTRHRK
Sbjct: 60  WKSWGANLASSMALTGILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRK 119

Query: 94  SSVFAAQVIRSATSFMPWSCRIPIGEGYHEFL 126
           SS FAAQVIRSATSFMPWSCRIPI +GYHEFL
Sbjct: 120 SSAFAAQVIRSATSFMPWSCRIPISKGYHEFL 151

BLAST of Lcy01g014160 vs. NCBI nr
Match: KAG6585216.1 (hypothetical protein SDJN03_17949, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.0 bits (419), Expect = 2.1e-37
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 0

Query: 34  WKLSGANLASSMALTGNLAMHRGRGSSIKLQNITHTAISSKHKREFSGMDFESDWTRHRK 93
           WK  GANLASSMALTG LAMHR RG+SIKLQ+ITHTAISSK+ REFSGMDFESDWTRHRK
Sbjct: 68  WKSWGANLASSMALTGILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRK 127

Query: 94  SSVFAAQVIRSATSFMPWSCRIPIGEGYHEFL 126
           SS FAAQVIRSATSFMPWSCRIPI +GYHEFL
Sbjct: 128 SSAFAAQVIRSATSFMPWSCRIPISKGYHEFL 159

BLAST of Lcy01g014160 vs. NCBI nr
Match: KAA0064737.1 (F-box/kelch-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 9.0e-25
Identity = 63/77 (81.82%), Postives = 64/77 (83.12%), Query Frame = 0

Query: 49  GNLAMHRGRGSSIKLQNITHTAISSKHKREFSGMDFESDWTRHRKSSVFAAQVIRSATSF 108
           G L MHRGR +  KLQNITHTAISSK KREF GMDFESDWTRH KSS FAA VIRSATSF
Sbjct: 39  GILTMHRGRDNPKKLQNITHTAISSKQKREF-GMDFESDWTRHVKSSAFAAPVIRSATSF 98

Query: 109 MPWSCRIPIGEGYHEFL 126
           M WSCRIPI EGY EFL
Sbjct: 99  MRWSCRIPISEGYQEFL 114

BLAST of Lcy01g014160 vs. NCBI nr
Match: KAG2706649.1 (hypothetical protein I3760_05G113500 [Carya illinoinensis] >KAG6653944.1 hypothetical protein CIPAW_05G111800 [Carya illinoinensis] >KAG6712544.1 hypothetical protein I3842_05G109000 [Carya illinoinensis] >KAG7978834.1 hypothetical protein I3843_05G101700 [Carya illinoinensis])

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19
Identity = 56/82 (68.29%), Postives = 62/82 (75.61%), Query Frame = 0

Query: 45  MALTGNLAMHRGRGSSIKLQNITHTAISSKH-KREFSGMDFESDWTRHRKSSVFAAQVIR 104
           MALT   AM  G   S+ L++I        H K++ SGM+FESDWTRHRKSS FAAQVIR
Sbjct: 1   MALTDIWAM-CGETDSVCLESILRRITGPNHSKKKTSGMEFESDWTRHRKSSAFAAQVIR 60

Query: 105 SATSFMPWSCRIPIGEGYHEFL 126
           SATSFMPWSCRIPIGEGYHEFL
Sbjct: 61  SATSFMPWSCRIPIGEGYHEFL 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KD566.3e-4084.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365200 PE=4 SV=1[more]
A0A5A7VCL24.4e-2581.82F-box/kelch-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A5J5ASN44.0e-1860.23Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033169 PE=4 SV=1[more]
A0A5J5AWB68.8e-1860.23Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033166 PE=4 SV=1[more]
A0A444WZZ58.2e-1655.17Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g066056 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8647234.13.8e-3987.00hypothetical protein Csa_019002, partial [Cucumis sativus][more]
KAG7020136.12.1e-3788.04hypothetical protein SDJN02_16818 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6585216.12.1e-3788.04hypothetical protein SDJN03_17949, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0064737.19.0e-2581.82F-box/kelch-repeat protein [Cucumis melo var. makuwa][more]
KAG2706649.11.9e-1968.29hypothetical protein I3760_05G113500 [Carya illinoinensis] >KAG6653944.1 hypothe... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g014160.1Lcy01g014160.1mRNA