Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTGGTTGGATGCTGCATGGCGGAAGGAGACGCTGGTTACTAGTCTGGGGTGGTCATTGAGAGAGCAGGATGGAACTATATGGGCTGAAAATTCCAAGAATGGGGGATTTAGCTTAAATAGTCTACATGCAGAGGGTAAGGCCCTGCTATGGGGTTTGGAATGTGCGAGGGAGATTGGAATTCAAGAGTTGCAGTTGAAATCCGATGCTTTGCGAATGGTGAATATAGTCAACGGAAAGGAGAAATGTCCAGTGGACTTTGAACCTGTTTTTGATTGTATTCAACACTGTCTCGATGCTTTTAATTCTTGCAGTCTGATATTTGTGAGGAGAGAGTTCAATGAGAGAGCTCATATGTTGGCCAAGAATGGTCTGTGTATTTAATTCTCTTTCGAATAAAGCTTTCGCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAACATTACAATCCAACTTGGGTATAAACATACCCAAGATTTTTTAACTTTCAATGCTCTAGTTTATTTTTCCTTTATTTTACGAGTGATAATATATGTATACCTATCAAATTAACATATAAAGTATTTTAAACTTGATTAATAAAGTCTATTTTGACCCATTATATCATCATTTTATAAATTATTTTAATATAATAAAAACTTAATTAAGAAAAAAAGGGAAATAATTAATTTAAAATTTTACCACTAAACTTTTCACGTGATATCAATTTATATCCTATACTCTCAATTTCAACAAATTGAACCTTAGACTTTGTTAAATGTTGCAATTTCTACCATCTATTCAATTTTGGTTAATTCACTCATTCATTTTAACAGGGGGTTAAAGTCTTCGAAACTAATGAATTTCAATAATATCAAGTATTGGACAAATTTAAATTTGATTATTGCACAAATTAATCATCCAATAATAACTTTGTAAAAACTCACAAATTTGAAGAAAAATTTACCTCTAATGATTTTTTCTTTGTAATTTTATCAATTTTTATGTCATACATTGAAAGCATATGTGGAAATATCTTTTTTATGAATTTTCAAACAAATATTTATTAGAGGATAAAAATTGCAACACGTTTTTAAGTTTAAGGTTAAGAGATTGCAACCTTTATCTAAATTTATAGTGCAGTTTGATAAAATTGAAAGTTTATGATAAAAATAGATACAATTTGACACGAAATTGGTTAAAAAAAAAAAAAAGAAGAAACTATACATAAAAAGAAGAAATTGAAGCAAAACAATAAACATCAGGCATTGTATATTGGACCTTTTTTTTTATTATTAATATCATAATTTTTAGAACTTACTATTGAAATAGATTTATTTTGAAACTTATTATAAAAATAGTGTAGCTTTAAATTATGCTTGCAAGAGACGGCCTGTTTAGAGGAGATGGGTGGGTTAAATTTCTGTGATATGGAAAGCTTTAACAAAGCTTTACTGGCGAAACAGGTGTGACATCTATTTATAAATCCAGATTAATTAGTCTCAAAGGTAATAAAAGGGCGGTATGCGAATCAAAACTCCCTTTTACATGCACCAATTAAAGCCAATTGTTCTGTTTTCTAGTGGGGATTTGTATGGGCAAGAGATCTTTTACAAAGTGGCATGAGAAAACAGATTGGAAATGGTAAATCTACATATTTTCTCAAATATCCTTGGACGCCCAAGGTGAGCACTTTCAAGCCAATCCCAATTCTTGAGATTGATTTACAGGAGAATGTTCTAGTTGCTGATTTCATTACGCCAACAATGGAATGGAATGTGAGCAAATCTATACCATATTGA
mRNA sequence
ATGATGTGGTTGGATGCTGCATGGCGGAAGGAGACGCTGGTTACTAGTCTGGGGTGGTCATTGAGAGAGCAGGATGGAACTATATGGGCTGAAAATTCCAAGAATGGGGGATTTAGCTTAAATAGTCTACATGCAGAGGGTAAGGCCCTGCTATGGGGTTTGGAATGTGCGAGGGAGATTGGAATTCAAGAGTTGCAGTTGAAATCCGATGCTTTGCGAATGTGGGGATTTGTATGGGCAAGAGATCTTTTACAAAGTGGCATGAGAAAACAGATTGGAAATGGTAAATCTACATATTTTCTCAAATATCCTTGGACGCCCAAGGTGAGCACTTTCAAGCCAATCCCAATTCTTGAGATTGATTTACAGGAGAATGTTCTAGTTGCTGATTTCATTACGCCAACAATGGAATGGAATGTGAGCAAATCTATACCATATTGA
Coding sequence (CDS)
ATGATGTGGTTGGATGCTGCATGGCGGAAGGAGACGCTGGTTACTAGTCTGGGGTGGTCATTGAGAGAGCAGGATGGAACTATATGGGCTGAAAATTCCAAGAATGGGGGATTTAGCTTAAATAGTCTACATGCAGAGGGTAAGGCCCTGCTATGGGGTTTGGAATGTGCGAGGGAGATTGGAATTCAAGAGTTGCAGTTGAAATCCGATGCTTTGCGAATGTGGGGATTTGTATGGGCAAGAGATCTTTTACAAAGTGGCATGAGAAAACAGATTGGAAATGGTAAATCTACATATTTTCTCAAATATCCTTGGACGCCCAAGGTGAGCACTTTCAAGCCAATCCCAATTCTTGAGATTGATTTACAGGAGAATGTTCTAGTTGCTGATTTCATTACGCCAACAATGGAATGGAATGTGAGCAAATCTATACCATATTGA
Protein sequence
MMWLDAAWRKETLVTSLGWSLREQDGTIWAENSKNGGFSLNSLHAEGKALLWGLECAREIGIQELQLKSDALRMWGFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNVSKSIPY
Homology
BLAST of Lcy01g006480 vs. ExPASy TrEMBL
Match:
A0A803Q8J4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 60.5 bits (145), Expect = 6.9e-06
Identity = 31/74 (41.89%), Postives = 40/74 (54.05%), Query Frame = 0
Query: 69 SDALRMWGFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLV 128
+ +L G W R+LL+ G+RK++GNG S PW P F PI N +V
Sbjct: 1349 ASSLTWQGICWGRELLKKGIRKKVGNGFSISCANDPWIPGNLIFTPI---FYSGNPNSVV 1408
Query: 129 ADFITPTMEWNVSK 143
AD+ITP EWN SK
Sbjct: 1409 ADYITPDREWNFSK 1419
BLAST of Lcy01g006480 vs. ExPASy TrEMBL
Match:
A0A803NM27 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 60.5 bits (145), Expect = 6.9e-06
Identity = 32/72 (44.44%), Postives = 38/72 (52.78%), Query Frame = 0
Query: 71 ALRMWGFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVAD 130
+L GF W R+LL+ G+R Q+GNG PW P S F PI VAD
Sbjct: 1327 SLTWQGFCWGRELLKKGLRLQVGNGFDIACATDPWIPGNSIFTPIYFTGAPTN---TVAD 1386
Query: 131 FITPTMEWNVSK 143
+ITP EWNVSK
Sbjct: 1387 YITPEKEWNVSK 1395
BLAST of Lcy01g006480 vs. ExPASy TrEMBL
Match:
A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 0
Query: 76 GFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPT 135
GF+W RDLL G+R ++GNG + PW P+ +TFKP+ L + VA FIT
Sbjct: 1003 GFLWGRDLLVKGLRLRVGNGSTIKAFSDPWLPRPTTFKPLRFNNGAL--DTTVASFITAD 1062
Query: 136 MEWNVS 142
W+V+
Sbjct: 1063 GNWDVT 1066
BLAST of Lcy01g006480 vs. ExPASy TrEMBL
Match:
A0A5P1EL44 (Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F7380 PE=4 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 2.9e-04
Identity = 40/134 (29.85%), Postives = 58/134 (43.28%), Query Frame = 0
Query: 29 WAE---NSKNGGFSLNSLHAEGKALL----WGLECAREIGIQEL--------------QL 88
WAE N +GG L +ALL W + + ++ L ++
Sbjct: 534 WAELCRNKWDGGLGFRDLELFNQALLAKTYWRIMHSAHSLVRRLLQAKYLPNQEWLEGRV 593
Query: 89 KSDALRMW-GFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENV 141
K A MW VW +++LQ GMR ++G+G W P+ TF+ I + EN
Sbjct: 594 KKGASLMWRSLVWGKEVLQMGMRWRVGDGTQIRLKVDKWIPQPHTFRVIS--HNAIPENA 653
BLAST of Lcy01g006480 vs. ExPASy TrEMBL
Match:
A0A6P5RF81 (uncharacterized protein LOC110745747 isoform X1 OS=Prunus avium OX=42229 GN=LOC110745747 PE=4 SV=1)
HSP 1 Score: 54.7 bits (130), Expect = 3.8e-04
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 0
Query: 78 VWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTME 137
+W R+LL SG+RK IG+G+ T W P ++F+PI +D + V+DFI P
Sbjct: 33 IWGRELLLSGLRKGIGDGQETLVYGDAWIPSPNSFRPISPQVLD--QETKVSDFIFPVGN 92
Query: 138 WNV 141
WNV
Sbjct: 93 WNV 93
BLAST of Lcy01g006480 vs. NCBI nr
Match:
XP_030483228.1 (uncharacterized protein LOC115699823 [Cannabis sativa])
HSP 1 Score: 61.2 bits (147), Expect = 8.4e-06
Identity = 35/118 (29.66%), Postives = 55/118 (46.61%), Query Frame = 0
Query: 29 WAENSKNGGFSLNSLHAEGKALL----WGLECAREIGIQELQLKSDALRMWGFVWARDLL 88
+ ++ GG + +ALL W ++ +R + + +L G W R+LL
Sbjct: 694 FCKSKMEGGLGFRNFIHFKQALLAKQAWRVDISRNDFLSAATCGASSLTWQGIYWGRELL 753
Query: 89 QSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNVSK 143
+ G+R ++GNG PW P S F P + N VA++ITP EWN+SK
Sbjct: 754 KKGIRMKVGNGLGITCATDPWIPGKSIFTP---MFYTGNPNSAVAEYITPEREWNLSK 808
BLAST of Lcy01g006480 vs. NCBI nr
Match:
XP_030509050.1 (uncharacterized protein LOC115723712 [Cannabis sativa])
HSP 1 Score: 57.8 bits (138), Expect = 9.3e-05
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 0
Query: 78 VWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTME 137
VW ++LL G+R +IG+G + PW P S FKP+ L D +V VADFIT + +
Sbjct: 925 VWGKELLLKGLRWRIGSGADVNCVSQPWIPGPSNFKPLLFLSPD--RDVKVADFITHSRQ 984
Query: 138 WNVSK 143
W+V K
Sbjct: 985 WDVPK 987
BLAST of Lcy01g006480 vs. NCBI nr
Match:
XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])
HSP 1 Score: 56.2 bits (134), Expect = 2.7e-04
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 0
Query: 76 GFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPT 135
GF+W RDLL G+R ++GNG + PW P+ +TFKP+ L + VA FIT
Sbjct: 1003 GFLWGRDLLVKGLRLRVGNGSTIKAFSDPWLPRPTTFKPLRFNNGAL--DTTVASFITAD 1062
Query: 136 MEWNVS 142
W+V+
Sbjct: 1063 GNWDVT 1066
BLAST of Lcy01g006480 vs. NCBI nr
Match:
ONK66393.1 (uncharacterized protein A4U43_C06F7380 [Asparagus officinalis])
HSP 1 Score: 55.1 bits (131), Expect = 6.0e-04
Identity = 40/134 (29.85%), Postives = 58/134 (43.28%), Query Frame = 0
Query: 29 WAE---NSKNGGFSLNSLHAEGKALL----WGLECAREIGIQEL--------------QL 88
WAE N +GG L +ALL W + + ++ L ++
Sbjct: 534 WAELCRNKWDGGLGFRDLELFNQALLAKTYWRIMHSAHSLVRRLLQAKYLPNQEWLEGRV 593
Query: 89 KSDALRMW-GFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENV 141
K A MW VW +++LQ GMR ++G+G W P+ TF+ I + EN
Sbjct: 594 KKGASLMWRSLVWGKEVLQMGMRWRVGDGTQIRLKVDKWIPQPHTFRVIS--HNAIPENA 653
BLAST of Lcy01g006480 vs. NCBI nr
Match:
XP_021801569.1 (uncharacterized protein LOC110745747 isoform X1 [Prunus avium])
HSP 1 Score: 54.7 bits (130), Expect = 7.8e-04
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 0
Query: 78 VWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTME 137
+W R+LL SG+RK IG+G+ T W P ++F+PI +D + V+DFI P
Sbjct: 33 IWGRELLLSGLRKGIGDGQETLVYGDAWIPSPNSFRPISPQVLD--QETKVSDFIFPVGN 92
Query: 138 WNV 141
WNV
Sbjct: 93 WNV 93
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A803Q8J4 | 6.9e-06 | 41.89 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803NM27 | 6.9e-06 | 44.44 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A6J1DX30 | 1.3e-04 | 40.91 | uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A5P1EL44 | 2.9e-04 | 29.85 | Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F7380 PE=4 ... | [more] |
A0A6P5RF81 | 3.8e-04 | 41.27 | uncharacterized protein LOC110745747 isoform X1 OS=Prunus avium OX=42229 GN=LOC1... | [more] |
Match Name | E-value | Identity | Description | |
XP_030483228.1 | 8.4e-06 | 29.66 | uncharacterized protein LOC115699823 [Cannabis sativa] | [more] |
XP_030509050.1 | 9.3e-05 | 43.08 | uncharacterized protein LOC115723712 [Cannabis sativa] | [more] |
XP_022158377.1 | 2.7e-04 | 40.91 | uncharacterized protein LOC111024874 [Momordica charantia] | [more] |
ONK66393.1 | 6.0e-04 | 29.85 | uncharacterized protein A4U43_C06F7380 [Asparagus officinalis] | [more] |
XP_021801569.1 | 7.8e-04 | 41.27 | uncharacterized protein LOC110745747 isoform X1 [Prunus avium] | [more] |
Match Name | E-value | Identity | Description | |