Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCAATCGAATCAAGAGTGACATCAGTCGGAAAATGGCTGCCGGAGGTGGTTTTGGCGCGGCGGCGGCGGCGCTCCCGTCGAAAACGATCGAAGAGCAGAAACTGGAAATCACTAGAGAGATGAGAAGTCATGAGGTCGCCATTGCAGAGCTCAATCATCTTTCCTCTTCCAGAGTAAGCCCTACCGCGCCCTTTCTACAGCTGTTTATTGTTCTTGTTCAAATTTGAACTTGAAGTAGAACGATGTAATAGCATTCTGTTTGAAAAATTGTTCGGACTCTGCCTGTTTTCCTTATTCTGCGGGATATTTTGCTAATCGCTCGCCATGACTAACATTTTGGACGTAGTTTTCGATCGTATCCACTAATATCTAGGGTACAGTGGAATTAAAATATTTGTTACATGTTAATCTAGGGTTTAAATCTTCCAGTAATTGGTGAATTCTTTTTGCTGAACTCGTCTTCTTTTGAACTCGTTTCTTAAACATGCAACGAATTTATGGTTTTTTTATGAATTTGATGATGTAAACTACTTGATTAATTTACTGATTTATTTCTTAGAAGAATGATTGTATTTTGCTTGCTTTATTTTTCTTGAGCTACAATGAAGGATTAAAACGTCTCGATTTTATAGAAATGTCTATGAAAATATGGATGTGAATTAATATTCTTACAAACATCATGAAAATAAAAAGTTGTAATTATCGATTAATTTCTAACATTGATATCAAATTCTTTCATTTCTGAAAAGTGAAAATATTAGGGGAAACATTGATATGTGGATGAACAACACATGACATGAAAAGGATTAAGATGAACTGCCATTGCCTCTCTCTAAGCAACCTTTTACTAAATGTAGATTCCTGATGTTGTTACAAATTGCAGGCTGTCTTTCAGAAAAATGGAAACATATTCTTCCGCACAACTGTTCAGAAGGCAACAACTTCCGAACAGAGTAAGAAAATTGCTTTAGTAAACTTCTACACCCCCAATGTTTTATGCCTTCCCTCTCAACCCCCACCCATGGTTGTAAATTTACTTCCACATTTTAGGTATTTCCATCAATATTTCTATCAGTGAGTGAGTTTTGAATTTTGATATCCATGTGAGGAAGAAAATTTATTTTATGAAATCTAATTGTTAATATTTAAATAAATAAATGATGATTTATAACTTATTGTGAAAATGTTAAGCTTCATCTGTGAGTTCAAATAGTTTTTGAGATCTTAATATGTGCATGATCTTTCTGTTTGACCTTGGCATGGCATCTTCGACATTGATGAAATGTTAAATTACAAATTTGGTCCTTATAGTTTGGAGAAAATTAGAGTTTAGTCTTAATGGTTTTAAATTGAGAATTCTGTATTTTGTTACTATGGTTTGATAAAACCTCATTAAATAGTCTCTATCACATACTC
mRNA sequence
AAGCAATCGAATCAAGAGTGACATCAGTCGGAAAATGGCTGCCGGAGGTGGTTTTGGCGCGGCGGCGGCGGCGCTCCCGTCGAAAACGATCGAAGAGCAGAAACTGGAAATCACTAGAGAGATGAGAAGTCATGAGGTCGCCATTGCAGAGCTCAATCATCTTTCCTCTTCCAGAGCTGTCTTTCAGAAAAATGGAAACATATTCTTCCGCACAACTGTTCAGAAGGCAACAACTTCCGAACAGAGTAAGAAAATTGCTTTAGTAAACTTCTACACCCCCAATGTTTTATGCCTTCCCTCTCAACCCCCACCCATGGTTGTAAATTTACTTCCACATTTTAGGTATTTCCATCAATATTTCTATCAGTGAGTGAGTTTTGAATTTTGATATCCATGTGAGGAAGAAAATTTATTTTATGAAATCTAATTGTTAATATTTAAATAAATAAATGATGATTTATAACTTATTGTGAAAATGTTAAGCTTCATCTGTGAGTTCAAATAGTTTTTGAGATCTTAATATGTGCATGATCTTTCTGTTTGACCTTGGCATGGCATCTTCGACATTGATGAAATGTTAAATTACAAATTTGGTCCTTATAGTTTGGAGAAAATTAGAGTTTAGTCTTAATGGTTTTAAATTGAGAATTCTGTATTTTGTTACTATGGTTTGATAAAACCTCATTAAATAGTCTCTATCACATACTC
Coding sequence (CDS)
ATGGCTGCCGGAGGTGGTTTTGGCGCGGCGGCGGCGGCGCTCCCGTCGAAAACGATCGAAGAGCAGAAACTGGAAATCACTAGAGAGATGAGAAGTCATGAGGTCGCCATTGCAGAGCTCAATCATCTTTCCTCTTCCAGAGCTGTCTTTCAGAAAAATGGAAACATATTCTTCCGCACAACTGTTCAGAAGGCAACAACTTCCGAACAGAGTAAGAAAATTGCTTTAGTAAACTTCTACACCCCCAATGTTTTATGCCTTCCCTCTCAACCCCCACCCATGGTTGTAAATTTACTTCCACATTTTAGGTATTTCCATCAATATTTCTATCAGTGA
Protein sequence
MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRTTVQKATTSEQSKKIALVNFYTPNVLCLPSQPPPMVVNLLPHFRYFHQYFYQ
Homology
BLAST of Lcy01g004860 vs. ExPASy TrEMBL
Match:
A0A6J1HJ49 (uncharacterized protein LOC111464527 OS=Cucurbita moschata OX=3662 GN=LOC111464527 PE=3 SV=1)
HSP 1 Score: 117.1 bits (292), Expect = 4.7e-23
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 0
Query: 1 MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
M GGGFG AAA PS+TIEEQKLEIT+EMRSHEV+IAELNHLSS+RAVFQKNGNIFFRT
Sbjct: 24 MPTGGGFG-TAAAFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRT 83
Query: 61 TVQKATTSEQSK 73
TVQKATTSEQ K
Sbjct: 84 TVQKATTSEQKK 94
BLAST of Lcy01g004860 vs. ExPASy TrEMBL
Match:
A0A6J1KIB7 (uncharacterized protein LOC111494702 OS=Cucurbita maxima OX=3661 GN=LOC111494702 PE=3 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 8.1e-23
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 0
Query: 1 MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
MA GGGFG A+ PS+TIEEQKLEIT+EMRSHEV+IAELNHLSS+RAVFQKNGNIFFRT
Sbjct: 1 MATGGGFG-TASVFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRT 60
Query: 61 TVQKATTSEQSK 73
TVQKATTSEQ K
Sbjct: 61 TVQKATTSEQKK 71
BLAST of Lcy01g004860 vs. ExPASy TrEMBL
Match:
A0A6J1DN63 (uncharacterized protein LOC111022769 OS=Momordica charantia OX=3673 GN=LOC111022769 PE=3 SV=1)
HSP 1 Score: 109.8 bits (273), Expect = 7.6e-21
Identity = 60/73 (82.19%), Postives = 63/73 (86.30%), Query Frame = 0
Query: 1 MAAGGGF-GAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFR 60
MA GGGF AA A PS+TIEEQKLEI + MRSHEVAIAELNHLSS RAVFQKNGN+FFR
Sbjct: 1 MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60
Query: 61 TTVQKATTSEQSK 73
TTVQKATTSEQ K
Sbjct: 61 TTVQKATTSEQKK 73
BLAST of Lcy01g004860 vs. ExPASy TrEMBL
Match:
A0A0A0LK18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G118320 PE=3 SV=1)
HSP 1 Score: 103.2 bits (256), Expect = 7.1e-19
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 0
Query: 1 MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
MAA GG AA+ PS T+EEQKLEIT++MRS EVAIAELNHLSS+RAVFQKNGN+FFRT
Sbjct: 1 MAADGGLSTAAS--PSITMEEQKLEITKQMRSLEVAIAELNHLSSTRAVFQKNGNLFFRT 60
Query: 61 TVQKATTSEQSK 73
TVQKATTSEQ K
Sbjct: 61 TVQKATTSEQKK 70
BLAST of Lcy01g004860 vs. ExPASy TrEMBL
Match:
A0A1S3C672 (uncharacterized protein LOC103496917 OS=Cucumis melo OX=3656 GN=LOC103496917 PE=3 SV=1)
HSP 1 Score: 103.2 bits (256), Expect = 7.1e-19
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 0
Query: 1 MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
MAA GGF + AA PS T EEQKLEIT++MRS EVAIAELNHLSS+RAV+QKNGN+FFRT
Sbjct: 1 MAADGGF--STAAFPSITKEEQKLEITKQMRSLEVAIAELNHLSSTRAVYQKNGNLFFRT 60
Query: 61 TVQKATTSEQSK 73
TVQKATTSEQ K
Sbjct: 61 TVQKATTSEQKK 70
BLAST of Lcy01g004860 vs. NCBI nr
Match:
KAG6593773.1 (hypothetical protein SDJN03_13249, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 119.0 bits (297), Expect = 2.6e-23
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 0
Query: 1 MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
MA GGGFG AAA PS+TIEEQKLEIT+EMRSHEV+IAELNHLSS+RAVFQKNGNIFFRT
Sbjct: 1 MATGGGFG-TAAAFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRT 60
Query: 61 TVQKATTSEQSK 73
TVQKATTSEQ K
Sbjct: 61 TVQKATTSEQKK 71
BLAST of Lcy01g004860 vs. NCBI nr
Match:
KAG7026105.1 (Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 117.9 bits (294), Expect = 5.7e-23
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 0
Query: 1 MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
MA GGGFG AAA PS TIEEQKLEIT+EMRSHEV+IAELNHLSS+RAVFQKNGNIFFRT
Sbjct: 623 MATGGGFG-TAAAFPSTTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRT 682
Query: 61 TVQKATTSEQSK 73
TVQKATTSEQ K
Sbjct: 683 TVQKATTSEQKK 693
BLAST of Lcy01g004860 vs. NCBI nr
Match:
XP_023514719.1 (uncharacterized protein LOC111778937 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 117.1 bits (292), Expect = 9.8e-23
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 0
Query: 1 MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
MA GGGFG AA PS+TIEEQKLEIT+EMRSHEV+IAELNHLSS+RAVFQKNGNIFFRT
Sbjct: 1 MATGGGFG-TAAEFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRT 60
Query: 61 TVQKATTSEQSK 73
TVQKATTSEQ K
Sbjct: 61 TVQKATTSEQKK 71
BLAST of Lcy01g004860 vs. NCBI nr
Match:
XP_022964526.1 (uncharacterized protein LOC111464527 [Cucurbita moschata])
HSP 1 Score: 117.1 bits (292), Expect = 9.8e-23
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 0
Query: 1 MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
M GGGFG AAA PS+TIEEQKLEIT+EMRSHEV+IAELNHLSS+RAVFQKNGNIFFRT
Sbjct: 24 MPTGGGFG-TAAAFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRT 83
Query: 61 TVQKATTSEQSK 73
TVQKATTSEQ K
Sbjct: 84 TVQKATTSEQKK 94
BLAST of Lcy01g004860 vs. NCBI nr
Match:
XP_023000435.1 (uncharacterized protein LOC111494702 [Cucurbita maxima])
HSP 1 Score: 116.3 bits (290), Expect = 1.7e-22
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 0
Query: 1 MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
MA GGGFG A+ PS+TIEEQKLEIT+EMRSHEV+IAELNHLSS+RAVFQKNGNIFFRT
Sbjct: 1 MATGGGFG-TASVFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRT 60
Query: 61 TVQKATTSEQSK 73
TVQKATTSEQ K
Sbjct: 61 TVQKATTSEQKK 71
BLAST of Lcy01g004860 vs. TAIR 10
Match:
AT1G49245.1 (Prefoldin chaperone subunit family protein )
HSP 1 Score: 54.7 bits (130), Expect = 5.6e-08
Identity = 24/59 (40.68%), Postives = 43/59 (72.88%), Query Frame = 0
Query: 14 LPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRTTVQKATTSEQSK 73
+ + T +++ E+ +E++ EV++ EL+ LSSSR+++QKNGN+FF T+ +KA S Q +
Sbjct: 1 MATTTSSDREFELEKEIKRQEVSLDELSSLSSSRSIYQKNGNLFFLTSAEKAKISAQKQ 59
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1HJ49 | 4.7e-23 | 86.11 | uncharacterized protein LOC111464527 OS=Cucurbita moschata OX=3662 GN=LOC1114645... | [more] |
A0A6J1KIB7 | 8.1e-23 | 84.72 | uncharacterized protein LOC111494702 OS=Cucurbita maxima OX=3661 GN=LOC111494702... | [more] |
A0A6J1DN63 | 7.6e-21 | 82.19 | uncharacterized protein LOC111022769 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A0A0LK18 | 7.1e-19 | 79.17 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G118320 PE=3 SV=1 | [more] |
A0A1S3C672 | 7.1e-19 | 79.17 | uncharacterized protein LOC103496917 OS=Cucumis melo OX=3656 GN=LOC103496917 PE=... | [more] |
Match Name | E-value | Identity | Description | |
KAG6593773.1 | 2.6e-23 | 87.50 | hypothetical protein SDJN03_13249, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7026105.1 | 5.7e-23 | 87.50 | Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. ... | [more] |
XP_023514719.1 | 9.8e-23 | 86.11 | uncharacterized protein LOC111778937 [Cucurbita pepo subsp. pepo] | [more] |
XP_022964526.1 | 9.8e-23 | 86.11 | uncharacterized protein LOC111464527 [Cucurbita moschata] | [more] |
XP_023000435.1 | 1.7e-22 | 84.72 | uncharacterized protein LOC111494702 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
AT1G49245.1 | 5.6e-08 | 40.68 | Prefoldin chaperone subunit family protein | [more] |