Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATCGAATTTTGACCAATTTTATTCAGAGCCATGGCCATAGCAATTGGCGAGCTCTTCCTAAACAAGCTGGTGAGTTATTGAGTTTTATTGAGATTTGAATTCAAAAGTTTTGAAATTTACTTTTTTTTTTCTTGATATTCAATAGAATAACAGAAACCCAGAAAAACCCATGTCTTAAATCTACTGATCTCGTCGAATTTTGAAAAAAGTTTGAATCTTTTTAACCCAATCTTCGAGATTTGCCTTAGTTTTTTTTCTGATCTTTTAATTTCTATGTGTAGGGCTTTTGAGATGTGGGAAGAGTTGCAGACTTCGCTGGACAAATTACTTGAGACCTGATATTAAAAGAGGCAACTTTACCAAAGAAGAAGAAGAAGCCATTATCAACCTACATGAATTGCTTGGCAATAGGTAAATTTTCAAAATTTAACCTAAAGTCAAATGCTCGGTCAACCTGAACATAGCTAGTAATCGTTAAAAAAATAAAAATAAAGGCCAAGCACATGCATATGCTTAAACACTTGATATAAATATTTTTTGGAACATTATGATTGAAAGAATAATTATTGTTTTCAAATGAAATGGGGCCTAACTTTTTTTACTTTTCTTTGTTACTATAGATGGTCAGCAATAGCAGCCAAGCTGCCGGGTCGGACAGACAATGAAATCAAGAATGTTTGGCACACCCACTTGAAGAAAAGGCTCGAAAAACACATCAAAACGACAGCTCCCAAATCTGAAAACAGAAGAAAAAAGCAAACAAAACCAAAAAAATCTTCAGATAATTCTTCATCCATTATTGATGTCACAAATCAAACCCATTTGGCCAATTATTCTTCAATGTCCCCTTCTTCACAACAATCTTCAAGCTGTGAGTTCTCTTCATCCTCGCTCACAGATGCTTACATGACTGAAAATGAGTACTACAGCTACCCGGCCGACGACACGGTGGCTCCGCCATTGATCGATGAGAGCTTTTGGTCCGAGGTAGCTGAGAATTCAAATTCAAATTCCAATTCCAATTCCAACTCCAATTCCAACTCGAGTTCCAACTCGAATTATTATAGTGAAGTGAAAATGGAATTTCCAGTCATGTCTGTGGACATGGTGGAATCAAATGAGGATAAGAGTTATGGTCAACGGGTTGTTGATGATGACATGGAATTTTGGTACGATGTTTTTGTCAGAGCTGGAGGAATTTCAGAATTGCCAGAATTTTGAGATCTTTTCAAATCATCAAAGAGGGTTTTGAATTCCCACGTACATGGAAAATTAAGATTATTGTTCCTGATTTTGAAATCCAACCCAATTTCAGAGAATTCACTCGAGGAGGAAGATTTTGGAGATGGG
mRNA sequence
GATCGAATTTTGACCAATTTTATTCAGAGCCATGGCCATAGCAATTGGCGAGCTCTTCCTAAACAAGCTGGGCTTTTGAGATGTGGGAAGAGTTGCAGACTTCGCTGGACAAATTACTTGAGACCTGATATTAAAAGAGGCAACTTTACCAAAGAAGAAGAAGAAGCCATTATCAACCTACATGAATTGCTTGGCAATAGATGGTCAGCAATAGCAGCCAAGCTGCCGGGTCGGACAGACAATGAAATCAAGAATGTTTGGCACACCCACTTGAAGAAAAGGCTCGAAAAACACATCAAAACGACAGCTCCCAAATCTGAAAACAGAAGAAAAAAGCAAACAAAACCAAAAAAATCTTCAGATAATTCTTCATCCATTATTGATGTCACAAATCAAACCCATTTGGCCAATTATTCTTCAATGTCCCCTTCTTCACAACAATCTTCAAGCTGTGAGTTCTCTTCATCCTCGCTCACAGATGCTTACATGACTGAAAATGAGTACTACAGCTACCCGGCCGACGACACGGTGGCTCCGCCATTGATCGATGAGAGCTTTTGGTCCGAGGTAGCTGAGAATTCAAATTCAAATTCCAATTCCAATTCCAACTCCAATTCCAACTCGAGTTCCAACTCGAATTATTATAGTGAAGTGAAAATGGAATTTCCAGTCATGTCTGTGGACATGGTGGAATCAAATGAGGATAAGAGTTATGGTCAACGGGTTGTTGATGATGACATGGAATTTTGGTACGATGTTTTTGTCAGAGCTGGAGGAATTTCAGAATTGCCAGAATTTTGAGATCTTTTCAAATCATCAAAGAGGGTTTTGAATTCCCACGTACATGGAAAATTAAGATTATTGTTCCTGATTTTGAAATCCAACCCAATTTCAGAGAATTCACTCGAGGAGGAAGATTTTGGAGATGGG
Coding sequence (CDS)
ATGTCCCCTTCTTCACAACAATCTTCAAGCTGTGAGTTCTCTTCATCCTCGCTCACAGATGCTTACATGACTGAAAATGAGTACTACAGCTACCCGGCCGACGACACGGTGGCTCCGCCATTGATCGATGAGAGCTTTTGGTCCGAGGTAGCTGAGAATTCAAATTCAAATTCCAATTCCAATTCCAACTCCAATTCCAACTCGAGTTCCAACTCGAATTATTATAGTGAAGTGAAAATGGAATTTCCAGTCATGTCTGTGGACATGGTGGAATCAAATGAGGATAAGAGTTATGGTCAACGGGTTGTTGATGATGACATGGAATTTTGGTACGATGTTTTTGTCAGAGCTGGAGGAATTTCAGAATTGCCAGAATTTTGA
Protein sequence
MSPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTVAPPLIDESFWSEVAENSNSNSNSNSNSNSNSSSNSNYYSEVKMEFPVMSVDMVESNEDKSYGQRVVDDDMEFWYDVFVRAGGISELPEF
Homology
BLAST of Lcy01g003350 vs. ExPASy TrEMBL
Match:
A0A0A0LI77 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G174660 PE=4 SV=1)
HSP 1 Score: 143.7 bits (361), Expect = 5.4e-31
Identity = 88/128 (68.75%), Postives = 102/128 (79.69%), Query Frame = 0
Query: 1 MSPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTVAPPLIDESFWSEVAENSNSNSNS 60
MSPSSQQSSSCE SSS Y+TENEYYSY A+D + P IDESFWSEV + NS +
Sbjct: 1 MSPSSQQSSSCEISSSLTDHTYITENEYYSYTAEDAMPP--IDESFWSEVVD----NSMT 60
Query: 61 NSNSNSNSSSNSNYYSEVKM-EFPVMSVDMVESNEDKS-YGQRVVDDDMEFWYDVFVRAG 120
NSNSNS+SSSNSNY SE KM EFP +S+DM+E++ DK +GQ VVDDDMEFWY+VFV+AG
Sbjct: 61 NSNSNSDSSSNSNYDSEEKMEEFPPVSMDMMETDSDKRLHGQCVVDDDMEFWYNVFVKAG 120
Query: 121 GISELPEF 127
ISELPEF
Sbjct: 121 EISELPEF 122
BLAST of Lcy01g003350 vs. ExPASy TrEMBL
Match:
A0A1S3CCG5 (myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103499420 PE=4 SV=1)
HSP 1 Score: 137.5 bits (345), Expect = 3.8e-29
Identity = 83/127 (65.35%), Postives = 96/127 (75.59%), Query Frame = 0
Query: 1 MSPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTVAPPLIDESFWSEVAENSNSNSNS 60
MSPSSQQSSSCE SSS YMTENEYYSY +D + P IDESFWS+V ENS +NSNS
Sbjct: 165 MSPSSQQSSSCEISSSLTDHTYMTENEYYSYTVEDAMPP--IDESFWSDVVENSMTNSNS 224
Query: 61 NSNSNSNSSSNSNYYSEVKMEFPVMSVDMVESNEDKS-YGQRVVDDDMEFWYDVFVRAGG 120
+S+SNSN S E + EFP +S+DM E+N DK +GQ VVDDDMEFWY+VFV+AG
Sbjct: 225 DSSSNSNYDS-----EEKREEFPPVSMDMTETNSDKRLHGQCVVDDDMEFWYNVFVKAGE 284
Query: 121 ISELPEF 127
ISELPEF
Sbjct: 285 ISELPEF 284
BLAST of Lcy01g003350 vs. ExPASy TrEMBL
Match:
A0A6J1C9P9 (transcription factor MYB13-like OS=Momordica charantia OX=3673 GN=LOC111009610 PE=4 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 6.6e-29
Identity = 81/132 (61.36%), Postives = 97/132 (73.48%), Query Frame = 0
Query: 1 MSPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTV-----APPLIDESFWSEVAENSN 60
MSPSSQQSSSCE SS+TD+Y+TENEYYSY A++ A PLIDESFWSEV
Sbjct: 149 MSPSSQQSSSCEI--SSVTDSYVTENEYYSYEAEEDAVALVEALPLIDESFWSEVV---- 208
Query: 61 SNSNSNSNSNSNSSSNSNYYSEVKMEFPVMSVD-MVESNEDKSYGQRVVDDDMEFWYDVF 120
+ N N N+ + SNSNYY EV+ EFP+MS+D MVE N+D + +DDDMEFWYDVF
Sbjct: 209 IENEINENENNENGSNSNYYGEVQTEFPIMSMDHMVELNDDDKSNGQSLDDDMEFWYDVF 268
Query: 121 VRAGGISELPEF 127
++AGGISELPEF
Sbjct: 269 IKAGGISELPEF 274
BLAST of Lcy01g003350 vs. ExPASy TrEMBL
Match:
A0A6J1KWP0 (transcription factor MYB15-like OS=Cucurbita maxima OX=3661 GN=LOC111498915 PE=4 SV=1)
HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 74/125 (59.20%), Postives = 80/125 (64.00%), Query Frame = 0
Query: 2 SPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTVAPPLIDESFWSEVAENSNSNSNSN 61
SPSSQQSSSCE SSSLTDA M ENEYYSYP + T APP IDESFWSEVAE+S
Sbjct: 165 SPSSQQSSSCEI-SSSLTDASMAENEYYSYPDEGTEAPPPIDESFWSEVAEDS------- 224
Query: 62 SNSNSNSSSNSNYYSEVKMEFPVMSVDMVESNEDKSYGQRVVDDDMEFWYDVFVRAGGIS 121
+NSNS DKS G+ VVDDDMEFWY+VFV+AGGIS
Sbjct: 225 --TNSNSM-------------------------DKSNGESVVDDDMEFWYNVFVQAGGIS 254
Query: 122 ELPEF 127
ELPEF
Sbjct: 285 ELPEF 254
BLAST of Lcy01g003350 vs. ExPASy TrEMBL
Match:
A0A6J1H520 (transcription factor MYB15-like OS=Cucurbita moschata OX=3662 GN=LOC111460214 PE=4 SV=1)
HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 76/129 (58.91%), Postives = 82/129 (63.57%), Query Frame = 0
Query: 2 SPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDT----VAPPLIDESFWSEVAENSNSN 61
SPSSQQSSSCE SSSLTDA M ENEYYSYPA+ T APP IDESFWSEVAE+S
Sbjct: 165 SPSSQQSSSCEI-SSSLTDASMAENEYYSYPAEGTEAMPEAPPPIDESFWSEVAEDS--- 224
Query: 62 SNSNSNSNSNSSSNSNYYSEVKMEFPVMSVDMVESNEDKSYGQRVVDDDMEFWYDVFVRA 121
+NSNS DKSYG+ VVDDDMEFWY+VFV+A
Sbjct: 225 ------TNSNSM-------------------------DKSYGESVVDDDMEFWYNVFVQA 258
Query: 122 GGISELPEF 127
GGISELPEF
Sbjct: 285 GGISELPEF 258
BLAST of Lcy01g003350 vs. NCBI nr
Match:
XP_004147145.1 (transcription factor MYB14 [Cucumis sativus] >KAE8651812.1 hypothetical protein Csa_006634 [Cucumis sativus])
HSP 1 Score: 143.7 bits (361), Expect = 1.1e-30
Identity = 88/128 (68.75%), Postives = 102/128 (79.69%), Query Frame = 0
Query: 1 MSPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTVAPPLIDESFWSEVAENSNSNSNS 60
MSPSSQQSSSCE SSS Y+TENEYYSY A+D + P IDESFWSEV + NS +
Sbjct: 165 MSPSSQQSSSCEISSSLTDHTYITENEYYSYTAEDAMPP--IDESFWSEVVD----NSMT 224
Query: 61 NSNSNSNSSSNSNYYSEVKM-EFPVMSVDMVESNEDKS-YGQRVVDDDMEFWYDVFVRAG 120
NSNSNS+SSSNSNY SE KM EFP +S+DM+E++ DK +GQ VVDDDMEFWY+VFV+AG
Sbjct: 225 NSNSNSDSSSNSNYDSEEKMEEFPPVSMDMMETDSDKRLHGQCVVDDDMEFWYNVFVKAG 284
Query: 121 GISELPEF 127
ISELPEF
Sbjct: 285 EISELPEF 286
BLAST of Lcy01g003350 vs. NCBI nr
Match:
XP_038875538.1 (transcription factor MYB14-like [Benincasa hispida])
HSP 1 Score: 139.4 bits (350), Expect = 2.1e-29
Identity = 89/129 (68.99%), Postives = 99/129 (76.74%), Query Frame = 0
Query: 1 MSPSSQQSSSCEFSSSSLTD-AYMTENEYYSYPADDTVAPPLIDESFWSEVAENSNSNSN 60
MSPSSQQSSSCE SSSSLTD Y+TENEYYSY A++ P IDESFWSEV ENS +NSN
Sbjct: 164 MSPSSQQSSSCEISSSSLTDHTYITENEYYSYTAEE----PPIDESFWSEVVENSMTNSN 223
Query: 61 SNSNSNSNSSSNSNYYSEVKM-EFPVMSVDMVESNEDKSY-GQRVVDDDMEFWYDVFVRA 120
SN SN NY SE KM EFP++S+DMVE+N DK GQ VVDDDMEFWY+VFV+A
Sbjct: 224 SN--------SNLNYDSEEKMEEFPLVSMDMVETNSDKRLNGQCVVDDDMEFWYNVFVKA 280
Query: 121 GGISELPEF 127
ISELPEF
Sbjct: 284 EEISELPEF 280
BLAST of Lcy01g003350 vs. NCBI nr
Match:
XP_008460645.1 (PREDICTED: myb-related protein Myb4-like [Cucumis melo])
HSP 1 Score: 137.5 bits (345), Expect = 7.9e-29
Identity = 83/127 (65.35%), Postives = 96/127 (75.59%), Query Frame = 0
Query: 1 MSPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTVAPPLIDESFWSEVAENSNSNSNS 60
MSPSSQQSSSCE SSS YMTENEYYSY +D + P IDESFWS+V ENS +NSNS
Sbjct: 165 MSPSSQQSSSCEISSSLTDHTYMTENEYYSYTVEDAMPP--IDESFWSDVVENSMTNSNS 224
Query: 61 NSNSNSNSSSNSNYYSEVKMEFPVMSVDMVESNEDKS-YGQRVVDDDMEFWYDVFVRAGG 120
+S+SNSN S E + EFP +S+DM E+N DK +GQ VVDDDMEFWY+VFV+AG
Sbjct: 225 DSSSNSNYDS-----EEKREEFPPVSMDMTETNSDKRLHGQCVVDDDMEFWYNVFVKAGE 284
Query: 121 ISELPEF 127
ISELPEF
Sbjct: 285 ISELPEF 284
BLAST of Lcy01g003350 vs. NCBI nr
Match:
XP_022138436.1 (transcription factor MYB13-like [Momordica charantia])
HSP 1 Score: 136.7 bits (343), Expect = 1.4e-28
Identity = 81/132 (61.36%), Postives = 97/132 (73.48%), Query Frame = 0
Query: 1 MSPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTV-----APPLIDESFWSEVAENSN 60
MSPSSQQSSSCE SS+TD+Y+TENEYYSY A++ A PLIDESFWSEV
Sbjct: 149 MSPSSQQSSSCEI--SSVTDSYVTENEYYSYEAEEDAVALVEALPLIDESFWSEVV---- 208
Query: 61 SNSNSNSNSNSNSSSNSNYYSEVKMEFPVMSVD-MVESNEDKSYGQRVVDDDMEFWYDVF 120
+ N N N+ + SNSNYY EV+ EFP+MS+D MVE N+D + +DDDMEFWYDVF
Sbjct: 209 IENEINENENNENGSNSNYYGEVQTEFPIMSMDHMVELNDDDKSNGQSLDDDMEFWYDVF 268
Query: 121 VRAGGISELPEF 127
++AGGISELPEF
Sbjct: 269 IKAGGISELPEF 274
BLAST of Lcy01g003350 vs. NCBI nr
Match:
XP_022959123.1 (transcription factor MYB15-like [Cucurbita moschata] >KAG7013487.1 Transcription factor MYB15, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 115.5 bits (288), Expect = 3.2e-22
Identity = 76/129 (58.91%), Postives = 82/129 (63.57%), Query Frame = 0
Query: 2 SPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDT----VAPPLIDESFWSEVAENSNSN 61
SPSSQQSSSCE SSSLTDA M ENEYYSYPA+ T APP IDESFWSEVAE+S
Sbjct: 165 SPSSQQSSSCEI-SSSLTDASMAENEYYSYPAEGTEAMPEAPPPIDESFWSEVAEDS--- 224
Query: 62 SNSNSNSNSNSSSNSNYYSEVKMEFPVMSVDMVESNEDKSYGQRVVDDDMEFWYDVFVRA 121
+NSNS DKSYG+ VVDDDMEFWY+VFV+A
Sbjct: 225 ------TNSNSM-------------------------DKSYGESVVDDDMEFWYNVFVQA 258
Query: 122 GGISELPEF 127
GGISELPEF
Sbjct: 285 GGISELPEF 258
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LI77 | 5.4e-31 | 68.75 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G174660 PE=4 SV=1 | [more] |
A0A1S3CCG5 | 3.8e-29 | 65.35 | myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103499420 PE=4 SV=1 | [more] |
A0A6J1C9P9 | 6.6e-29 | 61.36 | transcription factor MYB13-like OS=Momordica charantia OX=3673 GN=LOC111009610 P... | [more] |
A0A6J1KWP0 | 1.6e-22 | 59.20 | transcription factor MYB15-like OS=Cucurbita maxima OX=3661 GN=LOC111498915 PE=4... | [more] |
A0A6J1H520 | 1.6e-22 | 58.91 | transcription factor MYB15-like OS=Cucurbita moschata OX=3662 GN=LOC111460214 PE... | [more] |
Match Name | E-value | Identity | Description | |
XP_004147145.1 | 1.1e-30 | 68.75 | transcription factor MYB14 [Cucumis sativus] >KAE8651812.1 hypothetical protein ... | [more] |
XP_038875538.1 | 2.1e-29 | 68.99 | transcription factor MYB14-like [Benincasa hispida] | [more] |
XP_008460645.1 | 7.9e-29 | 65.35 | PREDICTED: myb-related protein Myb4-like [Cucumis melo] | [more] |
XP_022138436.1 | 1.4e-28 | 61.36 | transcription factor MYB13-like [Momordica charantia] | [more] |
XP_022959123.1 | 3.2e-22 | 58.91 | transcription factor MYB15-like [Cucurbita moschata] >KAG7013487.1 Transcription... | [more] |
Match Name | E-value | Identity | Description | |