Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGGAAATTTTCCAGGTACTACTCTCATTAATTGTTTATCACGTCAGCATCATCTAAATAATAATGTGGACTCCAATAGCATTAAAGAATTACCGGTATAAAGGAAATTTTCCTAGAATAAACGCAAGGAGTAAGTACTTGGAGATCATAAGAAATTTGGAAAAAAAAATATCTTTTTGGTTTCTGAGTTTTAAAGAATATGTGTGATTAGTCCCTGAGTTTTTTAAATGAACATTTTTAGTCTATAAATTTTGAGAAATAGGTTTAAAAGGTGCCTAAATTTTCAAAATGAACCTTTCTAGTCATTGAGTTTTGAGTAATAGGTTAAAAGGTTCGTTCCTCATATTATTTTTTCAACTTTTTAAAATTAATATATTTTTAAATTTTTTTAATTTAAAAAAACCGTGGATATTAAAATATAATAAAATTATTTAATTTTAAAAATTTTGAAAAAAATGATATGAGAAGACCTTCTAAACCTATTTCTCAAAACTCAGGGACCAAGAAGGTCTATTTTGAAAACTTAATTAAGGACCTTTTAAAATGATTTCTCAAAACTTAAGGACTAAAAATGTCTATTTTAAAAACTTAGAGACCAAAGGTACTTATTCCTTCAAACTCGAAGAACTAAAAAGGTATTATTCCATATAAATTTTTTCAAGGTTGCATAACGAGTGAAGGAGATTTGGTGAAAGTTTCCAAGTAGAGCTAGATATATCGTAGCAAAGTTCCAGTTTCTTCTTATATATGCTGCAATTGCCATTGATAAGTTGAACTGCTTGACGAGAATTGGATTCAAAAGAAATAGAAGTAAAACCCAATCGCAACCCCAAGAATATCCTAGCACAAAATCTAATAGTTTAGACCTAGTTTGATAACAAAATTAAGCTTATAAACACTACTTTCACCTTCAAACTTCTTTGTTTTGTTATCTATATTCTTTCCTTGTTTTCAAAAACCAAGTTAAGTTTTAAAAACTAAAAAATTAGGCCCCGTTTGATGATCATTCCATTTTATGTTTTTGGTTTTTGAAAATTAAGCTTATAAACACTCCTTACACCTATACATTTCTTTGGTTTTCTATCTTTCCATGTTTTCAAAAACCAAGTCAAATTTTGAAAAAAAAAAAATTCAAAAACTTGTTTTGTTTTTGAATTTTAGTTAGGAATTCAAATGTGTCCTTAACAAAGATGAAAACCATTATAATGAAATTAGGGGAAAACAAACATAATTTTCAAAAACCGAAAACAAAAAATCAAATAGGGGGCCTAAGTTCTTGTTGGTAACAATTTGGTTTTTTTGTTTTTGGTTTTTAAAAATTATGATTGTTTTTTCATATCTTTATTAAAGAAACATTTGAATCCGTATTCAAATTTCAAAAATAAAAATAAGTTTTCGAAAACTATTTTTTTTAGTTTTCCAAACTTGATTTGGTTTTTGAAACACATGGAAGAAGGTAAATAACAAAACAAAACAAAGAAACTTATAGGCTGGAGTAATGTTTATAAGCTTAATTTTCAAAAATAAAAAACCAACTTAAAACCCCATTTGATGACCATTATTTGGTTTTTGACTTTTTAGTTTTTCAAAATTATGTTTGTTTTTTTCCCAATTTCCTTACAATGATTTCCATCTTCGTTAAGAACCCATTTGAATTCCTAGCCAAATTTCAAGAACAAAAACAAGTTTTTGAAAACTAAATTCCCATTTTATAACCATTTGATTTAGTAAAATTATGTTTGTTTTCTTCCTAATTTTCTTAAAGACACATTTGAATTCTTAGCAAAATTCAAAAACAAAAATAAGTTTGTTTTCAAAACTTGAACTGGTTTTTAATTTGAAAATATGAAAATTAGAAGGTAGGTAAAAAAACAAAGAAACTTATGAATAGAAGTAGTGTTTATAGGCTTAATTTTTAAGAACCAAAAACCAAAAACAAAATGGTTATCAAATATGGCTACTTTTTTTAGTTTTCAAATTTTGATTTTTTAAAACAATGGAAAGAAGATAGATAAAAAAAAAAAAAATAAGCTTATAGGTGTAACTAGTGTTTATAAATTTCAATTTTCAAAAACCAAAGTTAAAAAACAAAATGATTATCAAACGGAAACTCAAACATAAATCAGTAAACAAGACACTATTACATATCTTTATTTTTTAAATTTTAGTTTGATTTGCATCCAACCGTTGTTAAACTCAAGGAAAAAAAATAATAACAATATTTTTATTTGAGAAGCAAACTTTTTCTCACACAAATAACCTTATAGTTAGTAAATTACAAAAATAACCCCAAGTTTTGCTATAAAAGGCCACCTAAGTTTGAACTTCCCAACAGGCAACTCAAACCCAAAAAGCCATAATGTCTCTTAAATACTTTCTTGTGCTTCTTCTCGCAGTGGTGCTTCTTACCACTACTCAAGCTTTGAAACATCCGTCGGACTCCAACCAGGAAGTGATTCCGGTCACTGACCAAAAGCTTCCGACCACCACCGCCACCGACACGGATCCTTTATCGGAGGACGAGGAATCCAAGTACTACAAAAGGAAACCACGCTACAGGAAGTACCCACCCTACAAGAAGCACCCACCATACAAAAAACGTCCCCCATACAAGAAGTATCCACCATCTTCCAACTGA
mRNA sequence
ATGTGTGGAAATTTTCCAGTGGTGCTTCTTACCACTACTCAAGCTTTGAAACATCCGTCGGACTCCAACCAGGAAGTGATTCCGGTCACTGACCAAAAGCTTCCGACCACCACCGCCACCGACACGGATCCTTTATCGGAGGACGAGGAATCCAAGTACTACAAAAGGAAACCACGCTACAGGAAGTACCCACCCTACAAGAAGCACCCACCATACAAAAAACGTCCCCCATACAAGAAGTATCCACCATCTTCCAACTGA
Coding sequence (CDS)
ATGTGTGGAAATTTTCCAGTGGTGCTTCTTACCACTACTCAAGCTTTGAAACATCCGTCGGACTCCAACCAGGAAGTGATTCCGGTCACTGACCAAAAGCTTCCGACCACCACCGCCACCGACACGGATCCTTTATCGGAGGACGAGGAATCCAAGTACTACAAAAGGAAACCACGCTACAGGAAGTACCCACCCTACAAGAAGCACCCACCATACAAAAAACGTCCCCCATACAAGAAGTATCCACCATCTTCCAACTGA
Protein sequence
MCGNFPVVLLTTTQALKHPSDSNQEVIPVTDQKLPTTTATDTDPLSEDEESKYYKRKPRYRKYPPYKKHPPYKKRPPYKKYPPSSN
Homology
BLAST of Lcy01g003250 vs. ExPASy TrEMBL
Match:
A0A6J1EWV3 (uncharacterized protein LOC111436870 OS=Cucurbita moschata OX=3662 GN=LOC111436870 PE=4 SV=1)
HSP 1 Score: 120.9 bits (302), Expect = 2.5e-24
Identity = 65/80 (81.25%), Postives = 73/80 (91.25%), Query Frame = 0
Query: 7 VVLLTTTQALKHPSDSNQEVIPVTDQKLPTTTATDTDPLSEDEESKYYKRKPRYRKYPPY 66
VVLLTTTQALKHPSDS EVIPV++QKLP+TTATDT+P SE EESK+Y RK Y+KYPPY
Sbjct: 13 VVLLTTTQALKHPSDSAHEVIPVSNQKLPSTTATDTEPASEHEESKFY-RKRLYKKYPPY 72
Query: 67 KKHPPYKKRPPYKKYPPSSN 87
K++PPYKKRPPYKKYPPSSN
Sbjct: 73 KRYPPYKKRPPYKKYPPSSN 91
BLAST of Lcy01g003250 vs. ExPASy TrEMBL
Match:
A0A0A0LI79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176190 PE=4 SV=1)
HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 59/86 (68.60%), Postives = 67/86 (77.91%), Query Frame = 0
Query: 7 VVLLTTTQALKHPSDSNQEVIPVTD---QKLPTTTATDTDPLSEDEESKYYKRKPRYR-- 66
VVLLTTTQALKHPS+SNQEVIP TD KLPTT TDP +EESK+Y+R Y+
Sbjct: 27 VVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTTI---TDP---NEESKFYRRPSPYKKP 86
Query: 67 -KYPPYKKHPPYKKRPPYKKYPPSSN 87
K PPYK++PPYKKRPPYKKYPPSS+
Sbjct: 87 YKRPPYKRYPPYKKRPPYKKYPPSSH 106
BLAST of Lcy01g003250 vs. ExPASy TrEMBL
Match:
A0A0A0LNP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176690 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 9.1e-14
Identity = 57/86 (66.28%), Postives = 65/86 (75.58%), Query Frame = 0
Query: 7 VVLLTTTQALKHPSDSNQEVIPVTD---QKLPTTTATDTDPLSEDEESKYYKRKPRYR-- 66
VVLLTTTQALKHP +SNQE IP TD KLPTT TDP +EESK+++R Y+
Sbjct: 27 VVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTI---TDP---NEESKFFRRPSPYKKP 86
Query: 67 -KYPPYKKHPPYKKRPPYKKYPPSSN 87
K PPYKK+PPYKKRPPYKKYPPSS+
Sbjct: 87 YKRPPYKKYPPYKKRPPYKKYPPSSH 106
BLAST of Lcy01g003250 vs. ExPASy TrEMBL
Match:
Q8H0R6 (Proline-rich protein OS=Cucumis sativus OX=3659 GN=prp1 PE=2 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 9.1e-14
Identity = 57/86 (66.28%), Postives = 65/86 (75.58%), Query Frame = 0
Query: 7 VVLLTTTQALKHPSDSNQEVIPVTD---QKLPTTTATDTDPLSEDEESKYYKRKPRYR-- 66
VVLLTTTQALKHP +SNQE IP TD KLPTT TDP +EESK+++R Y+
Sbjct: 13 VVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTI---TDP---NEESKFFRRPSPYKKP 72
Query: 67 -KYPPYKKHPPYKKRPPYKKYPPSSN 87
K PPYKK+PPYKKRPPYKKYPPSS+
Sbjct: 73 YKRPPYKKYPPYKKRPPYKKYPPSSH 92
BLAST of Lcy01g003250 vs. ExPASy TrEMBL
Match:
A0A5A7VEY7 (Repetitive proline-rich cell wall protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00050 PE=4 SV=1)
HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 0
Query: 8 VLLTTTQALKHPSDSNQEVIPVTDQKLPTTTATDTDPLSEDEESKYYKRKPRYR---KYP 67
VLL+TTQALKHPS S+QEVIP TD T T DP +EESK+Y+R Y+ K P
Sbjct: 14 VLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADP---NEESKFYRRPFPYKKPYKRP 73
Query: 68 PYKKHPPYKKRPPYKKYPPSSN 87
PYKK+PPYKKRPPYKKYPPSS+
Sbjct: 74 PYKKYPPYKKRPPYKKYPPSSH 92
BLAST of Lcy01g003250 vs. NCBI nr
Match:
XP_023513909.1 (repetitive proline-rich cell wall protein 3-like [Cucurbita pepo subsp. pepo] >KAG6593838.1 hypothetical protein SDJN03_13314, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026170.1 hypothetical protein SDJN02_12669, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 64/80 (80.00%), Postives = 75/80 (93.75%), Query Frame = 0
Query: 7 VVLLTTTQALKHPSDSNQEVIPVTDQKLPTTTATDTDPLSEDEESKYYKRKPRYRKYPPY 66
VVLLTTTQALKHPSDS EVIPV++QKLP+TTATDT+P SE EESK+Y+++P Y+KYPPY
Sbjct: 13 VVLLTTTQALKHPSDSAHEVIPVSNQKLPSTTATDTEPASEHEESKFYRKRP-YKKYPPY 72
Query: 67 KKHPPYKKRPPYKKYPPSSN 87
K++PPYKKRPPYKKYPPSSN
Sbjct: 73 KRYPPYKKRPPYKKYPPSSN 91
BLAST of Lcy01g003250 vs. NCBI nr
Match:
XP_022930415.1 (uncharacterized protein LOC111436870 [Cucurbita moschata])
HSP 1 Score: 120.9 bits (302), Expect = 5.2e-24
Identity = 65/80 (81.25%), Postives = 73/80 (91.25%), Query Frame = 0
Query: 7 VVLLTTTQALKHPSDSNQEVIPVTDQKLPTTTATDTDPLSEDEESKYYKRKPRYRKYPPY 66
VVLLTTTQALKHPSDS EVIPV++QKLP+TTATDT+P SE EESK+Y RK Y+KYPPY
Sbjct: 13 VVLLTTTQALKHPSDSAHEVIPVSNQKLPSTTATDTEPASEHEESKFY-RKRLYKKYPPY 72
Query: 67 KKHPPYKKRPPYKKYPPSSN 87
K++PPYKKRPPYKKYPPSSN
Sbjct: 73 KRYPPYKKRPPYKKYPPSSN 91
BLAST of Lcy01g003250 vs. NCBI nr
Match:
WP_219729224.1 (hypothetical protein, partial [Pectobacterium odoriferum])
HSP 1 Score: 111.3 bits (277), Expect = 4.2e-21
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 0
Query: 7 VVLLTTTQALKHPSDSNQEVIPVTDQKLPTTTATDTDPLSEDEESKYYKR---KPRYRKY 66
VVLLTTTQALKHPSDSNQEVIP+TD++LPTTT T+TDP DEESK+YK+ K Y K
Sbjct: 19 VVLLTTTQALKHPSDSNQEVIPLTDERLPTTTTTNTDP---DEESKFYKKPYYKRPYYKR 78
Query: 67 PPYKKHPPYKKRPPYKKYPPSSN 87
PPYKK+PPYKK PPYKKYPPSS+
Sbjct: 79 PPYKKYPPYKKHPPYKKYPPSSD 98
BLAST of Lcy01g003250 vs. NCBI nr
Match:
POE15980.1 (hypothetical protein BV923_23575 [Pectobacterium odoriferum])
HSP 1 Score: 111.3 bits (277), Expect = 4.2e-21
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 0
Query: 7 VVLLTTTQALKHPSDSNQEVIPVTDQKLPTTTATDTDPLSEDEESKYYKR---KPRYRKY 66
VVLLTTTQALKHPSDSNQEVIP+TD++LPTTT T+TDP DEESK+YK+ K Y K
Sbjct: 13 VVLLTTTQALKHPSDSNQEVIPLTDERLPTTTTTNTDP---DEESKFYKKPYYKRPYYKR 72
Query: 67 PPYKKHPPYKKRPPYKKYPPSSN 87
PPYKK+PPYKK PPYKKYPPSS+
Sbjct: 73 PPYKKYPPYKKHPPYKKYPPSSD 92
BLAST of Lcy01g003250 vs. NCBI nr
Match:
XP_004147144.2 (repetitive proline-rich cell wall protein 3 [Cucumis sativus])
HSP 1 Score: 92.0 bits (227), Expect = 2.6e-15
Identity = 59/86 (68.60%), Postives = 67/86 (77.91%), Query Frame = 0
Query: 7 VVLLTTTQALKHPSDSNQEVIPVTD---QKLPTTTATDTDPLSEDEESKYYKRKPRYR-- 66
VVLLTTTQALKHPS+SNQEVIP TD KLPTT TDP +EESK+Y+R Y+
Sbjct: 27 VVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTTI---TDP---NEESKFYRRPSPYKKP 86
Query: 67 -KYPPYKKHPPYKKRPPYKKYPPSSN 87
K PPYK++PPYKKRPPYKKYPPSS+
Sbjct: 87 YKRPPYKRYPPYKKRPPYKKYPPSSH 106
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1EWV3 | 2.5e-24 | 81.25 | uncharacterized protein LOC111436870 OS=Cucurbita moschata OX=3662 GN=LOC1114368... | [more] |
A0A0A0LI79 | 1.3e-15 | 68.60 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176190 PE=4 SV=1 | [more] |
A0A0A0LNP2 | 9.1e-14 | 66.28 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176690 PE=4 SV=1 | [more] |
Q8H0R6 | 9.1e-14 | 66.28 | Proline-rich protein OS=Cucumis sativus OX=3659 GN=prp1 PE=2 SV=1 | [more] |
A0A5A7VEY7 | 1.5e-13 | 64.63 | Repetitive proline-rich cell wall protein 3-like OS=Cucumis melo var. makuwa OX=... | [more] |
Match Name | E-value | Identity | Description | |
XP_023513909.1 | 1.1e-24 | 80.00 | repetitive proline-rich cell wall protein 3-like [Cucurbita pepo subsp. pepo] >K... | [more] |
XP_022930415.1 | 5.2e-24 | 81.25 | uncharacterized protein LOC111436870 [Cucurbita moschata] | [more] |
WP_219729224.1 | 4.2e-21 | 75.90 | hypothetical protein, partial [Pectobacterium odoriferum] | [more] |
POE15980.1 | 4.2e-21 | 75.90 | hypothetical protein BV923_23575 [Pectobacterium odoriferum] | [more] |
XP_004147144.2 | 2.6e-15 | 68.60 | repetitive proline-rich cell wall protein 3 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |