Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTCTTGATTTTAGGAATCAAGGTGGTTTCTGCTGAAGGTTTGTCCAACAACAAACTCGACCTCTCCTCAAAGATGAACAATGTTTATGTCATCGTCACACTCAAGGGCGGAGCTTTCAGCGACCAAAAAGCTCAGACAGAAGTCGATACACAAGGTGGCCAAAATCCAAGATGGAACTCTCTAATCAAATTCATGGTTGATCGGAGTTTGTTGACTGAAGCTCTCGACTCTCATCTTACGTTCACTGTCGTGTCCAAAAACCACCTCGGAGACAAAAACATCGGCGAAATCGAAGTGTCGTTTGCAGAGCTTATCCAGTCTGCCGGACAAGGAAGCTCCATGCAAAACGTTTCGTATCCAGTCAAGGAAAGTTCAGGACAGGCCACGAATGGAAAGTTGA
mRNA sequence
ATGGGTTTCTTGATTTTAGGAATCAAGGTGGTTTCTGCTGAAGGTTTGTCCAACAACAAACTCGACCTCTCCTCAAAGATGAACAATGTTTATGTCATCGTCACACTCAAGGGCGGAGCTTTCAGCGACCAAAAAGCTCAGACAGAAGTCGATACACAAGGTGGCCAAAATCCAAGATGGAACTCTCTAATCAAATTCATGAGCTTATCCAGTCTGCCGGACAAGGAAGCTCCATGCAAAACGTTTCGTATCCAGTCAAGGAAAGTTCAGGACAGGCCACGAATGGAAAGTTGA
Coding sequence (CDS)
ATGGGTTTCTTGATTTTAGGAATCAAGGTGGTTTCTGCTGAAGGTTTGTCCAACAACAAACTCGACCTCTCCTCAAAGATGAACAATGTTTATGTCATCGTCACACTCAAGGGCGGAGCTTTCAGCGACCAAAAAGCTCAGACAGAAGTCGATACACAAGGTGGCCAAAATCCAAGATGGAACTCTCTAATCAAATTCATGAGCTTATCCAGTCTGCCGGACAAGGAAGCTCCATGCAAAACGTTTCGTATCCAGTCAAGGAAAGTTCAGGACAGGCCACGAATGGAAAGTTGA
Protein sequence
MGFLILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRWNSLIKFMSLSSLPDKEAPCKTFRIQSRKVQDRPRMES
Homology
BLAST of Lcy01g001280 vs. ExPASy TrEMBL
Match:
A0A0A0KEB7 (C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G194680 PE=4 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 0
Query: 1 MGFLILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRW 60
M + L + V SAE L DLSSKM VYV+V++ G FS+Q+AQT VD +GG+NPRW
Sbjct: 1 MDLMSLEMCVESAEDLKKFDDDLSSKM-KVYVVVSVTSGVFSEQRAQTNVDMEGGENPRW 60
Query: 61 NSLIKFM-SLSSLPDKEAPCKTFRIQSRKVQ 91
N +KF+ L++ TF I+S Q
Sbjct: 61 NFPMKFLIDLNAAKQDLKSLLTFTIKSETPQ 90
BLAST of Lcy01g001280 vs. ExPASy TrEMBL
Match:
A0A1S3C7W3 (uncharacterized protein LOC103497859 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497859 PE=4 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 0
Query: 1 MGFLILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRW 60
M L L I V SAE L DLSSKM VYV+V++ G FS+Q+AQT VD +GG+NPRW
Sbjct: 1 MDLLSLEISVDSAENLKKLD-DLSSKM-KVYVVVSVTSGVFSEQRAQTNVDMEGGENPRW 60
Query: 61 NSLIKFM-SLSSLPDKEAPCKTFRIQSRKVQ 91
N + F+ L++ TF I+S Q
Sbjct: 61 NFPMNFLIDLNAAKQDLNSLLTFTIKSETPQ 89
BLAST of Lcy01g001280 vs. ExPASy TrEMBL
Match:
A0A1S3C803 (protein SRC2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497859 PE=4 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 0
Query: 1 MGFLILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRW 60
M L L I V SAE L DLSSKM VYV+V++ G FS+Q+AQT VD +GG+NPRW
Sbjct: 1 MDLLSLEISVDSAENLKKLD-DLSSKM-KVYVVVSVTSGVFSEQRAQTNVDMEGGENPRW 60
Query: 61 NSLIKFM-SLSSLPDKEAPCKTFRIQSRKVQ 91
N + F+ L++ TF I+S Q
Sbjct: 61 NFPMNFLIDLNAAKQDLNSLLTFTIKSETPQ 89
BLAST of Lcy01g001280 vs. ExPASy TrEMBL
Match:
A0A6J1CAN5 (protein SRC2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009848 PE=4 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 0
Query: 4 LILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRWNSL 63
L L I VVSAEGL++ K S +Y +V++ G A +QK++T VD +GG NP+WN
Sbjct: 8 LTLEINVVSAEGLNDGK---ESPEMKLYAVVSVAGDAEIEQKSETYVDAEGGGNPQWNFP 67
Query: 64 IKFMSLSSLPDK 76
+KF+ S K
Sbjct: 68 MKFIVEKSAAKK 76
BLAST of Lcy01g001280 vs. ExPASy TrEMBL
Match:
A0A6J1CAD4 (protein SRC2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009848 PE=4 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 0
Query: 4 LILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRWNSL 63
L L I VVSAEGL++ K S +Y +V++ G A +QK++T VD +GG NP+WN
Sbjct: 8 LTLEINVVSAEGLNDGK---ESPEMKLYAVVSVAGDAEIEQKSETYVDAEGGGNPQWNFP 67
Query: 64 IKFMSLSSLPDK 76
+KF+ S K
Sbjct: 68 MKFIVEKSAAKK 76
BLAST of Lcy01g001280 vs. NCBI nr
Match:
KGN47184.1 (hypothetical protein Csa_020943 [Cucumis sativus])
HSP 1 Score: 67.4 bits (163), Expect = 7.8e-08
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 0
Query: 1 MGFLILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRW 60
M + L + V SAE L DLSSKM VYV+V++ G FS+Q+AQT VD +GG+NPRW
Sbjct: 1 MDLMSLEMCVESAEDLKKFDDDLSSKM-KVYVVVSVTSGVFSEQRAQTNVDMEGGENPRW 60
Query: 61 NSLIKFM-SLSSLPDKEAPCKTFRIQSRKVQ 91
N +KF+ L++ TF I+S Q
Sbjct: 61 NFPMKFLIDLNAAKQDLKSLLTFTIKSETPQ 90
BLAST of Lcy01g001280 vs. NCBI nr
Match:
XP_008458457.1 (PREDICTED: protein SRC2-like isoform X1 [Cucumis melo])
HSP 1 Score: 65.1 bits (157), Expect = 3.9e-07
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 0
Query: 1 MGFLILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRW 60
M L L I V SAE L DLSSKM VYV+V++ G FS+Q+AQT VD +GG+NPRW
Sbjct: 1 MDLLSLEISVDSAENLKKLD-DLSSKM-KVYVVVSVTSGVFSEQRAQTNVDMEGGENPRW 60
Query: 61 NSLIKFM-SLSSLPDKEAPCKTFRIQSRKVQ 91
N + F+ L++ TF I+S Q
Sbjct: 61 NFPMNFLIDLNAAKQDLNSLLTFTIKSETPQ 89
BLAST of Lcy01g001280 vs. NCBI nr
Match:
XP_008458458.1 (PREDICTED: uncharacterized protein LOC103497859 isoform X2 [Cucumis melo])
HSP 1 Score: 65.1 bits (157), Expect = 3.9e-07
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 0
Query: 1 MGFLILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRW 60
M L L I V SAE L DLSSKM VYV+V++ G FS+Q+AQT VD +GG+NPRW
Sbjct: 1 MDLLSLEISVDSAENLKKLD-DLSSKM-KVYVVVSVTSGVFSEQRAQTNVDMEGGENPRW 60
Query: 61 NSLIKFM-SLSSLPDKEAPCKTFRIQSRKVQ 91
N + F+ L++ TF I+S Q
Sbjct: 61 NFPMNFLIDLNAAKQDLNSLLTFTIKSETPQ 89
BLAST of Lcy01g001280 vs. NCBI nr
Match:
XP_022138766.1 (protein SRC2-like isoform X2 [Momordica charantia])
HSP 1 Score: 55.1 bits (131), Expect = 4.0e-04
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 0
Query: 4 LILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRWNSL 63
L L I VVSAEGL++ K S +Y +V++ G A +QK++T VD +GG NP+WN
Sbjct: 8 LTLEINVVSAEGLNDGK---ESPEMKLYAVVSVAGDAEIEQKSETYVDAEGGGNPQWNFP 67
Query: 64 IKFMSLSSLPDK 76
+KF+ S K
Sbjct: 68 MKFIVEKSAAKK 76
BLAST of Lcy01g001280 vs. NCBI nr
Match:
XP_022138765.1 (protein SRC2-like isoform X1 [Momordica charantia])
HSP 1 Score: 55.1 bits (131), Expect = 4.0e-04
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 0
Query: 4 LILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRWNSL 63
L L I VVSAEGL++ K S +Y +V++ G A +QK++T VD +GG NP+WN
Sbjct: 8 LTLEINVVSAEGLNDGK---ESPEMKLYAVVSVAGDAEIEQKSETYVDAEGGGNPQWNFP 67
Query: 64 IKFMSLSSLPDK 76
+KF+ S K
Sbjct: 68 MKFIVEKSAAKK 76
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KEB7 | 3.8e-08 | 45.05 | C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G194680 PE=4 SV=... | [more] |
A0A1S3C7W3 | 1.9e-07 | 46.15 | uncharacterized protein LOC103497859 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
A0A1S3C803 | 1.9e-07 | 46.15 | protein SRC2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497859 PE=4 SV=1 | [more] |
A0A6J1CAN5 | 1.9e-04 | 43.06 | protein SRC2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009848 PE=4... | [more] |
A0A6J1CAD4 | 1.9e-04 | 43.06 | protein SRC2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009848 PE=4... | [more] |
Match Name | E-value | Identity | Description | |