Lcy01g001280 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g001280
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionC2 domain-containing protein
LocationChr01: 1517054 .. 1517459 (-)
RNA-Seq ExpressionLcy01g001280
SyntenyLcy01g001280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTCTTGATTTTAGGAATCAAGGTGGTTTCTGCTGAAGGTTTGTCCAACAACAAACTCGACCTCTCCTCAAAGATGAACAATGTTTATGTCATCGTCACACTCAAGGGCGGAGCTTTCAGCGACCAAAAAGCTCAGACAGAAGTCGATACACAAGGTGGCCAAAATCCAAGATGGAACTCTCTAATCAAATTCATGGTTGATCGGAGTTTGTTGACTGAAGCTCTCGACTCTCATCTTACGTTCACTGTCGTGTCCAAAAACCACCTCGGAGACAAAAACATCGGCGAAATCGAAGTGTCGTTTGCAGAGCTTATCCAGTCTGCCGGACAAGGAAGCTCCATGCAAAACGTTTCGTATCCAGTCAAGGAAAGTTCAGGACAGGCCACGAATGGAAAGTTGA

mRNA sequence

ATGGGTTTCTTGATTTTAGGAATCAAGGTGGTTTCTGCTGAAGGTTTGTCCAACAACAAACTCGACCTCTCCTCAAAGATGAACAATGTTTATGTCATCGTCACACTCAAGGGCGGAGCTTTCAGCGACCAAAAAGCTCAGACAGAAGTCGATACACAAGGTGGCCAAAATCCAAGATGGAACTCTCTAATCAAATTCATGAGCTTATCCAGTCTGCCGGACAAGGAAGCTCCATGCAAAACGTTTCGTATCCAGTCAAGGAAAGTTCAGGACAGGCCACGAATGGAAAGTTGA

Coding sequence (CDS)

ATGGGTTTCTTGATTTTAGGAATCAAGGTGGTTTCTGCTGAAGGTTTGTCCAACAACAAACTCGACCTCTCCTCAAAGATGAACAATGTTTATGTCATCGTCACACTCAAGGGCGGAGCTTTCAGCGACCAAAAAGCTCAGACAGAAGTCGATACACAAGGTGGCCAAAATCCAAGATGGAACTCTCTAATCAAATTCATGAGCTTATCCAGTCTGCCGGACAAGGAAGCTCCATGCAAAACGTTTCGTATCCAGTCAAGGAAAGTTCAGGACAGGCCACGAATGGAAAGTTGA

Protein sequence

MGFLILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRWNSLIKFMSLSSLPDKEAPCKTFRIQSRKVQDRPRMES
Homology
BLAST of Lcy01g001280 vs. ExPASy TrEMBL
Match: A0A0A0KEB7 (C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G194680 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 0

Query: 1  MGFLILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRW 60
          M  + L + V SAE L     DLSSKM  VYV+V++  G FS+Q+AQT VD +GG+NPRW
Sbjct: 1  MDLMSLEMCVESAEDLKKFDDDLSSKM-KVYVVVSVTSGVFSEQRAQTNVDMEGGENPRW 60

Query: 61 NSLIKFM-SLSSLPDKEAPCKTFRIQSRKVQ 91
          N  +KF+  L++         TF I+S   Q
Sbjct: 61 NFPMKFLIDLNAAKQDLKSLLTFTIKSETPQ 90

BLAST of Lcy01g001280 vs. ExPASy TrEMBL
Match: A0A1S3C7W3 (uncharacterized protein LOC103497859 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497859 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 0

Query: 1  MGFLILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRW 60
          M  L L I V SAE L     DLSSKM  VYV+V++  G FS+Q+AQT VD +GG+NPRW
Sbjct: 1  MDLLSLEISVDSAENLKKLD-DLSSKM-KVYVVVSVTSGVFSEQRAQTNVDMEGGENPRW 60

Query: 61 NSLIKFM-SLSSLPDKEAPCKTFRIQSRKVQ 91
          N  + F+  L++         TF I+S   Q
Sbjct: 61 NFPMNFLIDLNAAKQDLNSLLTFTIKSETPQ 89

BLAST of Lcy01g001280 vs. ExPASy TrEMBL
Match: A0A1S3C803 (protein SRC2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497859 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 0

Query: 1  MGFLILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRW 60
          M  L L I V SAE L     DLSSKM  VYV+V++  G FS+Q+AQT VD +GG+NPRW
Sbjct: 1  MDLLSLEISVDSAENLKKLD-DLSSKM-KVYVVVSVTSGVFSEQRAQTNVDMEGGENPRW 60

Query: 61 NSLIKFM-SLSSLPDKEAPCKTFRIQSRKVQ 91
          N  + F+  L++         TF I+S   Q
Sbjct: 61 NFPMNFLIDLNAAKQDLNSLLTFTIKSETPQ 89

BLAST of Lcy01g001280 vs. ExPASy TrEMBL
Match: A0A6J1CAN5 (protein SRC2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009848 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 4  LILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRWNSL 63
          L L I VVSAEGL++ K    S    +Y +V++ G A  +QK++T VD +GG NP+WN  
Sbjct: 8  LTLEINVVSAEGLNDGK---ESPEMKLYAVVSVAGDAEIEQKSETYVDAEGGGNPQWNFP 67

Query: 64 IKFMSLSSLPDK 76
          +KF+   S   K
Sbjct: 68 MKFIVEKSAAKK 76

BLAST of Lcy01g001280 vs. ExPASy TrEMBL
Match: A0A6J1CAD4 (protein SRC2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009848 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 4  LILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRWNSL 63
          L L I VVSAEGL++ K    S    +Y +V++ G A  +QK++T VD +GG NP+WN  
Sbjct: 8  LTLEINVVSAEGLNDGK---ESPEMKLYAVVSVAGDAEIEQKSETYVDAEGGGNPQWNFP 67

Query: 64 IKFMSLSSLPDK 76
          +KF+   S   K
Sbjct: 68 MKFIVEKSAAKK 76

BLAST of Lcy01g001280 vs. NCBI nr
Match: KGN47184.1 (hypothetical protein Csa_020943 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 7.8e-08
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 0

Query: 1  MGFLILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRW 60
          M  + L + V SAE L     DLSSKM  VYV+V++  G FS+Q+AQT VD +GG+NPRW
Sbjct: 1  MDLMSLEMCVESAEDLKKFDDDLSSKM-KVYVVVSVTSGVFSEQRAQTNVDMEGGENPRW 60

Query: 61 NSLIKFM-SLSSLPDKEAPCKTFRIQSRKVQ 91
          N  +KF+  L++         TF I+S   Q
Sbjct: 61 NFPMKFLIDLNAAKQDLKSLLTFTIKSETPQ 90

BLAST of Lcy01g001280 vs. NCBI nr
Match: XP_008458457.1 (PREDICTED: protein SRC2-like isoform X1 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 3.9e-07
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 0

Query: 1  MGFLILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRW 60
          M  L L I V SAE L     DLSSKM  VYV+V++  G FS+Q+AQT VD +GG+NPRW
Sbjct: 1  MDLLSLEISVDSAENLKKLD-DLSSKM-KVYVVVSVTSGVFSEQRAQTNVDMEGGENPRW 60

Query: 61 NSLIKFM-SLSSLPDKEAPCKTFRIQSRKVQ 91
          N  + F+  L++         TF I+S   Q
Sbjct: 61 NFPMNFLIDLNAAKQDLNSLLTFTIKSETPQ 89

BLAST of Lcy01g001280 vs. NCBI nr
Match: XP_008458458.1 (PREDICTED: uncharacterized protein LOC103497859 isoform X2 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 3.9e-07
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 0

Query: 1  MGFLILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRW 60
          M  L L I V SAE L     DLSSKM  VYV+V++  G FS+Q+AQT VD +GG+NPRW
Sbjct: 1  MDLLSLEISVDSAENLKKLD-DLSSKM-KVYVVVSVTSGVFSEQRAQTNVDMEGGENPRW 60

Query: 61 NSLIKFM-SLSSLPDKEAPCKTFRIQSRKVQ 91
          N  + F+  L++         TF I+S   Q
Sbjct: 61 NFPMNFLIDLNAAKQDLNSLLTFTIKSETPQ 89

BLAST of Lcy01g001280 vs. NCBI nr
Match: XP_022138766.1 (protein SRC2-like isoform X2 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 4.0e-04
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 4  LILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRWNSL 63
          L L I VVSAEGL++ K    S    +Y +V++ G A  +QK++T VD +GG NP+WN  
Sbjct: 8  LTLEINVVSAEGLNDGK---ESPEMKLYAVVSVAGDAEIEQKSETYVDAEGGGNPQWNFP 67

Query: 64 IKFMSLSSLPDK 76
          +KF+   S   K
Sbjct: 68 MKFIVEKSAAKK 76

BLAST of Lcy01g001280 vs. NCBI nr
Match: XP_022138765.1 (protein SRC2-like isoform X1 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 4.0e-04
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 4  LILGIKVVSAEGLSNNKLDLSSKMNNVYVIVTLKGGAFSDQKAQTEVDTQGGQNPRWNSL 63
          L L I VVSAEGL++ K    S    +Y +V++ G A  +QK++T VD +GG NP+WN  
Sbjct: 8  LTLEINVVSAEGLNDGK---ESPEMKLYAVVSVAGDAEIEQKSETYVDAEGGGNPQWNFP 67

Query: 64 IKFMSLSSLPDK 76
          +KF+   S   K
Sbjct: 68 MKFIVEKSAAKK 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KEB73.8e-0845.05C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G194680 PE=4 SV=... [more]
A0A1S3C7W31.9e-0746.15uncharacterized protein LOC103497859 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3C8031.9e-0746.15protein SRC2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497859 PE=4 SV=1[more]
A0A6J1CAN51.9e-0443.06protein SRC2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009848 PE=4... [more]
A0A6J1CAD41.9e-0443.06protein SRC2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009848 PE=4... [more]
Match NameE-valueIdentityDescription
KGN47184.17.8e-0845.05hypothetical protein Csa_020943 [Cucumis sativus][more]
XP_008458457.13.9e-0746.15PREDICTED: protein SRC2-like isoform X1 [Cucumis melo][more]
XP_008458458.13.9e-0746.15PREDICTED: uncharacterized protein LOC103497859 isoform X2 [Cucumis melo][more]
XP_022138766.14.0e-0443.06protein SRC2-like isoform X2 [Momordica charantia][more]
XP_022138765.14.0e-0443.06protein SRC2-like isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainPFAMPF00168C2coord: 6..69
e-value: 3.1E-6
score: 27.4
IPR000008C2 domainPROSITEPS50004C2coord: 1..97
score: 9.413252
IPR035892C2 domain superfamilyGENE3D2.60.40.150C2 domaincoord: 5..93
e-value: 1.0E-6
score: 30.9
IPR035892C2 domain superfamilySUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 4..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g001280.1Lcy01g001280.1mRNA