Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAACAAAAATATATAATTAAATGTGAAGGTCATATGATCTAATAATGTATATATTATCTTAATAGACTATACAAACAGAAACTGCAGTGCACATGTTCTAAGCATAAGTTTTTAGTTCATTAGCCTCTCTATTTATCTGTTCTACTTCCTTGTTGCCTCATACATTATCTCTCTGATCTCTCAGTTTCTCTCTTTCTCAAATGGCTCAAAGCTATGACCAAGAGGAAGGGCAGGGCGCGGCAGGGTTGCGGTGGGCAACACGTCGGGGGATCCAGTTTCGGAGGCGACGAATGCCGGTGGCACGGCTCGGGGGGAAGAGATCGGGGCGGCTCGTGGCGTGGGGGAGAATGGTGAGGAAGATAAGGCTGAGATGGGTGAGATTGAAATGCATTGCCATGGTGAAGAAGATGAAAAAGTGCTACACAAGCTTGATGAAGGATGTAATGGAAGCAGGAGCACATGCTGACTCATATCAACATAGGCTTCTCTTGGAGTCTTCTTTCGCCTTTCCAATTCTGGGCGTCTCTTTCTCTAAACATTCAACTCATCCTACAACTCCATGAATCTCTCTGCATCAAAATTTTCAAATTCATTTAAAGATCACATGTTTGAGAGTTATTTTGGACATGTGTTTCATGGTGATTTTAGTTATTTCAATTACTCCCACACATATCCTTAATCGACGAAGTTCAAATTTCTTTAGTAGTCTAATTAATTAGTTTAATTCTCTCTCATGTCGGATGTGGTGACAGGAAATGTAAAGTTATTT
mRNA sequence
AAAAAAACAAAAATATATAATTAAATGTGAAGGTCATATGATCTAATAATGTATATATTATCTTAATAGACTATACAAACAGAAACTGCAGTGCACATGTTCTAAGCATAAGTTTTTAGTTCATTAGCCTCTCTATTTATCTGTTCTACTTCCTTGTTGCCTCATACATTATCTCTCTGATCTCTCAGTTTCTCTCTTTCTCAAATGGCTCAAAGCTATGACCAAGAGGAAGGGCAGGGCGCGGCAGGGTTGCGGTGGGCAACACGTCGGGGGATCCAGTTTCGGAGGCGACGAATGCCGGTGGCACGGCTCGGGGGGAAGAGATCGGGGCGGCTCGTGGCGTGGGGGAGAATGGTGAGGAAGATAAGGCTGAGATGGGTGAGATTGAAATGCATTGCCATGGTGAAGAAGATGAAAAAGTGCTACACAAGCTTGATGAAGGATGTAATGGAAGCAGGAGCACATGCTGACTCATATCAACATAGGCTTCTCTTGGAGTCTTCTTTCGCCTTTCCAATTCTGGGCGTCTCTTTCTCTAAACATTCAACTCATCCTACAACTCCATGAATCTCTCTGCATCAAAATTTTCAAATTCATTTAAAGATCACATGTTTGAGAGTTATTTTGGACATGTGTTTCATGGTGATTTTAGTTATTTCAATTACTCCCACACATATCCTTAATCGACGAAGTTCAAATTTCTTTAGTAGTCTAATTAATTAGTTTAATTCTCTCTCATGTCGGATGTGGTGACAGGAAATGTAAAGTTATTT
Coding sequence (CDS)
ATGGCTCAAAGCTATGACCAAGAGGAAGGGCAGGGCGCGGCAGGGTTGCGGTGGGCAACACGTCGGGGGATCCAGTTTCGGAGGCGACGAATGCCGGTGGCACGGCTCGGGGGGAAGAGATCGGGGCGGCTCGTGGCGTGGGGGAGAATGGTGAGGAAGATAAGGCTGAGATGGGTGAGATTGAAATGCATTGCCATGGTGAAGAAGATGAAAAAGTGCTACACAAGCTTGATGAAGGATGTAATGGAAGCAGGAGCACATGCTGACTCATATCAACATAGGCTTCTCTTGGAGTCTTCTTTCGCCTTTCCAATTCTGGGCGTCTCTTTCTCTAAACATTCAACTCATCCTACAACTCCATGA
Protein sequence
MAQSYDQEEGQGAAGLRWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRLRWVRLKCIAMVKKMKKCYTSLMKDVMEAGAHADSYQHRLLLESSFAFPILGVSFSKHSTHPTTP
Homology
BLAST of Lcy01g000210 vs. ExPASy TrEMBL
Match:
A0A6J1GAR0 (uncharacterized protein LOC111452314 OS=Cucurbita moschata OX=3662 GN=LOC111452314 PE=4 SV=1)
HSP 1 Score: 184.1 bits (466), Expect = 3.4e-43
Identity = 97/117 (82.91%), Postives = 105/117 (89.74%), Query Frame = 0
Query: 1 MAQSYDQEEGQGA-AGLRWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRLRWV 60
M QS +QEEGQ A AGLRWATR+GIQFRRRRM VARLGGKRSGRLVAWGR +RKIRLRWV
Sbjct: 1 MPQSSEQEEGQQAGAGLRWATRQGIQFRRRRMAVARLGGKRSGRLVAWGRRLRKIRLRWV 60
Query: 61 RLKCIAMVKKMKKCYTSLMKDVMEAGAHADSYQHRLLLESSFAFPILGVSFSKHSTH 117
+LKCIAMVKK+KK SLMKD+MEAGA+ DSYQHRLLLE+SFA PILGVSFS HSTH
Sbjct: 61 KLKCIAMVKKVKKYCASLMKDMMEAGAYGDSYQHRLLLETSFAIPILGVSFSTHSTH 117
BLAST of Lcy01g000210 vs. ExPASy TrEMBL
Match:
A0A6J1GVZ8 (uncharacterized protein LOC111458050 OS=Cucurbita moschata OX=3662 GN=LOC111458050 PE=4 SV=1)
HSP 1 Score: 172.2 bits (435), Expect = 1.3e-39
Identity = 91/119 (76.47%), Postives = 102/119 (85.71%), Query Frame = 0
Query: 1 MAQSYDQEEGQGAAGL----RWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRL 60
M Q Y+ EEGQ AGL R TRRG++FRRRRMPVARLGGKRSGRLVAWGRM+RKIRL
Sbjct: 1 MGQPYEPEEGQPGAGLRRGTRRGTRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRL 60
Query: 61 RWVRLKCIAMVKKMKKCYTSLMKDVMEAGAHADSYQHRLLLESSFAFPILGVSFSKHST 116
RWV+LKCIAMVKKMK+ YT LMKD++EAGA+A SYQHRLLLE+SFA PILGVS S HS+
Sbjct: 61 RWVKLKCIAMVKKMKEYYTRLMKDIIEAGAYARSYQHRLLLETSFAIPILGVSLSTHSS 119
BLAST of Lcy01g000210 vs. ExPASy TrEMBL
Match:
A0A5D3DCV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45855G00010 PE=4 SV=1)
HSP 1 Score: 144.1 bits (362), Expect = 3.9e-31
Identity = 80/118 (67.80%), Postives = 93/118 (78.81%), Query Frame = 0
Query: 1 MAQSYDQEEGQGAAGLRWATRRGIQFRRRR-MPVARLGGKRSGRLVAWGRMVRKIRLRWV 60
MA+SY + + R GIQFRRRR M VARLGGKRSGR++AWGR+VRKIRL+WV
Sbjct: 1 MAESYGDHQEE-------LRRHGIQFRRRRKMAVARLGGKRSGRIMAWGRIVRKIRLKWV 60
Query: 61 RLKCIAMVKKMKKCYTSLMKDVMEAGA--HADSYQHRLLLESSFAFPILGVSFSKHST 116
++KCI MVKKMKK Y LMKD+MEAGA +ADSYQHRLLLE+SFA PILGVS S HS+
Sbjct: 61 KMKCIEMVKKMKKYYKKLMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSS 111
BLAST of Lcy01g000210 vs. ExPASy TrEMBL
Match:
A0A0A0LBW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G644780 PE=4 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 80/118 (67.80%), Postives = 92/118 (77.97%), Query Frame = 0
Query: 1 MAQSYDQEEGQGAAGLRWATRRGIQF-RRRRMPVARLGGKRSGRLVAWGRMVRKIRLRWV 60
MA SY+ + + R GIQF RRRRM VARLGGKRSGR+V WGR+VRKIRL+WV
Sbjct: 1 MAGSYEDHQEE-------LRRCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWV 60
Query: 61 RLKCIAMVKKMKKCYTSLMKDVMEAGA--HADSYQHRLLLESSFAFPILGVSFSKHST 116
++KCI MVKKMKK Y LMKD+MEAGA +ADSYQHRLLLE+SFA PILGVS S HS+
Sbjct: 61 KMKCIEMVKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSS 111
BLAST of Lcy01g000210 vs. ExPASy TrEMBL
Match:
A0A6J1D3L4 (uncharacterized protein LOC111016963 OS=Momordica charantia OX=3673 GN=LOC111016963 PE=4 SV=1)
HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 77/128 (60.16%), Postives = 91/128 (71.09%), Query Frame = 0
Query: 1 MAQSYDQEEGQGAAGLRWATRRGIQF-RRRRMPVARLGGKRS----GRLVAWGRMVRKIR 60
M + Y+ E G GLR A RRGIQF RRRRMPVARLGG S GRL GRMVRKIR
Sbjct: 28 MGEGYETENG---PGLRCAARRGIQFRRRRRMPVARLGGPGSGSGPGRL---GRMVRKIR 87
Query: 61 LRWVRLKCIAMVKKMKKCYTSLMKDVMEAG---AHADSYQHRLLLESSFAFPILGVSFSK 120
+RWV+L+C+AMVKKMKK Y ++KDV+EA A+ +SYQHR+LLE+SFA PIL S
Sbjct: 88 VRWVKLRCLAMVKKMKKWYRKVLKDVIEAQAAVAYPESYQHRVLLETSFAIPILPRSL-- 146
BLAST of Lcy01g000210 vs. NCBI nr
Match:
XP_038891072.1 (uncharacterized protein LOC120080455 [Benincasa hispida])
HSP 1 Score: 185.3 bits (469), Expect = 3.2e-43
Identity = 95/118 (80.51%), Postives = 106/118 (89.83%), Query Frame = 0
Query: 1 MAQSYDQEEGQGAAGLRWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRLRWVR 60
MAQSY+Q EGQ AAGLRW RRGIQFRRRRMPVARLGGKRSGR+VAWGRM+RKIRLRWV+
Sbjct: 1 MAQSYEQGEGQPAAGLRWGMRRGIQFRRRRMPVARLGGKRSGRIVAWGRMLRKIRLRWVK 60
Query: 61 LKCIAMVKKMKKCYTSLMKDVMEAGAH---ADSYQHRLLLESSFAFPILGVSFSKHST 116
+KCIAMVKK+KK YTSLMKD+ME GA+ ADSYQHRLL+E+SFA PILGVS S HS+
Sbjct: 61 VKCIAMVKKIKKYYTSLMKDIMEGGAYGYAADSYQHRLLMETSFAIPILGVSLSTHSS 118
BLAST of Lcy01g000210 vs. NCBI nr
Match:
XP_022948735.1 (uncharacterized protein LOC111452314 [Cucurbita moschata] >XP_023523769.1 uncharacterized protein LOC111787905 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 184.1 bits (466), Expect = 7.0e-43
Identity = 97/117 (82.91%), Postives = 105/117 (89.74%), Query Frame = 0
Query: 1 MAQSYDQEEGQGA-AGLRWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRLRWV 60
M QS +QEEGQ A AGLRWATR+GIQFRRRRM VARLGGKRSGRLVAWGR +RKIRLRWV
Sbjct: 1 MPQSSEQEEGQQAGAGLRWATRQGIQFRRRRMAVARLGGKRSGRLVAWGRRLRKIRLRWV 60
Query: 61 RLKCIAMVKKMKKCYTSLMKDVMEAGAHADSYQHRLLLESSFAFPILGVSFSKHSTH 117
+LKCIAMVKK+KK SLMKD+MEAGA+ DSYQHRLLLE+SFA PILGVSFS HSTH
Sbjct: 61 KLKCIAMVKKVKKYCASLMKDMMEAGAYGDSYQHRLLLETSFAIPILGVSFSTHSTH 117
BLAST of Lcy01g000210 vs. NCBI nr
Match:
KAG6581768.1 (hypothetical protein SDJN03_21770, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 177.2 bits (448), Expect = 8.6e-41
Identity = 90/115 (78.26%), Postives = 102/115 (88.70%), Query Frame = 0
Query: 1 MAQSYDQEEGQGAAGLRWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRLRWVR 60
M Q Y+ EEGQ AGLR TRRG++FRRRRMPVARLGGKRSGRLVAWGRM+RKIRLRWV+
Sbjct: 1 MGQPYEPEEGQPGAGLRRGTRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWVK 60
Query: 61 LKCIAMVKKMKKCYTSLMKDVMEAGAHADSYQHRLLLESSFAFPILGVSFSKHST 116
LKCIAMVKKMK+ YT LMKD++EAGA+A SYQHR+LLE+SFA PILGVS S HS+
Sbjct: 61 LKCIAMVKKMKEYYTRLMKDIIEAGAYAHSYQHRVLLETSFAIPILGVSLSTHSS 115
BLAST of Lcy01g000210 vs. NCBI nr
Match:
XP_022956317.1 (uncharacterized protein LOC111458050 [Cucurbita moschata])
HSP 1 Score: 172.2 bits (435), Expect = 2.8e-39
Identity = 91/119 (76.47%), Postives = 102/119 (85.71%), Query Frame = 0
Query: 1 MAQSYDQEEGQGAAGL----RWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRL 60
M Q Y+ EEGQ AGL R TRRG++FRRRRMPVARLGGKRSGRLVAWGRM+RKIRL
Sbjct: 1 MGQPYEPEEGQPGAGLRRGTRRGTRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRL 60
Query: 61 RWVRLKCIAMVKKMKKCYTSLMKDVMEAGAHADSYQHRLLLESSFAFPILGVSFSKHST 116
RWV+LKCIAMVKKMK+ YT LMKD++EAGA+A SYQHRLLLE+SFA PILGVS S HS+
Sbjct: 61 RWVKLKCIAMVKKMKEYYTRLMKDIIEAGAYARSYQHRLLLETSFAIPILGVSLSTHSS 119
BLAST of Lcy01g000210 vs. NCBI nr
Match:
KAG7018218.1 (hypothetical protein SDJN02_20086, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 169.1 bits (427), Expect = 2.3e-38
Identity = 88/115 (76.52%), Postives = 100/115 (86.96%), Query Frame = 0
Query: 1 MAQSYDQEEGQGAAGLRWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRLRWVR 60
M Q Y+ EEGQ AGL RRG++FRRRRMPVARLGGKRSGRLVAWGRM+RKIRLRWV+
Sbjct: 1 MGQPYEPEEGQPGAGL----RRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWVK 60
Query: 61 LKCIAMVKKMKKCYTSLMKDVMEAGAHADSYQHRLLLESSFAFPILGVSFSKHST 116
LKCIAMVKKMK+ YT LMKD++EAGA+A SYQHR+LLE+SFA PILGVS S HS+
Sbjct: 61 LKCIAMVKKMKEYYTRLMKDIIEAGAYAHSYQHRVLLETSFAIPILGVSLSTHSS 111
BLAST of Lcy01g000210 vs. TAIR 10
Match:
AT1G54120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14060.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 75.9 bits (185), Expect = 2.5e-14
Identity = 47/107 (43.93%), Postives = 72/107 (67.29%), Query Frame = 0
Query: 17 RWA-TRRGIQFRRRRMPVARLGGKRSGRLVAWG-----RMVRKIRLRWVRLKCIAMVKKM 76
RW+ +RR I RRR+ V RLGGK S V+ G +MVR+++LRW++L + +VKK+
Sbjct: 12 RWSRSRRKIHIRRRKSQVVRLGGKNSA--VSRGGFSLKKMVRRMKLRWLKLHYVRVVKKI 71
Query: 77 KKCYTSLMKDVMEAGAHADSYQHRLLLE-SSFAFPILGVSFSKHSTH 117
K Y +L+K+ ++AGA ++ Q R+ +E ++FA P LG+SFS S H
Sbjct: 72 KVFYRNLVKEFVDAGAELEAIQQRMAVEAAAFAVPGLGLSFSSFSVH 116
BLAST of Lcy01g000210 vs. TAIR 10
Match:
AT3G14060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54120.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 60.8 bits (146), Expect = 8.4e-10
Identity = 43/112 (38.39%), Postives = 70/112 (62.50%), Query Frame = 0
Query: 13 AAGLRW-ATRRGIQFRRRRMPVARLGGKRSGRLVAWG--RMVRKIRLRWVRLKCIAMVKK 72
++ RW ++RR I RRR+ V RLGGK S ++ ++V ++RL+W+RL + +VKK
Sbjct: 11 SSAFRWPSSRRKIYLRRRKPQVVRLGGKNSTPRGSFSLKKVVTRMRLKWLRLYYVRLVKK 70
Query: 73 MKKCYTSLMKDVMEAGAHADSYQHRLLLE-SSFAFPILGVSFSKHSTHPTTP 121
+K Y +++K+ EAG A + Q R+ +E ++FA P LG+SF S + P
Sbjct: 71 IKAYYRTIVKEFEEAG--AATIQQRMTVETAAFAAPGLGLSFCPMSGYVDQP 120
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1GAR0 | 3.4e-43 | 82.91 | uncharacterized protein LOC111452314 OS=Cucurbita moschata OX=3662 GN=LOC1114523... | [more] |
A0A6J1GVZ8 | 1.3e-39 | 76.47 | uncharacterized protein LOC111458050 OS=Cucurbita moschata OX=3662 GN=LOC1114580... | [more] |
A0A5D3DCV1 | 3.9e-31 | 67.80 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0LBW7 | 1.5e-30 | 67.80 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G644780 PE=4 SV=1 | [more] |
A0A6J1D3L4 | 1.3e-23 | 60.16 | uncharacterized protein LOC111016963 OS=Momordica charantia OX=3673 GN=LOC111016... | [more] |
Match Name | E-value | Identity | Description | |
XP_038891072.1 | 3.2e-43 | 80.51 | uncharacterized protein LOC120080455 [Benincasa hispida] | [more] |
XP_022948735.1 | 7.0e-43 | 82.91 | uncharacterized protein LOC111452314 [Cucurbita moschata] >XP_023523769.1 unchar... | [more] |
KAG6581768.1 | 8.6e-41 | 78.26 | hypothetical protein SDJN03_21770, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022956317.1 | 2.8e-39 | 76.47 | uncharacterized protein LOC111458050 [Cucurbita moschata] | [more] |
KAG7018218.1 | 2.3e-38 | 76.52 | hypothetical protein SDJN02_20086, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
AT1G54120.1 | 2.5e-14 | 43.93 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
AT3G14060.1 | 8.4e-10 | 38.39 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |