Lag0042153 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0042153
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr13: 37523695 .. 37524111 (+)
RNA-Seq ExpressionLag0042153
SyntenyLag0042153
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAATACCTTAATCTCTTCAAGGATCATCTGCAGCCTCTTTTGGTGGAATCCGACTCTCTCTCGCTGGTGAAGTTACTCAATGATCACCCTCATTCCCCAGATCTTTCAGAAGCCAAGCTGTTGGTGGACGATATTGTCGATATTACGAGGAAGACGGGGGAGGTGACGTTCGCTTGGTGCCCAAGATCGTGCAATAGGGCAGCGCATTCTCTGGCGTCTAACACCGCAAAATCCAGGTCGACTCCATCTCTTTCGATCGGATTTCAGTCCAGGCCTGTGTGCCATTCTTTTTGTGTACAGAACCTTTGTTCCTCCATGGAAGATGAGTTAATTTTTTGTGGGTGTTCCTGTACCCCTCCTTGGCTGGCCTCTGTTATAAATGAGGAAGCTGTTGTTTGGTGTGGTAGTTAA

mRNA sequence

ATGATCAAATACCTTAATCTCTTCAAGGATCATCTGCAGCCTCTTTTGGTGGAATCCGACTCTCTCTCGCTGGTGAAGTTACTCAATGATCACCCTCATTCCCCAGATCTTTCAGAAGCCAAGCTGTTGGTGGACGATATTGTCGATATTACGAGGAAGACGGGGGAGGTGACGTTCGCTTGGTGCCCAAGATCGTGCAATAGGGCAGCGCATTCTCTGGCGTCTAACACCGCAAAATCCAGGTCGACTCCATCTCTTTCGATCGGATTTCAGTCCAGGCCTGTGTGCCATTCTTTTTGTGTACAGAACCTTTGTTCCTCCATGGAAGATGAGTTAATTTTTTGTGGGTGTTCCTGTACCCCTCCTTGGCTGGCCTCTGTTATAAATGAGGAAGCTGTTGTTTGGTGTGGTAGTTAA

Coding sequence (CDS)

ATGATCAAATACCTTAATCTCTTCAAGGATCATCTGCAGCCTCTTTTGGTGGAATCCGACTCTCTCTCGCTGGTGAAGTTACTCAATGATCACCCTCATTCCCCAGATCTTTCAGAAGCCAAGCTGTTGGTGGACGATATTGTCGATATTACGAGGAAGACGGGGGAGGTGACGTTCGCTTGGTGCCCAAGATCGTGCAATAGGGCAGCGCATTCTCTGGCGTCTAACACCGCAAAATCCAGGTCGACTCCATCTCTTTCGATCGGATTTCAGTCCAGGCCTGTGTGCCATTCTTTTTGTGTACAGAACCTTTGTTCCTCCATGGAAGATGAGTTAATTTTTTGTGGGTGTTCCTGTACCCCTCCTTGGCTGGCCTCTGTTATAAATGAGGAAGCTGTTGTTTGGTGTGGTAGTTAA

Protein sequence

MIKYLNLFKDHLQPLLVESDSLSLVKLLNDHPHSPDLSEAKLLVDDIVDITRKTGEVTFAWCPRSCNRAAHSLASNTAKSRSTPSLSIGFQSRPVCHSFCVQNLCSSMEDELIFCGCSCTPPWLASVINEEAVVWCGS
Homology
The following BLAST results are available for this feature:
BLAST of Lag0042153 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0042153 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..84
e-value: 3.5E-7
score: 32.2
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 12..75
e-value: 3.2E-11
score: 43.1
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 11..74
e-value: 5.93656E-12
score: 56.5536

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0042153.1Lag0042153.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity