Lag0041218 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041218
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein of unknown function, DUF538
Location	chr13: 13892324 .. 13892851 (+)
RNA-Seq Expression	Lag0041218
Synteny	Lag0041218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTGATCACAGAAGAGGTGAAAGCCAAAGCCGACGAGGTCTACTATGGCGACAAGATCTCACAAGAGAAAACCAGGCTTCTACTCAAAGAAGTGGGACTTCCCAATGGGCTTTTGCCATTGAAGGACATAATAGAATGTGGCTATGTCAAGGACACTGGCTTCGTTTGGATGAAGCAAAAGAAGCCCATAACCCACAAGTTCCACAAAGTTGGCAAGCAAGTCACCTACGCCAAAGAGGTCACCGCCATTGTCGAGAAGAATAGGGTCAAGAATTTGACGGGTGTTAAGGCCAAGGAGGTCTTGGTTTGGCTCACTTTGTCCGACATCTATGTCGACGACCCCCCGACCGGGAACATTACGTTCCAGATCCCGGCCGGGCTCTCTAGGTCTTATCCGGTCGACGCGTTCGAGATCCAGGAAGAGGCAACGGTGACCGAGAAGAAGGAGGAGGAAGTGAAGGAGAAGGAGGTGAGGGAGGTGAGTAATGGAGGGAGTGTGGTTGTGAATGTGAAGGAGGTTTGA

mRNA sequence

ATGTCTGTGATCACAGAAGAGGTGAAAGCCAAAGCCGACGAGGTCTACTATGGCGACAAGATCTCACAAGAGAAAACCAGGCTTCTACTCAAAGAAGTGGGACTTCCCAATGGGCTTTTGCCATTGAAGGACATAATAGAATGTGGCTATGTCAAGGACACTGGCTTCGTTTGGATGAAGCAAAAGAAGCCCATAACCCACAAGTTCCACAAAGTTGGCAAGCAAGTCACCTACGCCAAAGAGGTCACCGCCATTGTCGAGAAGAATAGGGTCAAGAATTTGACGGGTGTTAAGGCCAAGGAGGTCTTGGTTTGGCTCACTTTGTCCGACATCTATGTCGACGACCCCCCGACCGGGAACATTACGTTCCAGATCCCGGCCGGGCTCTCTAGGTCTTATCCGGTCGACGCGTTCGAGATCCAGGAAGAGGCAACGGTGACCGAGAAGAAGGAGGAGGAAGTGAAGGAGAAGGAGGTGAGGGAGGTGAGTAATGGAGGGAGTGTGGTTGTGAATGTGAAGGAGGTTTGA

Coding sequence (CDS)

ATGTCTGTGATCACAGAAGAGGTGAAAGCCAAAGCCGACGAGGTCTACTATGGCGACAAGATCTCACAAGAGAAAACCAGGCTTCTACTCAAAGAAGTGGGACTTCCCAATGGGCTTTTGCCATTGAAGGACATAATAGAATGTGGCTATGTCAAGGACACTGGCTTCGTTTGGATGAAGCAAAAGAAGCCCATAACCCACAAGTTCCACAAAGTTGGCAAGCAAGTCACCTACGCCAAAGAGGTCACCGCCATTGTCGAGAAGAATAGGGTCAAGAATTTGACGGGTGTTAAGGCCAAGGAGGTCTTGGTTTGGCTCACTTTGTCCGACATCTATGTCGACGACCCCCCGACCGGGAACATTACGTTCCAGATCCCGGCCGGGCTCTCTAGGTCTTATCCGGTCGACGCGTTCGAGATCCAGGAAGAGGCAACGGTGACCGAGAAGAAGGAGGAGGAAGTGAAGGAGAAGGAGGTGAGGGAGGTGAGTAATGGAGGGAGTGTGGTTGTGAATGTGAAGGAGGTTTGA

Protein sequence

MSVITEEVKAKADEVYYGDKISQEKTRLLLKEVGLPNGLLPLKDIIECGYVKDTGFVWMKQKKPITHKFHKVGKQVTYAKEVTAIVEKNRVKNLTGVKAKEVLVWLTLSDIYVDDPPTGNITFQIPAGLSRSYPVDAFEIQEEATVTEKKEEEVKEKEVREVSNGGSVVVNVKEV

Homology

[Close]

BLAST of Lag0041218 vs. NCBI nr
Match: KAG6600829.1 (hypothetical protein SDJN03_06062, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300.8 bits (769), Expect = 7.5e-78
Identity = 154/177 (87.01%), Postives = 167/177 (94.35%), Query Frame = 0


Query: 1   MSVITEEVKAKADEVYYGDKISQEKTRLLLKEVGLPNGLLPLKDIIECGYVKDTGFVWMK 60
           MS+ITEEVK KADEVYYGDKISQEKTRLLLKEVGLPNGLLPLKDIIECGYVK++GFVWMK
Sbjct: 1   MSLITEEVKGKADEVYYGDKISQEKTRLLLKEVGLPNGLLPLKDIIECGYVKESGFVWMK 60

Query: 61  QKKPITHKFHKVGKQVTYAKEVTAIVEKNRVKNLTGVKAKEVLVWLTLSDIYVDDPPTGN 120
           QKK ITHKFHK+GKQVTYAKEVTA VEKNRVKNLTGVKAKEVL+WLTLS+IYVDDPPTGN
Sbjct: 61  QKKAITHKFHKIGKQVTYAKEVTANVEKNRVKNLTGVKAKEVLIWLTLSEIYVDDPPTGN 120

Query: 121 ITFQIPAGLSRSYPVDAFEIQEEATVTEKKEEEVKEKE--VREVSNGGSVVVNVKEV 176
           ITFQIPAGLSR+YPVDAFEI+EEA    KK+++VKE+E   +EVSNGGSVVVNVKEV
Sbjct: 121 ITFQIPAGLSRAYPVDAFEIEEEAGTETKKKKDVKEEEEVKKEVSNGGSVVVNVKEV 177

[Close]

BLAST of Lag0041218 vs. NCBI nr
Match: XP_004142271.1 (uncharacterized protein LOC101204611 [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 1.7e-77
Identity = 155/181 (85.64%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1   MSVITEEVKAKADEVYYGDKISQEKTRLLLKEVGLPNGLLPLKDIIECGYVKDTGFVWMK 60
           MS+ITEE+KAKADEVYYGDKISQEKTRLLLKEVGLPNGLLPLKD+IECGYVK+TGFVWMK
Sbjct: 1   MSLITEELKAKADEVYYGDKISQEKTRLLLKEVGLPNGLLPLKDVIECGYVKETGFVWMK 60

Query: 61  QKKPITHKFHKVGKQVTYAKEVTAIVEKNRVKNLTGVKAKEVLVWLTLSDIYVDDPPTGN 120
           QKK ITHKF+K+GKQV+YAKEVTA VEKN+VKNLTGVKAKEVL+WLTLS+IYVDDPPTGN
Sbjct: 61  QKKAITHKFNKIGKQVSYAKEVTANVEKNKVKNLTGVKAKEVLIWLTLSEIYVDDPPTGN 120

Query: 121 ITFQIPAGLSRSYPVDAFEIQEE--ATVTEKK----EEEVKEKEVREVSNGGSVVVNVKE 176
           ITF+IP GLSR+YPV+AFE++EE  AT TEKK    EE VKEKEVREVSNGGSVVVNVKE
Sbjct: 121 ITFKIPTGLSRAYPVNAFEVEEEETATATEKKEVKEEEGVKEKEVREVSNGGSVVVNVKE 180

[Close]

BLAST of Lag0041218 vs. NCBI nr
Match: XP_022942634.1 (uncharacterized protein LOC111447611 [Cucurbita moschata])

HSP 1 Score: 299.7 bits (766), Expect = 1.7e-77
Identity = 154/180 (85.56%), Postives = 167/180 (92.78%), Query Frame = 0


Query: 1   MSVITEEVKAKADEVYYGDKISQEKTRLLLKEVGLPNGLLPLKDIIECGYVKDTGFVWMK 60
           MS+ITEEVK KADEVYYGDKISQEKTRLLLKEVGLPNGLLPLKDIIECGYVK++GFVWMK
Sbjct: 1   MSLITEEVKGKADEVYYGDKISQEKTRLLLKEVGLPNGLLPLKDIIECGYVKESGFVWMK 60

Query: 61  QKKPITHKFHKVGKQVTYAKEVTAIVEKNRVKNLTGVKAKEVLVWLTLSDIYVDDPPTGN 120
           QKK ITHKFHK+GKQVTYAKEVTA VEKNRVKNLTGVKAKEVL+WLTLS+IYVDDPPTGN
Sbjct: 61  QKKAITHKFHKIGKQVTYAKEVTANVEKNRVKNLTGVKAKEVLIWLTLSEIYVDDPPTGN 120

Query: 121 ITFQIPAGLSRSYPVDAFEIQEEATVTEKKEEEVKEKE-----VREVSNGGSVVVNVKEV 176
           ITFQIPAGLSR+YPVDAFEI+EEA    KK+++VKE+E      +EVSNGGSVVVNVKEV
Sbjct: 121 ITFQIPAGLSRAYPVDAFEIEEEAGTETKKKKDVKEEEEVKEVKKEVSNGGSVVVNVKEV 180

[Close]

BLAST of Lag0041218 vs. NCBI nr
Match: XP_023550449.1 (uncharacterized protein LOC111808593 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299.3 bits (765), Expect = 2.2e-77
Identity = 156/179 (87.15%), Postives = 168/179 (93.85%), Query Frame = 0


Query: 1   MSVITEEVKAKADEVYYGDKISQEKTRLLLKEVGLPNGLLPLKDIIECGYVKDTGFVWMK 60
           MSVITEEVK KADEVYYGDK+SQEKTRLLLKEVGLPNGLLPLKDIIECGYVK++GFVWMK
Sbjct: 1   MSVITEEVKGKADEVYYGDKVSQEKTRLLLKEVGLPNGLLPLKDIIECGYVKESGFVWMK 60

Query: 61  QKKPITHKFHKVGKQVTYAKEVTAIVEKNRVKNLTGVKAKEVLVWLTLSDIYVDDPPTGN 120
           QKK ITHKFHK+GKQVTYAKEVTA VEKNRVKNLTGVKAKEVL+WLTLS+IYVDDPPTGN
Sbjct: 61  QKKAITHKFHKIGKQVTYAKEVTANVEKNRVKNLTGVKAKEVLIWLTLSEIYVDDPPTGN 120

Query: 121 ITFQIPAGLSRSYPVDAFEIQEEA-TVTEK---KEEEVKEKEVREVSNGGSVVVNVKEV 176
           ITFQIPAGLSR+YPVDAFEI+EEA T T+K   KEEE +E+  +EVSNGGSVVVNVKEV
Sbjct: 121 ITFQIPAGLSRAYPVDAFEIEEEAGTETKKKDVKEEEEEEEVKKEVSNGGSVVVNVKEV 179

[Close]

BLAST of Lag0041218 vs. NCBI nr
Match: XP_022993606.1 (uncharacterized protein LOC111489547 [Cucurbita maxima])

HSP 1 Score: 298.9 bits (764), Expect = 2.9e-77
Identity = 154/179 (86.03%), Postives = 170/179 (94.97%), Query Frame = 0


Query: 1   MSVITEEVKAKADEVYYGDKISQEKTRLLLKEVGLPNGLLPLKDIIECGYVKDTGFVWMK 60
           MS+ITEEVKAKADEVYYGDK+SQEKTRLLLKEVGLPNGLLPLKDIIECGYVK++GFVWMK
Sbjct: 1   MSLITEEVKAKADEVYYGDKVSQEKTRLLLKEVGLPNGLLPLKDIIECGYVKESGFVWMK 60

Query: 61  QKKPITHKFHKVGKQVTYAKEVTAIVEKNRVKNLTGVKAKEVLVWLTLSDIYVDDPPTGN 120
           QKK ITHKFHK+GKQVTYAKEVTA VEKNRVKNLTGVKAKEVL+WLTLS+IYVDDPPTGN
Sbjct: 61  QKKAITHKFHKIGKQVTYAKEVTANVEKNRVKNLTGVKAKEVLIWLTLSEIYVDDPPTGN 120

Query: 121 ITFQIPAGLSRSYPVDAFEIQEEATVTEKKEEEVKEKEV----REVSNGGSVVVNVKEV 176
           ITFQIPAGLSR+YPVDAFEI+EEA  TE K+++VKE++V    +EVSNGG+VVVNVKEV
Sbjct: 121 ITFQIPAGLSRAYPVDAFEIEEEAG-TETKKKDVKEEDVKEVKKEVSNGGNVVVNVKEV 178

The following BLAST results are available for this feature:

BLAST of Lag0041218 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600829.1	7.5e-78	87.01	hypothetical protein SDJN03_06062, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004142271.1	1.7e-77	85.64	uncharacterized protein LOC101204611 [Cucumis sativus]	[more]
XP_022942634.1	1.7e-77	85.56	uncharacterized protein LOC111447611 [Cucurbita moschata]	[more]
XP_023550449.1	2.2e-77	87.15	uncharacterized protein LOC111808593 [Cucurbita pepo subsp. pepo]	[more]
XP_022993606.1	2.9e-77	86.03	uncharacterized protein LOC111489547 [Cucurbita maxima]	[more]

BLAST of Lag0041218 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007493	Protein of unknown function DUF538	PFAM	PF04398	DUF538	coord: 29..139 e-value: 5.8E-32 score: 110.5
IPR007493	Protein of unknown function DUF538	PANTHER	PTHR31676	T31J12.3 PROTEIN-RELATED	coord: 2..164
IPR036758	At5g01610-like superfamily	GENE3D	2.30.240.10		coord: 6..150 e-value: 1.6E-36 score: 127.1
IPR036758	At5g01610-like superfamily	SUPERFAMILY	141562	At5g01610-like	coord: 13..143
None	No IPR available	PANTHER	PTHR31676:SF153	SUBFAMILY NOT NAMED	coord: 2..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041218.1	Lag0041218.1	mRNA