Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCCAATAAAGCTCTGCCTATTCCTCGTCCTGATCGTCGTCGCCACTGCCCCTCGCTCCTCCGCCATCAAGGACCGGTTCCGTGCCTATGGCAACCCCGAATTCGCCTACTTCGGTGTAAATATCGTACCGGCATCGTTGGACAAAGACAGTGGCCGACTGCTTTTCCAATACGGATATAAATACAAGTACCCACCCAGCAAGTACATTAGCTACGAAGCGCTTAAGGCGAACAATATTCCTTGTGGCAAACGTGGAGCCTCTTACTATCATTGCGTCAAGCGAATAAAGGCCAACCCCTATACTCGTGGTTGCAGCTTCAGGACTGGCTGCGCTCGCTACACTGATTAA
mRNA sequence
ATGGGCCCAATAAAGCTCTGCCTATTCCTCGTCCTGATCGTCGTCGCCACTGCCCCTCGCTCCTCCGCCATCAAGGACCGGTTCCGTGCCTATGGCAACCCCGAATTCGCCTACTTCGGTGTAAATATCGTACCGGCATCGTTGGACAAAGACAGTGGCCGACTGCTTTTCCAATACGGATATAAATACAAGTACCCACCCAGCAAGTACATTAGCTACGAAGCGCTTAAGGCGAACAATATTCCTTGTGGCAAACGTGGAGCCTCTTACTATCATTGCGTCAAGCGAATAAAGGCCAACCCCTATACTCGTGGTTGCAGCTTCAGGACTGGCTGCGCTCGCTACACTGATTAA
Coding sequence (CDS)
ATGGGCCCAATAAAGCTCTGCCTATTCCTCGTCCTGATCGTCGTCGCCACTGCCCCTCGCTCCTCCGCCATCAAGGACCGGTTCCGTGCCTATGGCAACCCCGAATTCGCCTACTTCGGTGTAAATATCGTACCGGCATCGTTGGACAAAGACAGTGGCCGACTGCTTTTCCAATACGGATATAAATACAAGTACCCACCCAGCAAGTACATTAGCTACGAAGCGCTTAAGGCGAACAATATTCCTTGTGGCAAACGTGGAGCCTCTTACTATCATTGCGTCAAGCGAATAAAGGCCAACCCCTATACTCGTGGTTGCAGCTTCAGGACTGGCTGCGCTCGCTACACTGATTAA
Protein sequence
MGPIKLCLFLVLIVVATAPRSSAIKDRFRAYGNPEFAYFGVNIVPASLDKDSGRLLFQYGYKYKYPPSKYISYEALKANNIPCGKRGASYYHCVKRIKANPYTRGCSFRTGCARYTD
Homology
BLAST of Lag0041084 vs. NCBI nr
Match:
XP_038876152.1 (uncharacterized protein LOC120068449 [Benincasa hispida])
HSP 1 Score: 140.6 bits (353), Expect = 8.7e-30
Identity = 67/117 (57.26%), Postives = 86/117 (73.50%), Query Frame = 0
Query: 1 MGPIKLCLFLVLIVVATAPRSSAIKDRFRAYGNPEFAYFGVNIVPASLDKDSGRLLFQYG 60
MG +KLCLFL L+V A +P S A D AYG PE+A++G + P + +D+ RLLFQYG
Sbjct: 1 MGTMKLCLFL-LLVAAVSPLSFAYSDWTHAYGAPEYAFWG-SSTPTATIEDNRRLLFQYG 60
Query: 61 YKYKYPPSKYISYEALKANNIPCGKRGASYYHCVKRIKANPYTRGCSFRTGCARYTD 118
+ YKYP ++Y+SYEAL+ NN+PCG RG SYY C + KANPY RGC+ TGCAR+TD
Sbjct: 61 FAYKYPRNRYLSYEALRKNNVPCGHRGRSYYDCNQHQKANPYRRGCTAITGCARFTD 115
BLAST of Lag0041084 vs. NCBI nr
Match:
XP_016902249.1 (PREDICTED: protein RALF-like 4 [Cucumis melo] >KAA0033467.1 protein RALF-like 4 [Cucumis melo var. makuwa])
HSP 1 Score: 132.9 bits (333), Expect = 1.8e-27
Identity = 67/117 (57.26%), Postives = 85/117 (72.65%), Query Frame = 0
Query: 4 IKLCLFLVLIVVA-TAPRSSAIKDRFRAYGNPEFAYFGVNIVPASLD--KDSGRLLFQYG 63
+KLCL L+L+V A A A+ D RA+GNPE+A++G N PA+++ DS RLLFQYG
Sbjct: 1 MKLCLCLLLLVAAFAATLPVALCDWTRAFGNPEYAFWG-NSAPATINDVDDSRRLLFQYG 60
Query: 64 YKYKYPPSKYISYEALKANNIPCGKRGASYYHCVKRIKANPYTRGCSFRTGCARYTD 118
+ YKYP +KY+ Y+AL+ NN PC +RG SYY C KR KANPY RGC TGCAR+TD
Sbjct: 61 FAYKYPKNKYLGYDALRKNNSPCRRRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116
BLAST of Lag0041084 vs. NCBI nr
Match:
XP_004150814.1 (protein RALF-like 4 [Cucumis sativus] >KGN47203.1 hypothetical protein Csa_020789 [Cucumis sativus])
HSP 1 Score: 124.4 bits (311), Expect = 6.5e-25
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 0
Query: 4 IKLCLFLVLIVVATA-PRSSAIKDRFRAYGNPEFAYFGVNIVPASLD--KDSGRLLFQYG 63
+KL L L+L+V A A A+ D RAYGNP++A++G PA+++ DS RLLFQYG
Sbjct: 1 MKLGLCLLLLVAAIAITLPVALCDWTRAYGNPDYAFWG-TAEPATINDVDDSRRLLFQYG 60
Query: 64 YKYKYPPSKYISYEALKANNIPCGKRGASYYHCVKRIKANPYTRGCSFRTGCARYTD 118
+ YKYP +KY+ Y+AL+ NN PC RG SYY C KR KANPY RGC TGCAR+TD
Sbjct: 61 FAYKYPKNKYLGYDALRKNNSPCRHRGHSYYDCTKRRKANPYRRGCIAITGCARFTD 116
BLAST of Lag0041084 vs. NCBI nr
Match:
XP_004148669.1 (protein RALF-like 19 [Cucumis sativus])
HSP 1 Score: 123.6 bits (309), Expect = 1.1e-24
Identity = 64/119 (53.78%), Postives = 79/119 (66.39%), Query Frame = 0
Query: 1 MGPIKLCLFLVLIVVATAPRSSAIKDRF-RAYGN-PEFAYFGVNIVPASLDKDSGRLLFQ 60
M KLCLFL+LI V AP A+ D + R+Y + P++ + N +DS RLLFQ
Sbjct: 1 MRSTKLCLFLLLIAVVAAPLCLALSDDWTRSYADVPDYDFTNSN-------EDSRRLLFQ 60
Query: 61 YGYKYKYPPSKYISYEALKANNIPCGKRGASYYHCVKRIKANPYTRGCSFRTGCARYTD 118
YG+ YKYP +KY+ Y+AL+ NNIPC RG SYY C KR KANPY RGC TGCAR+TD
Sbjct: 61 YGFAYKYPKNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCARFTD 112
BLAST of Lag0041084 vs. NCBI nr
Match:
XP_022925244.1 (protein RALF-like 31 [Cucurbita moschata] >KAG6595448.1 Protein RALF-like 4, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 121.3 bits (303), Expect = 5.5e-24
Identity = 65/119 (54.62%), Postives = 79/119 (66.39%), Query Frame = 0
Query: 1 MGPIKLCLFLVLIVVATAPRSSAIKDRFRAYGNPEFAYFGVNIVPASLDKDSGRLLFQYG 60
MG +KLCL L+L+VVA AP S Y P++A+FG PA L +D RLLFQYG
Sbjct: 1 MGFMKLCLCLLLMVVAAAPPYS--------YAAPDYAFFG-GYAPAQLTEDGRRLLFQYG 60
Query: 61 Y--KYKYPPSKYISYEALKANNIPCGKRGASYYHCVKRIKANPYTRGCSFRTGCARYTD 118
Y K +Y+SYEAL NNIPCG+RG+SYY C KR + NPY RGC+ TGCAR+TD
Sbjct: 61 YDRTNKMYRRRYLSYEALTFNNIPCGRRGSSYYDCRKRRRINPYRRGCTAITGCARFTD 110
BLAST of Lag0041084 vs. ExPASy Swiss-Prot
Match:
Q9FZA0 (Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=1 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 1.1e-11
Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 0
Query: 1 MGPIKLCLFLVLIVVATAPRSSAIKDRFRAYGNPEFAYFGVNIVPASLDKDSGRLLFQYG 60
MG L +F +LI+ A +A ++ N + + + + +D ++ R G
Sbjct: 1 MGVKMLLIFGLLILAMVAKSVNATYPLTKSCINGQGCIGEDDELESLMDSETNRRQLARG 60
Query: 61 YKYKYPPSKYISYEALKANNIPCGKRGASYYHCVKRIKANPYTRGCSFRTGCARY 116
+YI Y+ALK NN+PC +RG SYY C KR + NPY RGCS T C RY
Sbjct: 61 -------RRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 108
BLAST of Lag0041084 vs. ExPASy Swiss-Prot
Match:
Q6NME6 (Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1)
HSP 1 Score: 68.9 bits (167), Expect = 4.2e-11
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0
Query: 70 YISYEALKANNIPCGKRGASYYHCVKRIKANPYTRGCSFRTGCARYT 117
YISY AL+ NN+PC +RG SYY C KR +ANPY RGCS T C R T
Sbjct: 63 YISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYRQT 109
BLAST of Lag0041084 vs. ExPASy Swiss-Prot
Match:
Q8L9P8 (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)
HSP 1 Score: 67.0 bits (162), Expect = 1.6e-10
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 0
Query: 68 SKYISYEALKANNIPCGKRGASYYHCVKRIKANPYTRGCSFRTGCAR 115
+KYISY AL+ N +PC +RGASYY+C + +ANPY+RGCS T C R
Sbjct: 70 TKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 116
BLAST of Lag0041084 vs. ExPASy Swiss-Prot
Match:
Q9MA62 (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1)
HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 0
Query: 69 KYISYEALKANNIPCGKRGASYYHCVKRIKANPYTRGCSFRTGCAR 115
KYISY A++ N++PC +RGASYY+C + +ANPY+RGCS T C R
Sbjct: 74 KYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119
BLAST of Lag0041084 vs. ExPASy Swiss-Prot
Match:
Q9LUS7 (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)
HSP 1 Score: 65.9 bits (159), Expect = 3.6e-10
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0
Query: 69 KYISYEALKANNIPCGKRGASYYHCVKRIKANPYTRGCSFRTGCAR 115
+YISY AL+ N IPC +RGASYY+C + +ANPY+RGCS T C R
Sbjct: 92 RYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038876152.1 | 8.7e-30 | 57.26 | uncharacterized protein LOC120068449 [Benincasa hispida] | [more] |
XP_016902249.1 | 1.8e-27 | 57.26 | PREDICTED: protein RALF-like 4 [Cucumis melo] >KAA0033467.1 protein RALF-like 4 ... | [more] |
XP_004150814.1 | 6.5e-25 | 55.56 | protein RALF-like 4 [Cucumis sativus] >KGN47203.1 hypothetical protein Csa_02078... | [more] |
XP_004148669.1 | 1.1e-24 | 53.78 | protein RALF-like 19 [Cucumis sativus] | [more] |
XP_022925244.1 | 5.5e-24 | 54.62 | protein RALF-like 31 [Cucurbita moschata] >KAG6595448.1 Protein RALF-like 4, par... | [more] |
Match Name | E-value | Identity | Description | |
Q9FZA0 | 1.1e-11 | 35.65 | Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=1 SV=1 | [more] |
Q6NME6 | 4.2e-11 | 63.83 | Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1 | [more] |
Q8L9P8 | 1.6e-10 | 59.57 | Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1 | [more] |
Q9MA62 | 2.1e-10 | 58.70 | Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1 | [more] |
Q9LUS7 | 3.6e-10 | 60.87 | Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV... | [more] |