Lag0040375 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0040375
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description3-oxo-5-alpha-steroid 4-dehydrogenase 1-like
Locationchr13: 4286397 .. 4288229 (-)
RNA-Seq ExpressionLag0040375
SyntenyLag0040375
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATTTTGTCGGCGTTTCTTTTCCCGCCGCCTCCTTCCACGTTCGTGAACGTGATGACGGTGGTGAGCTCGTTGGCGATGACGAGTGCAGGGATTTCCGAGATTAACGATAAGCATTTGCAGTATTCCAAGTTCTGGAATAGTGCTCCGAAAGCTTCGTCTGAGGTATCTAAGCTTTCGAGCAGATATGGAATGCTCTTGGCTTATACTCCGGCGTTTCTCGCCGGAGCGGCGTCGTTTTGGTTCTTTCCGAGCGGCAATGAGAGGATTCTTCTGCTTAAATCTGCTCTTACTTTCCATTTCTTCAAGAGGATCTTTGAGGTACGCTCTCTGTTTCTCTTTACGCCTACGATTGAGTTCTGAAATTTCGATCTGATTCTGGAAATAGGTATAGTAGGACTCGGTTTCATCTCTGATGTTCTTGATTAGCTATTCATATCATCGTAACTGTTAGAATCAGTTAGATTGGGGCTATATGAAGAAACTGTTAATCTTATTCTTCGAAATTTTCTCGAGTTCTTACAAAACTATATGAAAATTCGCCAGCGCAGAGAAAATGGTGGAGAGATCTGCATCTCTTCTCTCTTCTCTGTATCTTATCATTCCTCTGGAAGAATGGGAAGATTCTTAACCTATCTAGACTTATTATTATTATTATTATTATTATTATTATCATCGTCGTATGAAGTATGAACTTGATTAATCATCCGCTCATAAAAATCTGAGTTTATTAATTTTTCCTCTTTGACTATTGAATTGTCGTTAAGATATTCTTTGAGTCAACTCTGCGTAGAACAAGTTTTTCAAAATTCTTGATATATAAAGTTGTATGTTTAATAAAGACAAATTAGCACGATTCTGTTTAACAATTATTTTGTTGTTATGTTTTGGGTATTTTAAATTCTGTTTCACTAATCACGAGATAATCTGTACTGCTTATACCTTTCATTCGTGGCACTATTATTTTACAAACATCCACAATAAAAGCCCAAGAGAAAATCAAATTCATCATGTGTCCAAGATTTAATATCCTATGAGTTATATTGATAGCAGGGTCTGTGATTTCTTGCGAGAATAGTCAAGTTGCATGCAAATGATCCTAACACACACGGATGTTTAAAAAAAAGAAAAATCCGTTGTTTTGCAAACAATTTGAAGATTCCTTTCATATTATAGGAACTATTCTTTTTCATTCTTCAACTATAACAGGATGGAGGTTGAACTATGGACTTTGAAACGATAATAGATATCTCATTCACTGAATTATGTTTAGATTGGCAAATTAGTAAAGCTACGTAGATAACAACAAAACAAAAACCTGACATAGATGCATCGTGACAAAATTTCAATTCTTCACAGGTACTGTTTATTCACAAATACAGCAGTAAAATGGTACTGGATACAGCAATCAAGATCTCCCTCAGCTACTTCATGTCCACAGCAATCATGATATACACTCAGCACCTATCACTCGGGCTTCCAGAGCCAGCCATTGATCTGAAAAACATTGGGATTGCTTTGTTTTTGATAGGCATCATTGGGAACTTCTACCACCACTTTCTCTTGTCCAGAACAAGAAAAGGAGGAGAAACAGACTACAAAATTCCCACAGGAGGCCTCTTCAGCCTTGTGATCTGCCCTCACTATCTGTTTGAAATAATTGAGTTTTTTGGATTTGCTTTCATCTCTCAGGAACTCTATCCTCTGTGCTTCACCATTGGCACCAGTATCTACTTGGCTGGGAGGAGCTATGCCACTAGAAAATGGTACATCTCCAAATTTGAAAATTTCCCCAAGCATGTTAAATCCCTGCTCCCTTTTGTGTTTTAG

mRNA sequence

ATGGACATTTTGTCGGCGTTTCTTTTCCCGCCGCCTCCTTCCACGTTCGTGAACGTGATGACGGTGGTGAGCTCGTTGGCGATGACGAGTGCAGGGATTTCCGAGATTAACGATAAGCATTTGCAGTATTCCAAGTTCTGGAATAGTGCTCCGAAAGCTTCGTCTGAGGTATCTAAGCTTTCGAGCAGATATGGAATGCTCTTGGCTTATACTCCGGCGTTTCTCGCCGGAGCGGCGTCGTTTTGGTTCTTTCCGAGCGGCAATGAGAGGATTCTTCTGCTTAAATCTGCTCTTACTTTCCATTTCTTCAAGAGGATCTTTGAGGTACTGTTTATTCACAAATACAGCAGTAAAATGGTACTGGATACAGCAATCAAGATCTCCCTCAGCTACTTCATGTCCACAGCAATCATGATATACACTCAGCACCTATCACTCGGGCTTCCAGAGCCAGCCATTGATCTGAAAAACATTGGGATTGCTTTGTTTTTGATAGGCATCATTGGGAACTTCTACCACCACTTTCTCTTGTCCAGAACAAGAAAAGGAGGAGAAACAGACTACAAAATTCCCACAGGAGGCCTCTTCAGCCTTGTGATCTGCCCTCACTATCTGTTTGAAATAATTGAGTTTTTTGGATTTGCTTTCATCTCTCAGGAACTCTATCCTCTGTGCTTCACCATTGGCACCAGTATCTACTTGGCTGGGAGGAGCTATGCCACTAGAAAATGGTACATCTCCAAATTTGAAAATTTCCCCAAGCATGTTAAATCCCTGCTCCCTTTTGTGTTTTAG

Coding sequence (CDS)

ATGGACATTTTGTCGGCGTTTCTTTTCCCGCCGCCTCCTTCCACGTTCGTGAACGTGATGACGGTGGTGAGCTCGTTGGCGATGACGAGTGCAGGGATTTCCGAGATTAACGATAAGCATTTGCAGTATTCCAAGTTCTGGAATAGTGCTCCGAAAGCTTCGTCTGAGGTATCTAAGCTTTCGAGCAGATATGGAATGCTCTTGGCTTATACTCCGGCGTTTCTCGCCGGAGCGGCGTCGTTTTGGTTCTTTCCGAGCGGCAATGAGAGGATTCTTCTGCTTAAATCTGCTCTTACTTTCCATTTCTTCAAGAGGATCTTTGAGGTACTGTTTATTCACAAATACAGCAGTAAAATGGTACTGGATACAGCAATCAAGATCTCCCTCAGCTACTTCATGTCCACAGCAATCATGATATACACTCAGCACCTATCACTCGGGCTTCCAGAGCCAGCCATTGATCTGAAAAACATTGGGATTGCTTTGTTTTTGATAGGCATCATTGGGAACTTCTACCACCACTTTCTCTTGTCCAGAACAAGAAAAGGAGGAGAAACAGACTACAAAATTCCCACAGGAGGCCTCTTCAGCCTTGTGATCTGCCCTCACTATCTGTTTGAAATAATTGAGTTTTTTGGATTTGCTTTCATCTCTCAGGAACTCTATCCTCTGTGCTTCACCATTGGCACCAGTATCTACTTGGCTGGGAGGAGCTATGCCACTAGAAAATGGTACATCTCCAAATTTGAAAATTTCCCCAAGCATGTTAAATCCCTGCTCCCTTTTGTGTTTTAG

Protein sequence

MDILSAFLFPPPPSTFVNVMTVVSSLAMTSAGISEINDKHLQYSKFWNSAPKASSEVSKLSSRYGMLLAYTPAFLAGAASFWFFPSGNERILLLKSALTFHFFKRIFEVLFIHKYSSKMVLDTAIKISLSYFMSTAIMIYTQHLSLGLPEPAIDLKNIGIALFLIGIIGNFYHHFLLSRTRKGGETDYKIPTGGLFSLVICPHYLFEIIEFFGFAFISQELYPLCFTIGTSIYLAGRSYATRKWYISKFENFPKHVKSLLPFVF
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022957108.13.3e-12587.593-oxo-5-alpha-steroid 4-dehydrogenase 1-like [Cucurbita moschata][more]
XP_022984951.15.6e-12587.223-oxo-5-alpha-steroid 4-dehydrogenase 1-like [Cucurbita maxima][more]
KAG7032032.11.6e-12487.223-oxo-5-alpha-steroid 4-dehydrogenase 1 [Cucurbita argyrosperma subsp. argyrospe... [more]
XP_023528760.11.6e-12487.593-oxo-5-alpha-steroid 4-dehydrogenase 1-like [Cucurbita pepo subsp. pepo][more]
XP_038891781.11.0e-12386.093-oxo-5-alpha-steroid 4-dehydrogenase 2-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q288912.3e-1741.123-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Macaca fascicularis OX=9541 GN=SRD5A1... [more]
P184056.8e-1740.193-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Homo sapiens OX=9606 GN=SRD5A1 PE=1 S... [more]
Q68FF91.5e-1641.903-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Mus musculus OX=10090 GN=Srd5a1 PE=2 ... [more]
P240081.5e-1642.863-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Rattus norvegicus OX=10116 GN=Srd5a1 ... [more]
Q2QDF63.4e-1631.50Steroid 5-alpha-reductase DET2 OS=Gossypium hirsutum OX=3635 GN=DET2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1GZA31.6e-12587.593-oxo-5-alpha-steroid 4-dehydrogenase 1-like OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1J6R32.7e-12587.223-oxo-5-alpha-steroid 4-dehydrogenase 1-like OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A1S3BFS01.3e-11983.083-oxo-5-alpha-steroid 4-dehydrogenase 2-like OS=Cucumis melo OX=3656 GN=LOC10348... [more]
A0A6J1DAI67.1e-11880.83very-long-chain enoyl-CoA reductase-like OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A0A0KTC71.3e-10877.07S5A_REDUCTASE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G6128... [more]
Match NameE-valueIdentityDescription
AT5G16010.14.6e-8557.093-oxo-5-alpha-steroid 4-dehydrogenase family protein [more]
AT2G38050.17.2e-1438.893-oxo-5-alpha-steroid 4-dehydrogenase family protein [more]
AT3G55360.15.2e-1231.213-oxo-5-alpha-steroid 4-dehydrogenase family protein [more]
AT1G72590.11.2e-0833.913-oxo-5-alpha-steroid 4-dehydrogenase family protein [more]
AT2G16530.15.9e-0833.333-oxo-5-alpha-steroid 4-dehydrogenase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0011043-oxo-5-alpha-steroid 4-dehydrogenase, C-terminalPFAMPF02544Steroid_dhcoord: 156..264
e-value: 1.5E-28
score: 99.7
IPR0011043-oxo-5-alpha-steroid 4-dehydrogenase, C-terminalPROSITEPS50244S5A_REDUCTASEcoord: 159..239
score: 25.431198
NoneNo IPR availableGENE3D1.20.120.1630coord: 89..263
e-value: 1.4E-7
score: 33.4
NoneNo IPR availablePANTHERPTHR10556:SF353-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE FAMILY PROTEINcoord: 6..264
IPR0393573-oxo-5-alpha-steroid 4-dehydrogenase/very-long-chain enoyl-CoA reductasePANTHERPTHR105563-OXO-5-ALPHA-STEROID 4-DEHYDROGENASEcoord: 6..264

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0040375.1Lag0040375.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors