Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCAAGCTTTACTGTCCCACGTTCAAAATCTTCCAAATCAACAATACAAGAAAAGGCTCCCACCATTGTCGAGTGCCGCAACAAAGCTCAGTGGACAGCTCGTTTCGAAGCCACAAAGGAAACAAACAAGCTTGTAAGTTTTCATATGAACTTTCAATCCCCAACATATGGTAATGCATGCTTCGGCTTTGTCGAGCTTATTGTACTTGGTGATTTGTTGTGCTGCTGGTTTGGTATAGATGGTGATTGATTTCACTGCTACTTGGTGTGGGCCTTGTCGACACATGGAGCCAACCATCAAGGAGTTTGCTGCAAGGTTCAAGGACGTCGAGTTCATCAAAATCGACGTCGATGAGTTGACGGTAGGAGCTTTCAATCTTGTTTTGTCTGTGTTTTGTTTTTTGGTTCAGTGGATGAGTTGAAACGTTACCGTGTTGACAACAGGATGTTGCAAAGGAATATGGCGTGGAGGCAATGCCAACATTCATACTGATCAAGAACGGGAAAGTAATTGATAAGGTGGTCGGAGCCAGGAGGGAAGACCTGCAGAAGAAGATTGAGAAACATAGTAAATATTGA
mRNA sequence
ATGGGAGCAAGCTTTACTGTCCCACGTTCAAAATCTTCCAAATCAACAATACAAGAAAAGGCTCCCACCATTGTCGAGTGCCGCAACAAAGCTCAGTGGACAGCTCGTTTCGAAGCCACAAAGGAAACAAACAAGCTTATGGTGATTGATTTCACTGCTACTTGGTGTGGGCCTTGTCGACACATGGAGCCAACCATCAAGGAGTTTGCTGCAAGGTTCAAGGACGTCGAGTTCATCAAAATCGACGTCGATGAGTTGACGGATGTTGCAAAGGAATATGGCGTGGAGGCAATGCCAACATTCATACTGATCAAGAACGGGAAAGTAATTGATAAGGTGGTCGGAGCCAGGAGGGAAGACCTGCAGAAGAAGATTGAGAAACATAGTAAATATTGA
Coding sequence (CDS)
ATGGGAGCAAGCTTTACTGTCCCACGTTCAAAATCTTCCAAATCAACAATACAAGAAAAGGCTCCCACCATTGTCGAGTGCCGCAACAAAGCTCAGTGGACAGCTCGTTTCGAAGCCACAAAGGAAACAAACAAGCTTATGGTGATTGATTTCACTGCTACTTGGTGTGGGCCTTGTCGACACATGGAGCCAACCATCAAGGAGTTTGCTGCAAGGTTCAAGGACGTCGAGTTCATCAAAATCGACGTCGATGAGTTGACGGATGTTGCAAAGGAATATGGCGTGGAGGCAATGCCAACATTCATACTGATCAAGAACGGGAAAGTAATTGATAAGGTGGTCGGAGCCAGGAGGGAAGACCTGCAGAAGAAGATTGAGAAACATAGTAAATATTGA
Protein sequence
MGASFTVPRSKSSKSTIQEKAPTIVECRNKAQWTARFEATKETNKLMVIDFTATWCGPCRHMEPTIKEFAARFKDVEFIKIDVDELTDVAKEYGVEAMPTFILIKNGKVIDKVVGARREDLQKKIEKHSKY
Homology
BLAST of Lag0040063 vs. NCBI nr
Match:
XP_022151175.1 (thioredoxin H4-like [Momordica charantia])
HSP 1 Score: 244.2 bits (622), Expect = 6.3e-61
Identity = 118/131 (90.08%), Postives = 125/131 (95.42%), Query Frame = 0
Query: 1 MGASFTVPRSKSSKSTIQEKAPTIVECRNKAQWTARFEATKETNKLMVIDFTATWCGPCR 60
MGASFTVPRSKSS +T+Q KAPTIVEC K QWTARFEA+KETNKL+VIDFTATWCGPCR
Sbjct: 22 MGASFTVPRSKSSNATLQAKAPTIVECHTKPQWTARFEASKETNKLLVIDFTATWCGPCR 81
Query: 61 HMEPTIKEFAARFKDVEFIKIDVDELTDVAKEYGVEAMPTFILIKNGKVIDKVVGARRED 120
HMEPTIKEFAARF DVEF+KIDVDELTDVA+EYGVEAMPTFILIKNGKVIDKVVGAR+ED
Sbjct: 82 HMEPTIKEFAARFVDVEFVKIDVDELTDVAREYGVEAMPTFILIKNGKVIDKVVGARKED 141
Query: 121 LQKKIEKHSKY 132
LQKKIEKHSKY
Sbjct: 142 LQKKIEKHSKY 152
BLAST of Lag0040063 vs. NCBI nr
Match:
XP_004135204.1 (thioredoxin H-type [Cucumis sativus] >KGN51870.1 hypothetical protein Csa_007853 [Cucumis sativus])
HSP 1 Score: 243.8 bits (621), Expect = 8.2e-61
Identity = 118/131 (90.08%), Postives = 124/131 (94.66%), Query Frame = 0
Query: 1 MGASFTVPRSKSSKSTIQEKAPTIVECRNKAQWTARFEATKETNKLMVIDFTATWCGPCR 60
MGASFTVPRSKSS + IQ+K PTI+EC +KAQWTARFEATKETNKLMVIDFTA WCGPCR
Sbjct: 1 MGASFTVPRSKSSNAMIQQKPPTIIECHDKAQWTARFEATKETNKLMVIDFTAAWCGPCR 60
Query: 61 HMEPTIKEFAARFKDVEFIKIDVDELTDVAKEYGVEAMPTFILIKNGKVIDKVVGARRED 120
HMEPTIKE AARFKDVEF+KIDVDEL DVAKEYGVEAMPTFILIKNGKVIDKVVGARR+D
Sbjct: 61 HMEPTIKELAARFKDVEFVKIDVDELMDVAKEYGVEAMPTFILIKNGKVIDKVVGARRDD 120
Query: 121 LQKKIEKHSKY 132
LQKKIEKHSKY
Sbjct: 121 LQKKIEKHSKY 131
BLAST of Lag0040063 vs. NCBI nr
Match:
XP_038892719.1 (thioredoxin H4-like [Benincasa hispida])
HSP 1 Score: 243.4 bits (620), Expect = 1.1e-60
Identity = 118/131 (90.08%), Postives = 124/131 (94.66%), Query Frame = 0
Query: 1 MGASFTVPRSKSSKSTIQEKAPTIVECRNKAQWTARFEATKETNKLMVIDFTATWCGPCR 60
MGASFTVPRSKSS +T+Q K P IVECRNKAQWTARFEATKETNKLMVIDFTA WCGPCR
Sbjct: 1 MGASFTVPRSKSSNATLQPKTPIIVECRNKAQWTARFEATKETNKLMVIDFTAAWCGPCR 60
Query: 61 HMEPTIKEFAARFKDVEFIKIDVDELTDVAKEYGVEAMPTFILIKNGKVIDKVVGARRED 120
HMEP IKEFAARFKDVEF+KIDVDEL DVA+EYGVEAMPTFILIKNGKV+DKVVGARRED
Sbjct: 61 HMEPIIKEFAARFKDVEFVKIDVDELMDVAQEYGVEAMPTFILIKNGKVVDKVVGARRED 120
Query: 121 LQKKIEKHSKY 132
LQKKIEK+SKY
Sbjct: 121 LQKKIEKYSKY 131
BLAST of Lag0040063 vs. NCBI nr
Match:
KAG6574117.1 (Thioredoxin H2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013177.1 Thioredoxin H2 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 237.7 bits (605), Expect = 5.9e-59
Identity = 114/131 (87.02%), Postives = 124/131 (94.66%), Query Frame = 0
Query: 1 MGASFTVPRSKSSKSTIQEKAPTIVECRNKAQWTARFEATKETNKLMVIDFTATWCGPCR 60
MGASFTVPRS+SS ++++ KAPTIVEC NKA+WTA +EATKETNKLMVIDFTA WC PCR
Sbjct: 1 MGASFTVPRSRSSSTSLKGKAPTIVECHNKAEWTAHYEATKETNKLMVIDFTAAWCAPCR 60
Query: 61 HMEPTIKEFAARFKDVEFIKIDVDELTDVAKEYGVEAMPTFILIKNGKVIDKVVGARRED 120
HMEPTIKEFAARFKDVEFIKIDVD LTDVAKEYGVEAMPTFIL+KNGKV+DKVVGARRED
Sbjct: 61 HMEPTIKEFAARFKDVEFIKIDVDTLTDVAKEYGVEAMPTFILLKNGKVVDKVVGARRED 120
Query: 121 LQKKIEKHSKY 132
LQKKIEK+SKY
Sbjct: 121 LQKKIEKYSKY 131
BLAST of Lag0040063 vs. NCBI nr
Match:
XP_022945457.1 (thioredoxin H4-like [Cucurbita moschata])
HSP 1 Score: 236.9 bits (603), Expect = 1.0e-58
Identity = 113/131 (86.26%), Postives = 124/131 (94.66%), Query Frame = 0
Query: 1 MGASFTVPRSKSSKSTIQEKAPTIVECRNKAQWTARFEATKETNKLMVIDFTATWCGPCR 60
MGASFT PRS+SS ++++ KAPTIVEC NKA+WTA +EATKETNKLMVIDFTA WC PCR
Sbjct: 1 MGASFTAPRSRSSSTSLKGKAPTIVECHNKAEWTAHYEATKETNKLMVIDFTAAWCAPCR 60
Query: 61 HMEPTIKEFAARFKDVEFIKIDVDELTDVAKEYGVEAMPTFILIKNGKVIDKVVGARRED 120
HMEPTIKEFAARFKDVEFIKIDVD+LTDVAKEYGVEAMPTFIL+KNGKV+DKVVGARRED
Sbjct: 61 HMEPTIKEFAARFKDVEFIKIDVDKLTDVAKEYGVEAMPTFILLKNGKVVDKVVGARRED 120
Query: 121 LQKKIEKHSKY 132
LQKKIEK+SKY
Sbjct: 121 LQKKIEKYSKY 131
BLAST of Lag0040063 vs. ExPASy Swiss-Prot
Match:
Q38879 (Thioredoxin H2 OS=Arabidopsis thaliana OX=3702 GN=TRX2 PE=1 SV=2)
HSP 1 Score: 132.9 bits (333), Expect = 2.7e-30
Identity = 54/104 (51.92%), Postives = 82/104 (78.85%), Query Frame = 0
Query: 24 IVECRNKAQWTARFEATKETNKLMVIDFTATWCGPCRHMEPTIKEFAARFKDVEFIKIDV 83
+++ + A+W F KE+NKL+V+DF+A+WCGPCR +EP I A +F DV+F+K+DV
Sbjct: 27 VLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDV 86
Query: 84 DELTDVAKEYGVEAMPTFILIKNGKVIDKVVGARREDLQKKIEK 128
DEL DVAKE+ V AMPTF+L+K GK I++++GA++++L+KK+ K
Sbjct: 87 DELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130
BLAST of Lag0040063 vs. ExPASy Swiss-Prot
Match:
Q39239 (Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=1 SV=2)
HSP 1 Score: 127.1 bits (318), Expect = 1.5e-28
Identity = 58/107 (54.21%), Postives = 76/107 (71.03%), Query Frame = 0
Query: 24 IVECRNKAQWTARFEATKETNKLMVIDFTATWCGPCRHMEPTIKEFAARF-KDVEFIKID 83
++ C WT + + KE+NKL+VIDFTA+WC PCR + P + A +F F K+D
Sbjct: 8 VIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVD 67
Query: 84 VDELTDVAKEYGVEAMPTFILIKNGKVIDKVVGARREDLQKKIEKHS 130
VDEL VAKE+GVEAMPTF+ IK G+V+DK+VGA +EDLQ KI KH+
Sbjct: 68 VDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHT 114
BLAST of Lag0040063 vs. ExPASy Swiss-Prot
Match:
Q0D840 (Thioredoxin H1 OS=Oryza sativa subsp. japonica OX=39947 GN=TRXH PE=1 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 1.9e-28
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 0
Query: 24 IVECRNKAQWTARFEATKETNKLMVIDFTATWCGPCRHMEPTIKEFAARFKDVEFIKIDV 83
++ C NK ++ A+ KE K+++IDFTA+WCGPCR + P E+A +F F+K+DV
Sbjct: 8 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDV 67
Query: 84 DELTDVAKEYGVEAMPTFILIKNGKVIDKVVGARREDLQKKIEKH 129
DEL +VA++Y VEAMPTF+ IK+G DKVVGAR++DLQ I KH
Sbjct: 68 DELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112
BLAST of Lag0040063 vs. ExPASy Swiss-Prot
Match:
A2YIW7 (Thioredoxin H-type OS=Oryza sativa subsp. indica OX=39946 GN=TRXH PE=1 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 1.9e-28
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 0
Query: 24 IVECRNKAQWTARFEATKETNKLMVIDFTATWCGPCRHMEPTIKEFAARFKDVEFIKIDV 83
++ C NK ++ A+ KE K+++IDFTA+WCGPCR + P E+A +F F+K+DV
Sbjct: 8 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDV 67
Query: 84 DELTDVAKEYGVEAMPTFILIKNGKVIDKVVGARREDLQKKIEKH 129
DEL +VA++Y VEAMPTF+ IK+G DKVVGAR++DLQ I KH
Sbjct: 68 DELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112
BLAST of Lag0040063 vs. ExPASy Swiss-Prot
Match:
Q39362 (Thioredoxin H-type 2 OS=Brassica napus OX=3708 GN=THL-2 PE=2 SV=1)
HSP 1 Score: 123.6 bits (309), Expect = 1.6e-27
Identity = 56/107 (52.34%), Postives = 76/107 (71.03%), Query Frame = 0
Query: 24 IVECRNKAQWTARFEATKETNKLMVIDFTATWCGPCRHMEPTIKEFAARF-KDVEFIKID 83
++ C W + + K++NKL+VIDFTA+WC PCR + P + A +F F K+D
Sbjct: 8 VIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVD 67
Query: 84 VDELTDVAKEYGVEAMPTFILIKNGKVIDKVVGARREDLQKKIEKHS 130
VDEL +VA+E+GVEAMPTF+LIK+G V+DKVVGAR+EDL I KH+
Sbjct: 68 VDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHT 114
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q38879 | 2.7e-30 | 51.92 | Thioredoxin H2 OS=Arabidopsis thaliana OX=3702 GN=TRX2 PE=1 SV=2 | [more] |
Q39239 | 1.5e-28 | 54.21 | Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=1 SV=2 | [more] |
Q0D840 | 1.9e-28 | 52.38 | Thioredoxin H1 OS=Oryza sativa subsp. japonica OX=39947 GN=TRXH PE=1 SV=1 | [more] |
A2YIW7 | 1.9e-28 | 52.38 | Thioredoxin H-type OS=Oryza sativa subsp. indica OX=39946 GN=TRXH PE=1 SV=1 | [more] |
Q39362 | 1.6e-27 | 52.34 | Thioredoxin H-type 2 OS=Brassica napus OX=3708 GN=THL-2 PE=2 SV=1 | [more] |