
Lag0038499 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGCCACCGGGGTTGATGAAGCAGCACTTCCAGATCCTGTAACGCTTCCAGATCCCTTTTCCGCCATGGGAGGAATCGAAGGTGAAAGCTTAGGAGAAGTTGGAAGTTAAAAAACGCGGGAGCGAAAAATTTCGCTCTGATACCATTTCAAGACAGAGAGTAAATAACGATGTTCTCTCGTGAATATTATTCAATAAAGAAGAAGAATATATACAAGGCAATACCAGAGAACTAACTAACTGAATGGAGTTAAATACAAACAATAACTCAACTAACAAGGTTAAGAATAAACTCTGGTTAATATAATCTAACAGACATATCTGTTCCAGAGATTGAAAGAGCTCTTTTTGAAATGAACCCGGAAAAGGCTCCAGGACCGGATGGAATGACAGCTGCTTTTTTCCAAGATAATTGGAAGACCGTACAGAGAGAGGTGATCGATACAGTGAAGTCGTTCTTCATGCATGGGAATGCTGAGGAAGATGAATCACACACACATTGTACTCATTCCGAAGGTGAAACACCCCACTAGAATGGCCCAATTGCGGCCTATAGCATTGTACAACGTTGCGTACAAAATAGTCTCGAAGATCCTCTGTAATAGACTGAAGGGGGTGCTTCCAAAAATTATTAGTGATTGCCAAACAGCGTTTTTCCAGGCCGACTAATATCGGACAATATTCATATTGCACACGAAATACTACATTCGATGAATGGAAAGAGGAGAGGGAACGGGTACACCATGGCGGTAAAGTTAGATATGGCAAAAGCATATGAGCGCATTGAATGGGGCTTTCTTGAAAGGGTGCTCTCAATATTTGGCTTTGACCAAAGATGGATAGGGTGGGTTATGGAATGCATCACATCAGTCTCATATAGTTTGATGGTGAATAATAAGCCGCATGGGTTAATATTACCAGAAAGAGGGCTTCGACAAGGGGACCCGCTATCGCCCTACCTCTTCGTTTTATGTTCAGAAGTTTTCACCTTCTTGCTGCAAAAATCAGCTCTCACTGGCTACGCGGTTTCAAGGAATGGTCCTGCCATATCGAATTTGTTTTCGCTGACGATTCCCTGA ATGGAAGCCACCGGGGTTGATGAAGCAGCACTTCCAGATCCTGTAACGCTTCCAGATCCCTTTTCCGCCATGGGAGGAATCGAAGACATATCTGTTCCAGAGATTGAAAGAGCTCTTTTTGAAATGAACCCGGAAAAGGCTCCAGGACCGGATGGAATGACAGCTGCTTTTTTCCAAGATAATTGGAAGACCGTACAGAGAGAGGTGATCGATACAGTGAAGTCGTTCTTCATGCATGGGAATGCTGAGGAAGATGAATCACACACACATTGTACTCATTCCGAAGGCCGACTAATATCGGACAATATTCATATTGCACACGAAATACTACATTCGATGAATGGAAAGAGGAGAGGGAACGGGTACACCATGGCGGTAAAGTTAGATATGGCAAAAGCATATGAGCGCATTGAATGGGGCTTTCTTGAAAGGGTGCTCTCAATATTTGGCTTTGACCAAAGATGGATAGGGTGGGTTATGGAATGCATCACATCAGTCTCATATAGTTTGATGGTGAATAATAAGCCGCATGGGTTAATATTACCAGAAAGAGGGCTTCGACAAGGGGACCCGCTATCGCCCTACCTCTTCGTTTTATGTTCAGAAGTTTTCACCTTCTTGCTGCAAAAATCAGCTCTCACTGGCTACGCGGTTTCAAGGAATGGTCCTGCCATATCGAATTTGTTTTCGCTGACGATTCCCTGA ATGGAAGCCACCGGGGTTGATGAAGCAGCACTTCCAGATCCTGTAACGCTTCCAGATCCCTTTTCCGCCATGGGAGGAATCGAAGACATATCTGTTCCAGAGATTGAAAGAGCTCTTTTTGAAATGAACCCGGAAAAGGCTCCAGGACCGGATGGAATGACAGCTGCTTTTTTCCAAGATAATTGGAAGACCGTACAGAGAGAGGTGATCGATACAGTGAAGTCGTTCTTCATGCATGGGAATGCTGAGGAAGATGAATCACACACACATTGTACTCATTCCGAAGGCCGACTAATATCGGACAATATTCATATTGCACACGAAATACTACATTCGATGAATGGAAAGAGGAGAGGGAACGGGTACACCATGGCGGTAAAGTTAGATATGGCAAAAGCATATGAGCGCATTGAATGGGGCTTTCTTGAAAGGGTGCTCTCAATATTTGGCTTTGACCAAAGATGGATAGGGTGGGTTATGGAATGCATCACATCAGTCTCATATAGTTTGATGGTGAATAATAAGCCGCATGGGTTAATATTACCAGAAAGAGGGCTTCGACAAGGGGACCCGCTATCGCCCTACCTCTTCGTTTTATGTTCAGAAGTTTTCACCTTCTTGCTGCAAAAATCAGCTCTCACTGGCTACGCGGTTTCAAGGAATGGTCCTGCCATATCGAATTTGTTTTCGCTGACGATTCCCTGA MEATGVDEAALPDPVTLPDPFSAMGGIEDISVPEIERALFEMNPEKAPGPDGMTAAFFQDNWKTVQREVIDTVKSFFMHGNAEEDESHTHCTHSEGRLISDNIHIAHEILHSMNGKRRGNGYTMAVKLDMAKAYERIEWGFLERVLSIFGFDQRWIGWVMECITSVSYSLMVNNKPHGLILPERGLRQGDPLSPYLFVLCSEVFTFLLQKSALTGYAVSRNGPAISNLFSLTIP Homology
BLAST of Lag0038499 vs. NCBI nr
Match: KAG5561220.1 (hypothetical protein RHGRI_004294 [Rhododendron griersonianum]) HSP 1 Score: 199.9 bits (507), Expect = 2.4e-47 Identity = 103/256 (40.23%), Postives = 139/256 (54.30%), Query Frame = 0
BLAST of Lag0038499 vs. NCBI nr
Match: KAG5561219.1 (hypothetical protein RHGRI_004294 [Rhododendron griersonianum]) HSP 1 Score: 199.9 bits (507), Expect = 2.4e-47 Identity = 103/256 (40.23%), Postives = 139/256 (54.30%), Query Frame = 0
BLAST of Lag0038499 vs. NCBI nr
Match: KAG5561218.1 (hypothetical protein RHGRI_004294 [Rhododendron griersonianum]) HSP 1 Score: 199.9 bits (507), Expect = 2.4e-47 Identity = 103/256 (40.23%), Postives = 139/256 (54.30%), Query Frame = 0
BLAST of Lag0038499 vs. NCBI nr
Match: KAG5561221.1 (hypothetical protein RHGRI_004294 [Rhododendron griersonianum]) HSP 1 Score: 199.9 bits (507), Expect = 2.4e-47 Identity = 103/256 (40.23%), Postives = 139/256 (54.30%), Query Frame = 0
BLAST of Lag0038499 vs. NCBI nr
Match: XP_019091159.1 (PREDICTED: uncharacterized protein LOC109128743 [Camelina sativa]) HSP 1 Score: 199.1 bits (505), Expect = 4.1e-47 Identity = 99/221 (44.80%), Postives = 135/221 (61.09%), Query Frame = 0
BLAST of Lag0038499 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 6.5e-11 Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 0
BLAST of Lag0038499 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.6e-09 Identity = 60/240 (25.00%), Postives = 95/240 (39.58%), Query Frame = 0
BLAST of Lag0038499 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2) HSP 1 Score: 53.9 bits (128), Expect = 2.8e-06 Identity = 36/128 (28.12%), Postives = 62/128 (48.44%), Query Frame = 0
BLAST of Lag0038499 vs. ExPASy Swiss-Prot
Match: Q05118 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 6.3e-06 Identity = 31/93 (33.33%), Postives = 48/93 (51.61%), Query Frame = 0
BLAST of Lag0038499 vs. ExPASy TrEMBL
Match: A0A2N9HWM9 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46209 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 7.6e-47 Identity = 106/259 (40.93%), Postives = 145/259 (55.98%), Query Frame = 0
BLAST of Lag0038499 vs. ExPASy TrEMBL
Match: A0A2N9FT83 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21809 PE=4 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 3.8e-46 Identity = 96/200 (48.00%), Postives = 129/200 (64.50%), Query Frame = 0
BLAST of Lag0038499 vs. ExPASy TrEMBL
Match: A0A6D2K102 (RNase H domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS32969 PE=4 SV=1) HSP 1 Score: 194.5 bits (493), Expect = 4.9e-46 Identity = 90/208 (43.27%), Postives = 130/208 (62.50%), Query Frame = 0
BLAST of Lag0038499 vs. ExPASy TrEMBL
Match: A0A2N9H680 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35287 PE=4 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 6.4e-46 Identity = 105/256 (41.02%), Postives = 140/256 (54.69%), Query Frame = 0
BLAST of Lag0038499 vs. ExPASy TrEMBL
Match: A0A2N9J3U0 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59177 PE=4 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 8.4e-46 Identity = 105/249 (42.17%), Postives = 137/249 (55.02%), Query Frame = 0
BLAST of Lag0038499 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) ) HSP 1 Score: 69.3 bits (168), Expect = 4.6e-12 Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 0
BLAST of Lag0038499 vs. TAIR 10
Match: AT4G20520.1 (RNA binding;RNA-directed DNA polymerases ) HSP 1 Score: 55.1 bits (131), Expect = 9.0e-08 Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 0
BLAST of Lag0038499 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein ) HSP 1 Score: 48.5 bits (114), Expect = 8.4e-06 Identity = 23/48 (47.92%), Postives = 28/48 (58.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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