Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCGGAAAAAAGAATAATAGGAAAAAAAAAGGAAGTCACCGGCGGCGACCGACCGTCGGCGACAGCCGCCGCCGGCAGGTGTGCTAGTGGTGGGTTAAAGAACAAGAGGAAGGTTGAAAGAAGAAAGAGGAAGGTTGAAGAAGAAGAAATAAAATTAAAAAAAAACAATATTAATTTATTTTTTAATAAAAAAATAGTGCCACGTTAGCAAACCGTTAGTTTTTAACAGAAAATTGGATGGAGGGACCAAAATGCTACTAAATACAAACCTGATGGACTAAAATGTTGAGTTCGAAACCTCAGGGACCAAAACGAAACCTAAACCAAACCTCAGGGACCAAAAGTGTATTTTACCTATCTTTGAATTATGCTTTGGTGATCCCTCTTTTTTTTTGAAACAATGCTTTGGTGATCCCTCTTCTACTAACTTAGTATTAAAAAAAATTGTATTAAAAAAATTAGGCATTGGAATTCCTGGTTCATATGAAGCCCATTTGTTCAGCAATTATGAAAATCAAGACCATTTCCTCCAGCAAAATACCAATTTATACTATATATTAAAATCGATCTCCGTTTAAATACCAAAGTACAGAACTAGAGAAGCTTTCAATTGGTTGTAACCACTGACATCTGGTTTGATAATAATTTTGTTTCTGATTCTCTGTTTGTTAAATTACATTTCTTTACCGTAGATTTTACTTTGTTCGAAGAAAAACTTGAATCCTTATGAAAATTTCCATTTTTTTTTTCTTTCTTTCTCCTTCAAAAGTTGACTTGGATTTTGAAAATAGTTTTAAAAAGTAGGGGAAAATACACTTTTGGTCCCTGAGGTTTGGGTTAGGTTTCATTTTGCTCCCTCAGTTTTCAAACTCGACATTTTAATCCTTGAGTTTGGATTTTGTTTCATTTTAGTCCATCCGTCCATTTTTCTTTAGAAATTAACGGAATGCTGGTGTGACACCTATTTTTATTTAAAAATATATATTTTAATTTTAAAATAAAAATAATATTAAATTAATAAAAATTATTATTTTATTACTTTTTTTTTTTTTTACTTCTTCATCTCTCTTCCTCCCCTCCTTCTTTCTTTTTCTTCCTCTTCTTTTTTTCCTCTAGTCTGGCGGGACCGCCAGCCGCCGCCGCCGACAGCCGGTTGCCACCATCATTTTTTTTGTTGTCTTTTCTTCTCTTTCTTTCTTCTTCTTTTCCTTCTCCTTATTTTCTTTCTTTCTTCTTCTTCTTCTTCTTCTTTTTTTTGTTAAAATCCAAACAGAGGACGGAGAACCCTCCTCCCTCCTTTGTTCCTTTTTTTTAAAAAGAAAAACTAGTGAAAGAAAGGGAAGTGAGGAAGAGGGAAGAAGAAGAAAAAGGGGAGAAAAGAGGGAAGAAGAAGAAAAAAAAAGGAGAAAAAAGAGGAAAAAAGGGAATGGCGGTGGCGGCGACCGACAACTAGAGGTAGTGGTGGCTGCCAAGTGAATTGACATTAGGTTTTGAGAGTGGTGGAGAATAAGATCAAGGAAGAAGATGGAAGAGGAAAAAGAAAAGAAAAAATAAAAAAAGAAAAAAAAATAATAAAAAAGTATTTAATATATTATTTTATTTTACAAATAAAAAATATATTTTTTAAATAAAAAAAACTAATGTCATATTAGCAATTTGTTAGTGTTTAATAGAAAGATTTATTGAGGGACCAAGGGTGTAACAAAATCCAAATCTCAGGGACTAAAATGTCGGGTTTGAAAACTACCAAAATGAAACCTAACCCAAACCTTCGGGACCAAAAATGTATTTTTCCCTAAAAAAAAATCAAATGGTTAGTAAATGATTTTTTTAGTTTTCAATCACCACGTCACCCGTCAAAGTTTTAGTGTATGTTTGAAATGAGTCTTTAAGTGTTTAATTTTTTTTCTTTTACATTTAAAAATACTTTTTTAAACACTTAGAAAGTCATGTCAAATGGATCCTTAATTTTCTTAACGAACCTTCTATTAATATGCTTTATAGCAATATACTTATAATTATAATTGAAGAAATAATAGGCAGAAATAAAACCTTCACATTGACAAAGTGAACATAGCTTAGTAGTAATTGACATGTAATCTCGATCAAGAGGTTAGAGGTTTGAATCCACGTCCCAAATGTTGTTCACCTAAAGAAAATAAATAAATAAACCTTCCCACTTTCTTTCAAAAAAAAAAGAAAAAAAAAAGTAGACTGCTATTATCAACGAAATGACAGATTGTAGCAGCAAAAATGTAGCAAAGAAGAGAAACTGTTTATAAAAAAAGTGCTTTCTTTTATTTTTAAAGATCCCTCTTCCTTCATTTTGATCATTCCCACCATGTCATGTGTTTCATAACAAATTTGTGCAGCTTGCCCTGTGAGCTTTGAATTTTTGAACTACACAATCATCACAAGCAAATGCAAAGGGCCTCTATATTCTCCAAAGCTATGTTGTTCAGCTCTTACAGAATTCTCTTGCCCTTATGCTGATGCTGTGAATGATATGACAACTAATTGTGCTTCAACCATGTTTAGCTACATTAACCTCCATGGAAAGTACCCGCCTGGCCTTTTCTCGAACGTGTGTCGAGAAGGAGATCGAGGTCTTGCCTGCCCTCTATTGCCAGATCCATCTGATCCAAGCTCGACTCCGCTCTCGAAACGTCCATCTCTCGCAATCATCATTGGTTCTGGACTTGTACTTCTCTTGTTATACCTTTTGTGA
mRNA sequence
ATGGAGGCGGAAAAAAGAATAATAGGAAAAAAAAAGGAAGTCACCGGCGGCGACCGACCGTCGGCGACAGCCGCCGCCGGCAGGTGTGCTAGTGCTTGCCCTGTGAGCTTTGAATTTTTGAACTACACAATCATCACAAGCAAATGCAAAGGGCCTCTATATTCTCCAAAGCTATGTTGTTCAGCTCTTACAGAATTCTCTTGCCCTTATGCTGATGCTGTGAATGATATGACAACTAATTGTGCTTCAACCATGTTTAGCTACATTAACCTCCATGGAAAGTACCCGCCTGGCCTTTTCTCGAACGTGTGTCGAGAAGGAGATCGAGGTCTTGCCTGCCCTCTATTGCCAGATCCATCTGATCCAAGCTCGACTCCGCTCTCGAAACGTCCATCTCTCGCAATCATCATTGGTTCTGGACTTGTACTTCTCTTGTTATACCTTTTGTGA
Coding sequence (CDS)
ATGGAGGCGGAAAAAAGAATAATAGGAAAAAAAAAGGAAGTCACCGGCGGCGACCGACCGTCGGCGACAGCCGCCGCCGGCAGGTGTGCTAGTGCTTGCCCTGTGAGCTTTGAATTTTTGAACTACACAATCATCACAAGCAAATGCAAAGGGCCTCTATATTCTCCAAAGCTATGTTGTTCAGCTCTTACAGAATTCTCTTGCCCTTATGCTGATGCTGTGAATGATATGACAACTAATTGTGCTTCAACCATGTTTAGCTACATTAACCTCCATGGAAAGTACCCGCCTGGCCTTTTCTCGAACGTGTGTCGAGAAGGAGATCGAGGTCTTGCCTGCCCTCTATTGCCAGATCCATCTGATCCAAGCTCGACTCCGCTCTCGAAACGTCCATCTCTCGCAATCATCATTGGTTCTGGACTTGTACTTCTCTTGTTATACCTTTTGTGA
Protein sequence
MEAEKRIIGKKKEVTGGDRPSATAAAGRCASACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYINLHGKYPPGLFSNVCREGDRGLACPLLPDPSDPSSTPLSKRPSLAIIIGSGLVLLLLYLL
Homology
BLAST of Lag0038221 vs. NCBI nr
Match:
XP_023525702.1 (GPI-anchored protein LLG1-like isoform X4 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 211.5 bits (537), Expect = 5.1e-51
Identity = 99/114 (86.84%), Postives = 105/114 (92.11%), Query Frame = 0
Query: 31 SACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYIN 90
SACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTE SCPY D +NDMTT CASTMFSYIN
Sbjct: 26 SACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTELSCPYVDVMNDMTTLCASTMFSYIN 85
Query: 91 LHGKYPPGLFSNVCREGDRGLACPLLPDPSDPSSTPLSKRPSLAIIIGSGLVLL 145
LHGKYPPGLFS++CREGD+GLACP LP PS P+STPLSKRPS AII+ SGLVLL
Sbjct: 86 LHGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKRPSPAIIVASGLVLL 139
BLAST of Lag0038221 vs. NCBI nr
Match:
XP_023525699.1 (GPI-anchored protein LLG1-like isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 209.9 bits (533), Expect = 1.5e-50
Identity = 98/113 (86.73%), Postives = 104/113 (92.04%), Query Frame = 0
Query: 32 ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYINL 91
ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTE SCPY D +NDMTT CASTMFSYINL
Sbjct: 52 ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTELSCPYVDVMNDMTTLCASTMFSYINL 111
Query: 92 HGKYPPGLFSNVCREGDRGLACPLLPDPSDPSSTPLSKRPSLAIIIGSGLVLL 145
HGKYPPGLFS++CREGD+GLACP LP PS P+STPLSKRPS AII+ SGLVLL
Sbjct: 112 HGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKRPSPAIIVASGLVLL 164
BLAST of Lag0038221 vs. NCBI nr
Match:
XP_023525701.1 (GPI-anchored protein LLG1-like isoform X3 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 209.9 bits (533), Expect = 1.5e-50
Identity = 98/113 (86.73%), Postives = 104/113 (92.04%), Query Frame = 0
Query: 32 ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYINL 91
ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTE SCPY D +NDMTT CASTMFSYINL
Sbjct: 46 ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTELSCPYVDVMNDMTTLCASTMFSYINL 105
Query: 92 HGKYPPGLFSNVCREGDRGLACPLLPDPSDPSSTPLSKRPSLAIIIGSGLVLL 145
HGKYPPGLFS++CREGD+GLACP LP PS P+STPLSKRPS AII+ SGLVLL
Sbjct: 106 HGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKRPSPAIIVASGLVLL 158
BLAST of Lag0038221 vs. NCBI nr
Match:
XP_023525700.1 (GPI-anchored protein LLG1-like isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 209.9 bits (533), Expect = 1.5e-50
Identity = 98/113 (86.73%), Postives = 104/113 (92.04%), Query Frame = 0
Query: 32 ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYINL 91
ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTE SCPY D +NDMTT CASTMFSYINL
Sbjct: 48 ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTELSCPYVDVMNDMTTLCASTMFSYINL 107
Query: 92 HGKYPPGLFSNVCREGDRGLACPLLPDPSDPSSTPLSKRPSLAIIIGSGLVLL 145
HGKYPPGLFS++CREGD+GLACP LP PS P+STPLSKRPS AII+ SGLVLL
Sbjct: 108 HGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKRPSPAIIVASGLVLL 160
BLAST of Lag0038221 vs. NCBI nr
Match:
KAG7037291.1 (GPI-anchored protein LLG1 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 203.4 bits (516), Expect = 1.4e-48
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = 0
Query: 31 SACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYIN 90
SACPVSFEFLNYTIITSKCKGPLYSP+LCCSALTE SCPY D +NDMTT CASTMFSYIN
Sbjct: 28 SACPVSFEFLNYTIITSKCKGPLYSPELCCSALTELSCPYVDVMNDMTTVCASTMFSYIN 87
Query: 91 LHGKYPPGLFSNVCREGDRGLACPLLPDPSDPSSTPLSKRPSLAIIIGSGLVLL 145
LHGKYPPGLFS++CREGD+GLACP LP PS P+STPLSK S AII+ SGLVLL
Sbjct: 88 LHGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKCRSPAIIVASGLVLL 141
BLAST of Lag0038221 vs. ExPASy Swiss-Prot
Match:
Q9FKT1 (GPI-anchored protein LLG1 OS=Arabidopsis thaliana OX=3702 GN=LLG1 PE=1 SV=1)
HSP 1 Score: 139.4 bits (350), Expect = 3.2e-32
Identity = 62/117 (52.99%), Postives = 84/117 (71.79%), Query Frame = 0
Query: 33 CPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYINLH 92
CPV+FEF+NYTIITSKCKGP Y PK CC A +F+CPY D +ND++++CA+TMFSYINL+
Sbjct: 49 CPVNFEFMNYTIITSKCKGPKYPPKECCGAFKDFACPYTDQLNDLSSDCATTMFSYINLY 108
Query: 93 GKYPPGLFSNVCREGDRGLACP----LLPDPSDPSSTPLSKRPSLAIIIGSGLVLLL 146
GKYPPGLF+N C+EG GL CP L P+ S + + L + + + L++ +
Sbjct: 109 GKYPPGLFANQCKEGKEGLECPAGSQLPPETSAEVNAATTSSSRLWLTVSAALLVFV 165
BLAST of Lag0038221 vs. ExPASy Swiss-Prot
Match:
Q9M0I0 (GPI-anchored protein LLG3 OS=Arabidopsis thaliana OX=3702 GN=LLG3 PE=2 SV=1)
HSP 1 Score: 129.4 bits (324), Expect = 3.4e-29
Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = 0
Query: 20 PSATAAAGRCASACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTT 79
PS + A + + C F NYTIITSKCKGP Y K+CCSA +F+CP+A+ +ND T
Sbjct: 35 PSTSRALLQAKATCKEDFAAKNYTIITSKCKGPNYPAKVCCSAFKDFACPFAEVLNDEKT 94
Query: 80 NCASTMFSYINLHGKYPPGLFSNVCREGDRGLAC-PLLPDPSDPSSTPLSKRPSLAIII 138
+CASTMFSYINL+G+YPPG+F+N+C+EG GL C + P S +S PL L I +
Sbjct: 95 DCASTMFSYINLYGRYPPGIFANMCKEGKEGLDCTDVTPTSSSHASIPLVSTHVLLITV 153
BLAST of Lag0038221 vs. ExPASy Swiss-Prot
Match:
Q6NLF4 (GPI-anchored protein LLG2 OS=Arabidopsis thaliana OX=3702 GN=LLG2 PE=1 SV=1)
HSP 1 Score: 120.6 bits (301), Expect = 1.6e-26
Identity = 56/120 (46.67%), Postives = 81/120 (67.50%), Query Frame = 0
Query: 31 SACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYIN 90
+ C F NYTIITS+CKGP Y +CCSA +F+CP+A+ +ND +CASTMFSYIN
Sbjct: 42 TTCKEDFANKNYTIITSRCKGPNYPANVCCSAFKDFACPFAEVLNDEKNDCASTMFSYIN 101
Query: 91 LHGKYPPGLFSNVCREGDRGLACPLLPDPSDPSSTPLSKRPSLA--IIIGSGLVLLLLYL 149
L+G+YPPG+F+N+C+EG GL C + + +S + + + A ++ + LVL LL+L
Sbjct: 102 LYGRYPPGIFANMCKEGKEGLDCTDVTQSASATSDSIPRASTTASLAVLSTFLVLCLLFL 161
BLAST of Lag0038221 vs. ExPASy Swiss-Prot
Match:
B3GS44 (GPI-anchored protein LORELEI OS=Arabidopsis thaliana OX=3702 GN=LRE PE=1 SV=1)
HSP 1 Score: 117.1 bits (292), Expect = 1.7e-25
Identity = 59/148 (39.86%), Postives = 88/148 (59.46%), Query Frame = 0
Query: 8 IGKKKEVTGGDRPSATAAAGR----CASACPVSFEFLNYTIITSKCKGPLYSPKLCCSAL 67
+ ++ G S T+ +GR C V+FE+++Y ++T +CKGP + K CCSA
Sbjct: 17 LSSSSSISDGVFESQTSVSGRNLRHAKKKCEVNFEYMDYKVLTKRCKGPAFPAKECCSAF 76
Query: 68 TEFSCPYADAVNDMTTNCASTMFSYINLHGKYPPGLFSNVCREGDRGLACPLLPDPSD-- 127
EF+CPY +NDM ++CA TMFSY+N++G YP GLF+N CRE GL CPL P S
Sbjct: 77 KEFACPYVSQINDMNSDCAQTMFSYMNIYGNYPTGLFANECRERKDGLVCPLPPLYSHNL 136
Query: 128 PSSTPLSKRPSLAIIIGSGLVLLLLYLL 150
+ST S ++++I + + L +L
Sbjct: 137 NASTADSTPRFISLLISAATAVFALLVL 164
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_023525702.1 | 5.1e-51 | 86.84 | GPI-anchored protein LLG1-like isoform X4 [Cucurbita pepo subsp. pepo] | [more] |
| XP_023525699.1 | 1.5e-50 | 86.73 | GPI-anchored protein LLG1-like isoform X1 [Cucurbita pepo subsp. pepo] | [more] |
| XP_023525701.1 | 1.5e-50 | 86.73 | GPI-anchored protein LLG1-like isoform X3 [Cucurbita pepo subsp. pepo] | [more] |
| XP_023525700.1 | 1.5e-50 | 86.73 | GPI-anchored protein LLG1-like isoform X2 [Cucurbita pepo subsp. pepo] | [more] |
| KAG7037291.1 | 1.4e-48 | 84.21 | GPI-anchored protein LLG1 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q9FKT1 | 3.2e-32 | 52.99 | GPI-anchored protein LLG1 OS=Arabidopsis thaliana OX=3702 GN=LLG1 PE=1 SV=1 | [more] |
| Q9M0I0 | 3.4e-29 | 51.26 | GPI-anchored protein LLG3 OS=Arabidopsis thaliana OX=3702 GN=LLG3 PE=2 SV=1 | [more] |
| Q6NLF4 | 1.6e-26 | 46.67 | GPI-anchored protein LLG2 OS=Arabidopsis thaliana OX=3702 GN=LLG2 PE=1 SV=1 | [more] |
| B3GS44 | 1.7e-25 | 39.86 | GPI-anchored protein LORELEI OS=Arabidopsis thaliana OX=3702 GN=LRE PE=1 SV=1 | [more] |
