Lag0038219 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038219
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	GPI-anchored protein LLG1
Location	chr2: 13950476 .. 13952616 (+)
RNA-Seq Expression	Lag0038219
Synteny	Lag0038219

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTCCGATCGATCCTTCTGCAGCTTCTCAATGCTTCTTCTCTTCTTCCTCTCACTGCTTTTCACTACTTCTTCTTCCACTTCCATTTCAGGTACCTCAGATTTACAATATCTCCGCGACATTCTCAAATTTCGCTCTCTTGCTTCTTCTCTATTTATGTCATTAACTCTGAGATTGTTTTTTTGCAGCTGATGTCTTTGAATCGAAGGTTTTAATCGGTCGCAGCCTCCTACAGGCTAAAAAAGGTTCTGCCCCCTTTCTTCGACATCTTTTCTTTTTGCTGAGTTCGTAATTTAAGTTAATTGTAGTTTCGTTTTTTTTAGGTTTTGAGAGCTCTGTTTTGTTTGTATAAGATCTTGCCGATCTGTGCTTCTTCTTTCTTGAGCTTGTGTGGAATTTGGAGTTACTCGATGTGGCTTTTACTGGTTTGGATTGGATATTTGATTCTCTCGCTTTCAACTCGTGTTCTTCTAGGATTTCTCTTTTGCCAAGATCACCGTGAAAGAAGGAAATTCAGCAGAAATAATAACTTAATTTTATCGGGTTGAATGATTTATTTGTTTAATTTTCGTATTGGGGTTGGGTCGGTCCATCCGTGATTTACGCCATGGTTTAATTACATTAAAAGATAAAAAAAGTAAGCGGTGTAAAGTTGAAATAAAATTGTGTGTATTTCTTTCTTTTAGATTAATTGATGTTCGTTCTGTCTTAATACTCTCGGGTTGTTCATCATTTGGCCTTGCTTTAAGGGATTTTCGTAAGCCAGCTCAAGATGAAAATGTCTAAATTTGGTCTCTCGAAACTTTTTAATACGTAATTAACCTTACAGTTAATTGAAAGAGCTGGGACTTATGGCAAGCGTATTTATGACAATGAATTTTCAGTAGAGTTAATTAAATCTTGTAGAAGCTTTAACTAAACACTGGAGTTATAACTTGTGTTAGAAGCTAATTTAAGGCCAATAAAATATTTTGTTGCATTCATTTGGTTACCTAAACTGATTCAGGAATTATTTAAATGTTTGATTCATATATTTTTGCATTTTTATATATATTCGAAGATAAAAATGTAGCATCTTAATAAACAAAAATCATATCCTATGGTCTCTGTCGTCTATACCTCATGCTGGCCTTGTTTGTATGGTTTTTGACTTTTAATCTTCTCTTGTATTAGTGATCTGTTACATAGCATAGGTTTTATAGGAAAATTATTTTGTTAACACATTCTTAGATGTTTGAATAATTTGTTTCTTTCTCTTTTCTTTTCTTCCTAAGAGATCTTCAAATCATGTGCATTTAGAAAATGAATTACGAAGTATATATGGAGTTATTATTTGATTAGAGATCTGGCACTAGAGGCATTACTATCTGCCACTTTTGCCTTGTTGATTTATTTTCTTTGTCCATAGATTGAACATATGTTAATTGATAAGTTTTTAGATATCACATTGTTTACTTGAGAGGATTGGACAGTGTTTGGTGCATCTTCTGTCTATGGTAGAGAAAAAGATCTTGGTGTTGTTTTGAAATGGCCAGTATTTGATGCATACTATGTCTTGTGTGGAAAATCATTAGATTGCTTAACCCCCACCTCTACTTATTAGTTATCATAATCATATTACTTGCCACTGTTAACCTCTCCAAGTTCTTATTAGAAGTTCGAAAACTTTGTAGAGATATTATGGCTTACATTATCTGTGTTTTACCAGAGATCTGTACTTTTTAAAGCTATGTTAAAACAAATTTGATCTAATCATGTAATGTTGCACAATTTATGCAGCTTGTCCAGTTAACTTCGAATTCTTGAACTACACTATCATCACAAGCAAGTGCAAGGGGCCTCATTATCCTCCCGATCTCTGTTGTTCAGCTTTCACAGAATTCGCTTGCCCTTACGCCGATGATATCAACGATTTAACAAATGATTGCGCTTCAACCATGTTCAGTTACATTAATCTGTATGGAAAATACCCTCCTGGTCTCTTCTCTAGCGAGTGCAAGGGTGATAAGGAAGGTCTAGCATGCCCTGTACCCCCGCCCTCTGCTTCAGCCGATATAAGTTGGGGTTCAATAACACGTTTCCCTTCTCGTTCGCTGATCCTCTCGGCTGGATTCGTACTTCTATCATGGCTATTATAA

mRNA sequence

ATGGTCTCCGATCGATCCTTCTGCAGCTTCTCAATGCTTCTTCTCTTCTTCCTCTCACTGCTTTTCACTACTTCTTCTTCCACTTCCATTTCAGCTGATGTCTTTGAATCGAAGGTTTTAATCGGTCGCAGCCTCCTACAGGCTAAAAAAGCTTGTCCAGTTAACTTCGAATTCTTGAACTACACTATCATCACAAGCAAGTGCAAGGGGCCTCATTATCCTCCCGATCTCTGTTGTTCAGCTTTCACAGAATTCGCTTGCCCTTACGCCGATGATATCAACGATTTAACAAATGATTGCGCTTCAACCATGTTCAGTTACATTAATCTGTATGGAAAATACCCTCCTGGTCTCTTCTCTAGCGAGTGCAAGGGTGATAAGGAAGGTCTAGCATGCCCTGTACCCCCGCCCTCTGCTTCAGCCGATATAAGTTGGGGTTCAATAACACGTTTCCCTTCTCGTTCGCTGATCCTCTCGGCTGGATTCGTACTTCTATCATGGCTATTATAA

Coding sequence (CDS)

ATGGTCTCCGATCGATCCTTCTGCAGCTTCTCAATGCTTCTTCTCTTCTTCCTCTCACTGCTTTTCACTACTTCTTCTTCCACTTCCATTTCAGCTGATGTCTTTGAATCGAAGGTTTTAATCGGTCGCAGCCTCCTACAGGCTAAAAAAGCTTGTCCAGTTAACTTCGAATTCTTGAACTACACTATCATCACAAGCAAGTGCAAGGGGCCTCATTATCCTCCCGATCTCTGTTGTTCAGCTTTCACAGAATTCGCTTGCCCTTACGCCGATGATATCAACGATTTAACAAATGATTGCGCTTCAACCATGTTCAGTTACATTAATCTGTATGGAAAATACCCTCCTGGTCTCTTCTCTAGCGAGTGCAAGGGTGATAAGGAAGGTCTAGCATGCCCTGTACCCCCGCCCTCTGCTTCAGCCGATATAAGTTGGGGTTCAATAACACGTTTCCCTTCTCGTTCGCTGATCCTCTCGGCTGGATTCGTACTTCTATCATGGCTATTATAA

Protein sequence

MVSDRSFCSFSMLLLFFLSLLFTTSSSTSISADVFESKVLIGRSLLQAKKACPVNFEFLNYTIITSKCKGPHYPPDLCCSAFTEFACPYADDINDLTNDCASTMFSYINLYGKYPPGLFSSECKGDKEGLACPVPPPSASADISWGSITRFPSRSLILSAGFVLLSWLL

Homology

[Close]

BLAST of Lag0038219 vs. NCBI nr
Match: KAG6592129.1 (GPI-anchored protein LLG1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 146/169 (86.39%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 1   MVSDRSFCSFSMLLLFFLSLLFTTSSSTSISADVFESKVLIGRSLLQAKKACPVNFEFLN 60
           MVSDRSFC+FSMLLLFFLSLLF+TSSSTSIS DVFESKVLIGRSLLQA+KACPVNFEFLN
Sbjct: 1   MVSDRSFCNFSMLLLFFLSLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFLN 60

Query: 61  YTIITSKCKGPHYPPDLCCSAFTEFACPYADDINDLTNDCASTMFSYINLYGKYPPGLFS 120
           YTIITSKCKGP YPP+ CC A TEFACPYA D+NDLTNDCASTMFSYINLYGKYPPGLFS
Sbjct: 61  YTIITSKCKGPRYPPEQCCPALTEFACPYAKDLNDLTNDCASTMFSYINLYGKYPPGLFS 120

Query: 121 SECKGDKEGLACPVPPPSASADISWGSITRFPSRSLILSAGFVLLSWLL 170
           SECKG K+GL CP  PPSASAD++WGSI R PSRSLILS GF+LL WLL
Sbjct: 121 SECKGGKQGLECPALPPSASADLNWGSIARLPSRSLILSTGFLLLLWLL 169

[Close]

BLAST of Lag0038219 vs. NCBI nr
Match: XP_022936417.1 (GPI-anchored protein LLG1 [Cucurbita moschata])

HSP 1 Score: 298.5 bits (763), Expect = 3.6e-77
Identity = 145/169 (85.80%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 1   MVSDRSFCSFSMLLLFFLSLLFTTSSSTSISADVFESKVLIGRSLLQAKKACPVNFEFLN 60
           MVSDRSFC+FSMLLLFFLSLLF+TSSSTSIS DVFESKVLIGRSLLQA+KACPVNFEFLN
Sbjct: 1   MVSDRSFCNFSMLLLFFLSLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFLN 60

Query: 61  YTIITSKCKGPHYPPDLCCSAFTEFACPYADDINDLTNDCASTMFSYINLYGKYPPGLFS 120
           YTIITSKCKGP YPP+ CC A TEFACPYA D+NDLTNDCASTMFSYINLYGKYPPGLFS
Sbjct: 61  YTIITSKCKGPRYPPEQCCPALTEFACPYAKDLNDLTNDCASTMFSYINLYGKYPPGLFS 120

Query: 121 SECKGDKEGLACPVPPPSASADISWGSITRFPSRSLILSAGFVLLSWLL 170
           SECKG K+GL CP  PPS SAD++WGSI R PSRSLILS GF+LL WLL
Sbjct: 121 SECKGGKQGLECPALPPSTSADLNWGSIARLPSRSLILSTGFLLLLWLL 169

[Close]

BLAST of Lag0038219 vs. NCBI nr
Match: KAG7025004.1 (GPI-anchored protein LLG1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.1 bits (762), Expect = 4.7e-77
Identity = 145/169 (85.80%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 1   MVSDRSFCSFSMLLLFFLSLLFTTSSSTSISADVFESKVLIGRSLLQAKKACPVNFEFLN 60
           MVSDRSFC+FSMLLLFFLSLLF+TSSSTSIS DVFESKVLIGRSLLQA+KACPVNFEFLN
Sbjct: 1   MVSDRSFCNFSMLLLFFLSLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFLN 60

Query: 61  YTIITSKCKGPHYPPDLCCSAFTEFACPYADDINDLTNDCASTMFSYINLYGKYPPGLFS 120
           YTIITSKCKGP YPP+ CC A TEFACPYA D+NDLTNDCASTMFSYINLYGKYPPGLFS
Sbjct: 61  YTIITSKCKGPRYPPEQCCPALTEFACPYAKDLNDLTNDCASTMFSYINLYGKYPPGLFS 120

Query: 121 SECKGDKEGLACPVPPPSASADISWGSITRFPSRSLILSAGFVLLSWLL 170
           SECKG K+GL CP  PPSASAD++WGSI   PSRSLILS GF+LL WLL
Sbjct: 121 SECKGGKQGLECPALPPSASADLNWGSIAHLPSRSLILSTGFLLLLWLL 169

[Close]

BLAST of Lag0038219 vs. NCBI nr
Match: XP_023536509.1 (GPI-anchored protein LLG1-like [Cucurbita pepo subsp. pepo] >XP_023536510.1 GPI-anchored protein LLG1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.4 bits (760), Expect = 8.0e-77
Identity = 143/168 (85.12%), Postives = 153/168 (91.07%), Query Frame = 0


Query: 1   MVSDRSFCSFSMLLLFFLSLLFTTSSSTSISADVFESKVLIGRSLLQAKKACPVNFEFLN 60
           MVSDRSFC+FSML+LFFLSLLF+TSSSTSIS DVFESKVLIGRSLLQA+KACPVNFEFLN
Sbjct: 52  MVSDRSFCNFSMLILFFLSLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFLN 111

Query: 61  YTIITSKCKGPHYPPDLCCSAFTEFACPYADDINDLTNDCASTMFSYINLYGKYPPGLFS 120
           YTIITSKCKGP YPP+ CC A TEFACPYA D+NDLTNDCASTMFSYINLYGKYPPGLFS
Sbjct: 112 YTIITSKCKGPRYPPEQCCPALTEFACPYAKDLNDLTNDCASTMFSYINLYGKYPPGLFS 171

Query: 121 SECKGDKEGLACPVPPPSASADISWGSITRFPSRSLILSAGFVLLSWL 169
           SECKG K+GL CP  PPS SAD++WGSI R PSRSLILS GF+LL WL
Sbjct: 172 SECKGGKQGLECPALPPSTSADLNWGSIARLPSRSLILSTGFILLLWL 219

[Close]

BLAST of Lag0038219 vs. NCBI nr
Match: XP_022976292.1 (GPI-anchored protein LLG1-like [Cucurbita maxima])

HSP 1 Score: 294.7 bits (753), Expect = 5.2e-76
Identity = 143/169 (84.62%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 1   MVSDRSFCSFSMLLLFFLSLLFTTSSSTSISADVFESKVLIGRSLLQAKKACPVNFEFLN 60
           MVS+RSFC+FSMLLLFF+SLLF+TSSSTSIS DVFESKVLIGRSLLQA+KACPVNFEFLN
Sbjct: 1   MVSNRSFCNFSMLLLFFISLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFLN 60

Query: 61  YTIITSKCKGPHYPPDLCCSAFTEFACPYADDINDLTNDCASTMFSYINLYGKYPPGLFS 120
           YTIITSKCKGP YPP  CC A TEFACPYA D+NDLTNDCASTMFSYINLYGKYPPGLFS
Sbjct: 61  YTIITSKCKGPRYPPKQCCPALTEFACPYAKDLNDLTNDCASTMFSYINLYGKYPPGLFS 120

Query: 121 SECKGDKEGLACPVPPPSASADISWGSITRFPSRSLILSAGFVLLSWLL 170
           SECKG K+GL CP  PPS SAD++WGSI R PSRSLILS GF+LL WLL
Sbjct: 121 SECKGGKQGLECPALPPSTSADLNWGSIARLPSRSLILSTGFLLLLWLL 169

[Close]

BLAST of Lag0038219 vs. ExPASy Swiss-Prot
Match: Q9FKT1 (GPI-anchored protein LLG1 OS=Arabidopsis thaliana OX=3702 GN=LLG1 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.8e-45
Identity = 91/140 (65.00%), Postives = 109/140 (77.86%), Query Frame = 0


Query: 11  SMLLLFF--LSLLFTTSSSTSISADVFESKVLI-GRSLLQAKKACPVNFEFLNYTIITSK 70
           S  L FF  LS+L + SSS+ IS  VFES+ L+ GR+LLQ KK CPVNFEF+NYTIITSK
Sbjct: 5   SRALFFFLLLSVLSSFSSSSFISDGVFESQSLVLGRNLLQTKKTCPVNFEFMNYTIITSK 64

Query: 71  CKGPHYPPDLCCSAFTEFACPYADDINDLTNDCASTMFSYINLYGKYPPGLFSSECKGDK 130
           CKGP YPP  CC AF +FACPY D +NDL++DCA+TMFSYINLYGKYPPGLF+++CK  K
Sbjct: 65  CKGPKYPPKECCGAFKDFACPYTDQLNDLSSDCATTMFSYINLYGKYPPGLFANQCKEGK 124

Query: 131 EGLACPVP---PPSASADIS 145
           EGL CP     PP  SA+++
Sbjct: 125 EGLECPAGSQLPPETSAEVN 144

[Close]

BLAST of Lag0038219 vs. ExPASy Swiss-Prot
Match: B3GS44 (GPI-anchored protein LORELEI OS=Arabidopsis thaliana OX=3702 GN=LRE PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.5e-38
Identity = 71/126 (56.35%), Postives = 95/126 (75.40%), Query Frame = 0


Query: 12  MLLLFFLSLLFTTSSSTSISADVFESKVLI-GRSLLQAKKACPVNFEFLNYTIITSKCKG 71
           +L  F ++LL + SSS+SIS  VFES+  + GR+L  AKK C VNFE+++Y ++T +CKG
Sbjct: 5   LLFFFLMALLVSLSSSSSISDGVFESQTSVSGRNLRHAKKKCEVNFEYMDYKVLTKRCKG 64

Query: 72  PHYPPDLCCSAFTEFACPYADDINDLTNDCASTMFSYINLYGKYPPGLFSSECKGDKEGL 131
           P +P   CCSAF EFACPY   IND+ +DCA TMFSY+N+YG YP GLF++EC+  K+GL
Sbjct: 65  PAFPAKECCSAFKEFACPYVSQINDMNSDCAQTMFSYMNIYGNYPTGLFANECRERKDGL 124

Query: 132 ACPVPP 137
            CP+PP
Sbjct: 125 VCPLPP 130

[Close]

BLAST of Lag0038219 vs. ExPASy Swiss-Prot
Match: Q6NLF4 (GPI-anchored protein LLG2 OS=Arabidopsis thaliana OX=3702 GN=LLG2 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.0e-34
Identity = 72/135 (53.33%), Postives = 92/135 (68.15%), Query Frame = 0


Query: 7   FCSFSMLLLFFLSLLFTTSSSTSISADVFESKVLIGRSLLQAKKACPVNFEFLNYTIITS 66
           +C  S+L +F L       S  S+S D F+      R+LLQ +  C  +F   NYTIITS
Sbjct: 6   YCLLSLLPIFLL-------SGFSLSYDEFDGHAATSRALLQTRTTCKEDFANKNYTIITS 65

Query: 67  KCKGPHYPPDLCCSAFTEFACPYADDINDLTNDCASTMFSYINLYGKYPPGLFSSECKGD 126
           +CKGP+YP ++CCSAF +FACP+A+ +ND  NDCASTMFSYINLYG+YPPG+F++ CK  
Sbjct: 66  RCKGPNYPANVCCSAFKDFACPFAEVLNDEKNDCASTMFSYINLYGRYPPGIFANMCKEG 125

Query: 127 KEGLACPVPPPSASA 142
           KEGL C     SASA
Sbjct: 126 KEGLDCTDVTQSASA 133

[Close]

BLAST of Lag0038219 vs. ExPASy Swiss-Prot
Match: Q9M0I0 (GPI-anchored protein LLG3 OS=Arabidopsis thaliana OX=3702 GN=LLG3 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.0e-34
Identity = 75/137 (54.74%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 8   CSFSMLLLFFLSLLFTTSSSTSISADVFESKVLIGRSLLQAKKACPVNFEFLNYTIITSK 67
           C  S+L +  LS     + S  IS D FES     R+LLQAK  C  +F   NYTIITSK
Sbjct: 7   CLVSLLSILLLS---GFAFSHHISLDEFESHPSTSRALLQAKATCKEDFAAKNYTIITSK 66

Query: 68  CKGPHYPPDLCCSAFTEFACPYADDINDLTNDCASTMFSYINLYGKYPPGLFSSECKGDK 127
           CKGP+YP  +CCSAF +FACP+A+ +ND   DCASTMFSYINLYG+YPPG+F++ CK  K
Sbjct: 67  CKGPNYPAKVCCSAFKDFACPFAEVLNDEKTDCASTMFSYINLYGRYPPGIFANMCKEGK 126

Query: 128 EGLACPVPPPSASADIS 145
           EGL C    P++S+  S
Sbjct: 127 EGLDCTDVTPTSSSHAS 140

The following BLAST results are available for this feature:

BLAST of Lag0038219 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592129.1	1.2e-77	86.39	GPI-anchored protein LLG1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022936417.1	3.6e-77	85.80	GPI-anchored protein LLG1 [Cucurbita moschata]	[more]
KAG7025004.1	4.7e-77	85.80	GPI-anchored protein LLG1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023536509.1	8.0e-77	85.12	GPI-anchored protein LLG1-like [Cucurbita pepo subsp. pepo] >XP_023536510.1 GPI-...	[more]
XP_022976292.1	5.2e-76	84.62	GPI-anchored protein LLG1-like [Cucurbita maxima]	[more]

BLAST of Lag0038219 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKT1	3.8e-45	65.00	GPI-anchored protein LLG1 OS=Arabidopsis thaliana OX=3702 GN=LLG1 PE=1 SV=1	[more]
B3GS44	4.5e-38	56.35	GPI-anchored protein LORELEI OS=Arabidopsis thaliana OX=3702 GN=LRE PE=1 SV=1	[more]
Q6NLF4	3.0e-34	53.33	GPI-anchored protein LLG2 OS=Arabidopsis thaliana OX=3702 GN=LLG2 PE=1 SV=1	[more]
Q9M0I0	3.0e-34	54.74	GPI-anchored protein LLG3 OS=Arabidopsis thaliana OX=3702 GN=LLG3 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31533:SF22	LORELEI-LIKE-GPI-ANCHORED PROTEIN	coord: 3..165
IPR039307	GPI-anchored protein LORELEI-like	PANTHER	PTHR31533	GPI-ANCHORED PROTEIN LLG1-RELATED-RELATED	coord: 3..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038219.1	Lag0038219.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane