Lag0037794 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037794
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ABC transporter domain-containing protein
Location	chr2: 9244451 .. 9244894 (-)
RNA-Seq Expression	Lag0037794
Synteny	Lag0037794

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCAAACTTTCGTTGCCGGCGAACAAACTTCCATCGCTGGCGTTTCAACTCCGACATCGACGATGGAAGATTTTTTTTTTGTTTTAAATTTACCTTCGCCTTCGCCGCTCGCCTCCTCCTCCCCAAAAATCCCAAATCCCGACCACCGTCGACTCCCTGCTCGCCGACCTCTGCCTTTCCCACTTCGCCAACACCCGTCTCATCTCCGGCCTCTCCGGAGCGTCTCCATCGGCCTCAGCCTCCTCCACGACCCCGTCGTTCTGCTCCTCGACGAACCCACCTCCGGCCTCGACAGCGCCTCGGCCTTCACCCACCCTTTCATCTTCTTCAACCTAAAACCCATTTCTTCCCCAAACCCTTTCGTCTTCCAGATCTACGCAAAAAAAAAAAAAAAAACAGCAAACTCAAATGGCGCCGGAAAGGAGAAGAGAAGAAGATGA

mRNA sequence

ATGTTTCAAACTTTCGTTGCCGGCGAACAAACTTCCATCGCTGGCGTTTCAACTCCGACATCGACGATGGAAGATTTTTTTTTTGTTTTAAATTTACCTTCGCCTTCGCCGCTCGCCTCCTCCTCCCCAAAAATCCCAAATCCCGACCACCGTCGACTCCCTGCTCGCCGACCTCTGCCTTTCCCACTTCGCCAACACCCGTCTCATCTCCGGCCTCTCCGGAGCGTCTCCATCGGCCTCAGCCTCCTCCACGACCCCGTCGTTCTGCTCCTCGACGAACCCACCTCCGGCCTCGACAGCGCCTCGGCCTTCACCCACCCTTTCATCTTCTTCAACCTAAAACCCATTTCTTCCCCAAACCCTTTCGTCTTCCAGATCTACGCAAAAAAAAAAAAAAAAACAGCAAACTCAAATGGCGCCGGAAAGGAGAAGAGAAGAAGATGA

Coding sequence (CDS)

ATGTTTCAAACTTTCGTTGCCGGCGAACAAACTTCCATCGCTGGCGTTTCAACTCCGACATCGACGATGGAAGATTTTTTTTTTGTTTTAAATTTACCTTCGCCTTCGCCGCTCGCCTCCTCCTCCCCAAAAATCCCAAATCCCGACCACCGTCGACTCCCTGCTCGCCGACCTCTGCCTTTCCCACTTCGCCAACACCCGTCTCATCTCCGGCCTCTCCGGAGCGTCTCCATCGGCCTCAGCCTCCTCCACGACCCCGTCGTTCTGCTCCTCGACGAACCCACCTCCGGCCTCGACAGCGCCTCGGCCTTCACCCACCCTTTCATCTTCTTCAACCTAAAACCCATTTCTTCCCCAAACCCTTTCGTCTTCCAGATCTACGCAAAAAAAAAAAAAAAAACAGCAAACTCAAATGGCGCCGGAAAGGAGAAGAGAAGAAGATGA

Protein sequence

MFQTFVAGEQTSIAGVSTPTSTMEDFFFVLNLPSPSPLASSSPKIPNPDHRRLPARRPLPFPLRQHPSHLRPLRSVSIGLSLLHDPVVLLLDEPTSGLDSASAFTHPFIFFNLKPISSPNPFVFQIYAKKKKKTANSNGAGKEKRRR

Homology

[Close]

BLAST of Lag0037794 vs. NCBI nr
Match: EOY23363.1 (ABC-2 type transporter family protein [Theobroma cacao])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 43/84 (51.19%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 21  STMEDFFFVLNLPSPSPLASSSPKIPNPDHRRLPARRPLPFPLRQHPSHLRPLRSVSIGL 80
           ST+ D       P+   L  +S  I     R+L A  P      QH + L  LR VSIGL
Sbjct: 78  STLLDILAARTSPTNGALLLNSTPINPSSFRKLSAYVP------QHDACLPLLRRVSIGL 137

Query: 81  SLLHDPVVLLLDEPTSGLDSASAF 105
           SLLHDP VLLLDEPTSGLDS SAF
Sbjct: 138 SLLHDPAVLLLDEPTSGLDSTSAF 155

[Close]

BLAST of Lag0037794 vs. NCBI nr
Match: XP_022141332.1 (ABC transporter G family member 8 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-05
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 74  RSVSIGLSLLHDPVVLLLDEPTSGLDSASAF 105
           R VSIGLSLLHDP VLLLDEPTSGLDSASAF
Sbjct: 179 RRVSIGLSLLHDPAVLLLDEPTSGLDSASAF 209

[Close]

BLAST of Lag0037794 vs. NCBI nr
Match: KAG9445506.1 (hypothetical protein H6P81_011634 [Aristolochia fimbriata])

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-05
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 74  RSVSIGLSLLHDPVVLLLDEPTSGLDSASAF 105
           R VSIGLSLLHDP VLLLDEPTSGLDSASAF
Sbjct: 182 RRVSIGLSLLHDPAVLLLDEPTSGLDSASAF 212

[Close]

BLAST of Lag0037794 vs. NCBI nr
Match: XP_023541336.1 (ABC transporter G family member 8-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023541337.1 ABC transporter G family member 8-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-05
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 74  RSVSIGLSLLHDPVVLLLDEPTSGLDSASAF 105
           R VSIGLSLLHDP VLLLDEPTSGLDSASAF
Sbjct: 172 RRVSIGLSLLHDPAVLLLDEPTSGLDSASAF 202

[Close]

BLAST of Lag0037794 vs. NCBI nr
Match: KAG6576688.1 (ABC transporter G family member 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-05
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 74  RSVSIGLSLLHDPVVLLLDEPTSGLDSASAF 105
           R VSIGLSLLHDP +LLLDEPTSGLDSASAF
Sbjct: 176 RRVSIGLSLLHDPAILLLDEPTSGLDSASAF 206

[Close]

BLAST of Lag0037794 vs. ExPASy Swiss-Prot
Match: Q9SW08 (ABC transporter G family member 4 OS=Arabidopsis thaliana OX=3702 GN=ABCG4 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.6e-07
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 74  RSVSIGLSLLHDPVVLLLDEPTSGLDSASAF 105
           R VSIGLSLLHDP VLLLDEPTSGLDS SAF
Sbjct: 153 RRVSIGLSLLHDPEVLLLDEPTSGLDSKSAF 183

[Close]

BLAST of Lag0037794 vs. ExPASy Swiss-Prot
Match: Q9FLX5 (ABC transporter G family member 8 OS=Arabidopsis thaliana OX=3702 GN=ABCG8 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.0e-06
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 74  RSVSIGLSLLHDPVVLLLDEPTSGLDSASAF 105
           R VSIGLSLLHDP  LLLDEPTSGLDS SAF
Sbjct: 166 RRVSIGLSLLHDPCFLLLDEPTSGLDSKSAF 196

[Close]

BLAST of Lag0037794 vs. ExPASy Swiss-Prot
Match: Q9M2V7 (ABC transporter G family member 16 OS=Arabidopsis thaliana OX=3702 GN=ABCG16 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 3.0e-06
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 74  RSVSIGLSLLHDPVVLLLDEPTSGLDSASAF 105
           R VSIG+ ++HDP+VL LDEPTSGLDS SAF
Sbjct: 238 RRVSIGIDIIHDPIVLFLDEPTSGLDSTSAF 268

[Close]

BLAST of Lag0037794 vs. ExPASy Swiss-Prot
Match: Q9M2V6 (ABC transporter G family member 17 OS=Arabidopsis thaliana OX=3702 GN=ABCG17 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.7e-06
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 74  RSVSIGLSLLHDPVVLLLDEPTSGLDSASAF 105
           R VSIG  ++HDP+VL LDEPTSGLDS SAF
Sbjct: 182 RRVSIGTDIIHDPIVLFLDEPTSGLDSTSAF 212

[Close]

BLAST of Lag0037794 vs. ExPASy Swiss-Prot
Match: Q9M3D6 (ABC transporter G family member 19 OS=Arabidopsis thaliana OX=3702 GN=ABCG19 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.7e-06
Identity = 22/31 (70.97%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 74  RSVSIGLSLLHDPVVLLLDEPTSGLDSASAF 105
           R VSIG+ ++HDP+VL LDEPTSGLDS +AF
Sbjct: 231 RRVSIGIDIIHDPIVLFLDEPTSGLDSTNAF 261

The following BLAST results are available for this feature:

BLAST of Lag0037794 vs. NCBI nr


Match Name	E-value	Identity	Description
EOY23363.1	1.3e-06	51.19	ABC-2 type transporter family protein [Theobroma cacao]	[more]
XP_022141332.1	4.2e-05	93.55	ABC transporter G family member 8 [Momordica charantia]	[more]
KAG9445506.1	4.2e-05	93.55	hypothetical protein H6P81_011634 [Aristolochia fimbriata]	[more]
XP_023541336.1	4.2e-05	93.55	ABC transporter G family member 8-like isoform X1 [Cucurbita pepo subsp. pepo] >...	[more]
KAG6576688.1	5.5e-05	90.32	ABC transporter G family member 8, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0037794 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SW08	3.6e-07	90.32	ABC transporter G family member 4 OS=Arabidopsis thaliana OX=3702 GN=ABCG4 PE=3 ...	[more]
Q9FLX5	1.0e-06	87.10	ABC transporter G family member 8 OS=Arabidopsis thaliana OX=3702 GN=ABCG8 PE=2 ...	[more]
Q9M2V7	3.0e-06	74.19	ABC transporter G family member 16 OS=Arabidopsis thaliana OX=3702 GN=ABCG16 PE=...	[more]
Q9M2V6	6.7e-06	74.19	ABC transporter G family member 17 OS=Arabidopsis thaliana OX=3702 GN=ABCG17 PE=...	[more]
Q9M3D6	6.7e-06	70.97	ABC transporter G family member 19 OS=Arabidopsis thaliana OX=3702 GN=ABCG19 PE=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 73..105 e-value: 6.3E-6 score: 27.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 76..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037794.1	Lag0037794.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0000166	nucleotide binding