Lag0035700 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035700
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr3: 27577885 .. 27578388 (-)
RNA-Seq ExpressionLag0035700
SyntenyLag0035700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCAACGAAAGCACCCGCGAAGGTGACAACATCAAGTGACTCTTACAGAGGTCCTGTCACTCGTAGTCGTTCCCAAGGAATTGAGATTAAGGAGGATCACACTCCTCTCGCTGTTGCAAGTAGGATCTCAAAATTGATTGAAGAATCCTCTAAGGACAAGGTTGTAGTCAAAGACAACCCATTGTTCGAATCTGCCACTCCAACATCTGAACAGCCAAAGGACACCCTAAATCCTCATGTGATGTCTATCATGATGGCTCATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCATGAGATTGCCTATTTGAAGAACCAGCTGCAAAATCGAGAAACTGCTGAATTTAGCCAGACCCCTGTTGCAGGAAAAAATGATAAGGGGAAGGTTATCGTCCATGAGGACCAGCCACAATACTCAGCGTTAGTTGCCTCTCCGTCTGTCCAACAACTGTAG

mRNA sequence

ATGGCACCAACGAAAGCACCCGCGAAGGTGACAACATCAAGTGACTCTTACAGAGGTCCTGTCACTCGTAGTCGTTCCCAAGGAATTGAGATTAAGGAGGATCACACTCCTCTCGCTGTTGCAAGTAGGATCTCAAAATTGATTGAAGAATCCTCTAAGGACAAGGTTGTAGTCAAAGACAACCCATTGTTCGAATCTGCCACTCCAACATCTGAACAGCCAAAGGACACCCTAAATCCTCATGTGATGTCTATCATGATGGCTCATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCATGAGATTGCCTATTTGAAGAACCAGCTGCAAAATCGAGAAACTGCTGAATTTAGCCAGACCCCTGTTGCAGGAAAAAATGATAAGGGGAAGGTTATCGTCCATGAGGACCAGCCACAATACTCAGCGTTAGTTGCCTCTCCGTCTGTCCAACAACTGTAG

Coding sequence (CDS)

ATGGCACCAACGAAAGCACCCGCGAAGGTGACAACATCAAGTGACTCTTACAGAGGTCCTGTCACTCGTAGTCGTTCCCAAGGAATTGAGATTAAGGAGGATCACACTCCTCTCGCTGTTGCAAGTAGGATCTCAAAATTGATTGAAGAATCCTCTAAGGACAAGGTTGTAGTCAAAGACAACCCATTGTTCGAATCTGCCACTCCAACATCTGAACAGCCAAAGGACACCCTAAATCCTCATGTGATGTCTATCATGATGGCTCATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCATGAGATTGCCTATTTGAAGAACCAGCTGCAAAATCGAGAAACTGCTGAATTTAGCCAGACCCCTGTTGCAGGAAAAAATGATAAGGGGAAGGTTATCGTCCATGAGGACCAGCCACAATACTCAGCGTTAGTTGCCTCTCCGTCTGTCCAACAACTGTAG

Protein sequence

MAPTKAPAKVTTSSDSYRGPVTRSRSQGIEIKEDHTPLAVASRISKLIEESSKDKVVVKDNPLFESATPTSEQPKDTLNPHVMSIMMAHVDQDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETAEFSQTPVAGKNDKGKVIVHEDQPQYSALVASPSVQQL
Homology
[Close]
BLAST of Lag0035700 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-32
Identity = 92/168 (54.76%), Postives = 114/168 (67.86%), Query Frame = 0 

Query: 1   MAPTKAPAKVTTSSDSYRGPVTRSRSQGIEIKEDHTPLAVASRISKLIEESSKDKVVVKD 60
           MA  KA +K + +SD+Y GP+TRSRS+GI I+      A+A  I K + ES K  +V+K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  NPLFESATPTSEQPKDTLNPHVMSIMMAHVDQDERMAEMERKLNLLMKAVDERDHEIAYL 120
           NPL+      S +     +P VMS+MMA V  +  MAEMERK+NLLMK VDERDHEIA L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQLQNRETAEFSQTPVAGKNDKGKVIVHEDQP-QYSALVASPSVQQL 168
           K Q+Q RETAE SQTPV   +DKGK +V E+QP Q S  VAS SVQQL
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQL 167

[Close]
BLAST of Lag0035700 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-32
Identity = 92/168 (54.76%), Postives = 114/168 (67.86%), Query Frame = 0 

Query: 1   MAPTKAPAKVTTSSDSYRGPVTRSRSQGIEIKEDHTPLAVASRISKLIEESSKDKVVVKD 60
           MA  KA +K + +SD+Y GP+TRSRS+GI I+      A+A  I K + ES K  +V+K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  NPLFESATPTSEQPKDTLNPHVMSIMMAHVDQDERMAEMERKLNLLMKAVDERDHEIAYL 120
           NPL+      S +     +P VMS+MMA V  +  MAEMERK+NLLMK VDERDHEIA L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQLQNRETAEFSQTPVAGKNDKGKVIVHEDQP-QYSALVASPSVQQL 168
           K Q+Q RETAE SQTPV   +DKGK +V E+QP Q S  VAS SVQQL
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQL 167

[Close]
BLAST of Lag0035700 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-32
Identity = 92/168 (54.76%), Postives = 114/168 (67.86%), Query Frame = 0 

Query: 1   MAPTKAPAKVTTSSDSYRGPVTRSRSQGIEIKEDHTPLAVASRISKLIEESSKDKVVVKD 60
           MA  KA +K + +SD+Y GP+TRSRS+GI I+      A+A  I K + ES K  +V+K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  NPLFESATPTSEQPKDTLNPHVMSIMMAHVDQDERMAEMERKLNLLMKAVDERDHEIAYL 120
           NPL+      S +     +P VMS+MMA V  +  MAEMERK+NLLMK VDERDHEIA L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQLQNRETAEFSQTPVAGKNDKGKVIVHEDQP-QYSALVASPSVQQL 168
           K Q+Q RETAE SQTPV   +DKGK +V E+QP Q S  VAS SVQQL
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQL 167

[Close]
BLAST of Lag0035700 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-32
Identity = 92/168 (54.76%), Postives = 114/168 (67.86%), Query Frame = 0 

Query: 1   MAPTKAPAKVTTSSDSYRGPVTRSRSQGIEIKEDHTPLAVASRISKLIEESSKDKVVVKD 60
           MA  KA +K + +SD+Y GP+TRSRS+GI I+      A+A  I K + ES K  +V+K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  NPLFESATPTSEQPKDTLNPHVMSIMMAHVDQDERMAEMERKLNLLMKAVDERDHEIAYL 120
           NPL+      S +     +P VMS+MMA V  +  MAEMERK+NLLMK VDERDHEIA L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQLQNRETAEFSQTPVAGKNDKGKVIVHEDQP-QYSALVASPSVQQL 168
           K Q+Q RETAE SQTPV   +DKGK +V E+QP Q S  VAS SVQQL
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQL 167

[Close]
BLAST of Lag0035700 vs. NCBI nr
Match: XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-32
Identity = 92/168 (54.76%), Postives = 114/168 (67.86%), Query Frame = 0 

Query: 1   MAPTKAPAKVTTSSDSYRGPVTRSRSQGIEIKEDHTPLAVASRISKLIEESSKDKVVVKD 60
           MA  KA +K + +SD+Y GP+TRSRS+GI I+      A+A  I K + ES K  +V+K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  NPLFESATPTSEQPKDTLNPHVMSIMMAHVDQDERMAEMERKLNLLMKAVDERDHEIAYL 120
           NPL+      S +     +P VMS+MMA V  +  MAEMERK+NLLMK VDERDHEIA L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQLQNRETAEFSQTPVAGKNDKGKVIVHEDQP-QYSALVASPSVQQL 168
           K Q+Q RETAE SQTPV   +DKGK +V E+QP Q S  VAS SVQQL
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQL 167

The following BLAST results are available for this feature:
BLAST of Lag0035700 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031739134.11.6e-3254.76uncharacterized protein LOC116402863 [Cucumis sativus][more]
XP_031742032.11.6e-3254.76uncharacterized protein LOC116404025 [Cucumis sativus][more]
XP_031742199.11.6e-3254.76uncharacterized protein LOC105435721 [Cucumis sativus][more]
XP_031735972.11.6e-3254.76uncharacterized protein LOC116401693 [Cucumis sativus][more]
XP_031737053.11.6e-3254.76uncharacterized protein LOC116402138 [Cucumis sativus][more]
BLAST of Lag0035700 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 96..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035700.1Lag0035700.1mRNA