Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTAAAGTCCTTGAATGCATCCGAAATAAAGTTAGCACTTGTATTCCTAGTATCCGTAGCCATTTTAGCTCCATGGGTGACGGTGGCGGTGCCTGATTCGTCGTTAACAGATGATGACTCTATCAAAGCTTGTGTACCGTTGATTTTTGAGGCGACAATGTGTGTGGCGGATATCATCAAGTTTCCAATTTCTGCTCATCCTTCTTGTTGCAAAGCAATTTCTATGGCCAATGACTGTTCCCCCGAGTTTCTCAAACACATTTCCCCTACTGAGATGAATATTATTAAGAAGATTTGTTCTTTGTAA
mRNA sequence
ATGGCGGTAAAGTCCTTGAATGCATCCGAAATAAAGTTAGCACTTGTATTCCTAGTATCCGTAGCCATTTTAGCTCCATGGGTGACGGTGGCGGTGCCTGATTCGTCGTTAACAGATGATGACTCTATCAAAGCTTGTGTACCGTTGATTTTTGAGGCGACAATGTGTGTGGCGGATATCATCAAGTTTCCAATTTCTGCTCATCCTTCTTGTTGCAAAGCAATTTCTATGGCCAATGACTGTTCCCCCGAGTTTCTCAAACACATTTCCCCTACTGAGATGAATATTATTAAGAAGATTTGTTCTTTGTAA
Coding sequence (CDS)
ATGGCGGTAAAGTCCTTGAATGCATCCGAAATAAAGTTAGCACTTGTATTCCTAGTATCCGTAGCCATTTTAGCTCCATGGGTGACGGTGGCGGTGCCTGATTCGTCGTTAACAGATGATGACTCTATCAAAGCTTGTGTACCGTTGATTTTTGAGGCGACAATGTGTGTGGCGGATATCATCAAGTTTCCAATTTCTGCTCATCCTTCTTGTTGCAAAGCAATTTCTATGGCCAATGACTGTTCCCCCGAGTTTCTCAAACACATTTCCCCTACTGAGATGAATATTATTAAGAAGATTTGTTCTTTGTAA
Protein sequence
MAVKSLNASEIKLALVFLVSVAILAPWVTVAVPDSSLTDDDSIKACVPLIFEATMCVADIIKFPISAHPSCCKAISMANDCSPEFLKHISPTEMNIIKKICSL
Homology
BLAST of Lag0034522 vs. NCBI nr
Match:
KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])
HSP 1 Score: 112.1 bits (279), Expect = 2.9e-21
Identity = 59/108 (54.63%), Postives = 73/108 (67.59%), Query Frame = 0
Query: 1 MAVKSLNASEIKLALVFLVSVAILAPWVTV-----AVPDSSLTDDDSIKACVPLIFEATM 60
MA +SLN S +KL LVFLV +AILAP T+ A P S+ + C P I EAT+
Sbjct: 1 MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60
Query: 61 CVADIIKFPISAHPSCCKAISMANDCSPEFLKHISPTEMNIIKKICSL 104
CV D+IKFPI+ HPSCCKAIS NDC+PE + I +M++IKKICSL
Sbjct: 61 CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108
BLAST of Lag0034522 vs. NCBI nr
Match:
KAA0050072.1 (hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK10333.1 hypothetical protein E5676_scaffold367G00060 [Cucumis melo var. makuwa])
HSP 1 Score: 104.4 bits (259), Expect = 6.1e-19
Identity = 57/108 (52.78%), Postives = 71/108 (65.74%), Query Frame = 0
Query: 1 MAVKSLNASEIKLALVFLVSVAILAPWVTVAVPDSSLTDDDSIK------ACVPLIFEAT 60
MAVKSL AS IK A VF+VS+AILA VT SS T D S+ +C P IF+ T
Sbjct: 1 MAVKSLKASPIKSASVFIVSIAILAASVTAGRTVSSTTLDPSMSQNLSFFSCAPFIFDVT 60
Query: 61 MCVADIIKFPISAHPSCCKAISMANDCSPEFLKHISPTEMNIIKKICS 103
+C+ D+ KFPIS HP CCKAI NDC+P + I P +M++IKKIC+
Sbjct: 61 LCLVDVFKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKICA 108
BLAST of Lag0034522 vs. NCBI nr
Match:
TYK10344.1 (hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa])
HSP 1 Score: 102.1 bits (253), Expect = 3.0e-18
Identity = 57/109 (52.29%), Postives = 69/109 (63.30%), Query Frame = 0
Query: 2 AVKSLNASEIKLALVFLVSVAILAPWVTVAVPDSS-------LTDDDSIKACVPLIFEAT 61
A KS +AS I+LALVFLV + ILAP VT + L D S C P I EAT
Sbjct: 3 AAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEAT 62
Query: 62 MCVADIIKFPISAHPSCCKAISMANDCSPEFLKHISPTEMNIIKKICSL 104
MC+ D+IK P++ HPSCCKAIS NDC+PE +HI M++IKKIC L
Sbjct: 63 MCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHI--PGMDVIKKICGL 109
BLAST of Lag0034522 vs. NCBI nr
Match:
KAA0050064.1 (hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa])
HSP 1 Score: 101.3 bits (251), Expect = 5.2e-18
Identity = 57/109 (52.29%), Postives = 68/109 (62.39%), Query Frame = 0
Query: 2 AVKSLNASEIKLALVFLVSVAILAPWVTVAVPDSS-------LTDDDSIKACVPLIFEAT 61
A KS +AS I+LALVFLV + ILAP VT + L D S C P I EAT
Sbjct: 3 AAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEAT 62
Query: 62 MCVADIIKFPISAHPSCCKAISMANDCSPEFLKHISPTEMNIIKKICSL 104
MC+ D+IK P++ HPSCCKAIS NDC+PE HI M++IKKIC L
Sbjct: 63 MCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYHHI--PGMDVIKKICGL 109
BLAST of Lag0034522 vs. NCBI nr
Match:
TYK10334.1 (hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa])
HSP 1 Score: 96.7 bits (239), Expect = 1.3e-16
Identity = 50/98 (51.02%), Postives = 63/98 (64.29%), Query Frame = 0
Query: 11 IKLALVFLVSVAILAP-----WVTVAVPDSSLTDDDSIKACVPLIFEATMCVADIIKFPI 70
+KL LVFLV +AILAP T A P S+ + C P I EAT+CV +IKFPI
Sbjct: 1 MKLVLVFLVCIAILAPSTTMAGTTAAAPSPSVPQNFPFLKCAPFILEATLCVTGVIKFPI 60
Query: 71 SAHPSCCKAISMANDCSPEFLKHISPTEMNIIKKICSL 104
+ HPSCCKAIS DC+P+ + I ++MN+IKK CSL
Sbjct: 61 APHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0050069.1 | 2.9e-21 | 54.63 | hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034... | [more] |
KAA0050072.1 | 6.1e-19 | 52.78 | hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK1033... | [more] |
TYK10344.1 | 3.0e-18 | 52.29 | hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa] | [more] |
KAA0050064.1 | 5.2e-18 | 52.29 | hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa] | [more] |
TYK10334.1 | 1.3e-16 | 51.02 | hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |