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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGTGATGGATTTGGAGGGTCATATACCTTTGTACCAACCACTGTTTCAATCATCCTTGCTGGTCGATTTTCTGATACGACTAATCCTATTGATGTAACGTAAATTAAATCCTTTTGTGTAGTTTAACTAAATTGCTTATATGTCAATCTGAGAAATTGATATGAATGGCGAGTGCAGGACTTAATCTTACCGTGACCTTCATGCTATAAGAAATGCTCATTTGTACCTATGAATGACTAATTTTAACTAATGAAAGCTTTCTTCACTAGTTATAATATATACGATCAAAATGGAGCATCAATGCATCAAAACCGCTTATATGATTAATAACTGCATGTTTCATTTGAGGTTGTTGACATTGCTTTGCTACTCATTCAGAAGTTCAGGTAGACAATGCAGGCAATCTAGGGTGCTCTCATTGTTGCTTCAACCCTTCATATTGTGCTTGGCTTTAATGGTCTGTGGCTTAATGTTTCTAGGTTTGTCGACTATTTTCGCTCCATGTCTTTGTTAATATTTTGGGTTTCATCAAGATTATAAGTTTAATTTTGTGTAATAAGTCTTGAAAGATTTCTCGAGCTTGTATTGGTCAAGAACCTTTTTTGTCTTGCATTTTATTGGTTTTCCTTTGGACATGACCTGCAAGTTAGCATTTTGATCTAATGACTTGCCAATGTGATCATTCTTTGTACTTTTTAATTCAAGGAATGAGTTCTTACTTGCACATGGAGTGTGAATGACTTGATCAAATTACACTTTTCTTTTCCATTTTTTAGAAAATAATGTCTAAAACGATTGTTCTTTTTTTCCTTACTTGCTACTTGTTAGTAATGCATAAAATTGTATTATACTCTTGATCTTTTATGTGTTTATGTGTCTATAACTTTATTTTCTATCCTTGTTTATATGAAGATGATGCATGAAAGATGTTGCTTGATGCTGCTATAGTTATAGCTATTGTTTTAGACAGAGATCAAGAATGACTCGGGTATTTTTTTTTTTAGAAAACTTAAGCTATTGTTTTCTATCTCTGGTATAACGCCAACATGTTCCTCTCAGTTAAGCTATTGTTTTATTTTTCTAAGTGTGTTGTCATTTGCCAACTTTATTTTAATTTATTGTTAATATTCTTCCAATGTGATAGTAATCTTTTTTTTTTCATTCAACTTGCAGGCACTCCATCTAATGATAGCTAG mRNA sequence ATGGGTGATGGATTTGGAGGGTCATATACCTTTGTACCAACCACTGTTTCAATCATCCTTGCTGGTCGATTTTCTGATACGACTAATCCTATTGATGTAACAAGTTCAGGTAGACAATGCAGGCAATCTAGGGTGCTCTCATTGTTGCTTCAACCCTTCATATTGTGCTTGGCTTTAATGGTCTGTGGCTTAATGTTTCTAGGCACTCCATCTAATGATAGCTAG Coding sequence (CDS) ATGGGTGATGGATTTGGAGGGTCATATACCTTTGTACCAACCACTGTTTCAATCATCCTTGCTGGTCGATTTTCTGATACGACTAATCCTATTGATGTAACAAGTTCAGGTAGACAATGCAGGCAATCTAGGGTGCTCTCATTGTTGCTTCAACCCTTCATATTGTGCTTGGCTTTAATGGTCTGTGGCTTAATGTTTCTAGGCACTCCATCTAATGATAGCTAG Protein sequence MGDGFGGSYTFVPTTVSIILAGRFSDTTNPIDVTSSGRQCRQSRVLSLLLQPFILCLALMVCGLMFLGTPSNDS
Homology
BLAST of Lag0034280 vs. NCBI nr
Match: PQQ02943.1 (hypothetical protein Pyn_11833 [Prunus yedoensis var. nudiflora]) HSP 1 Score: 53.5 bits (127), Expect = 8.9e-04 Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0
Query: 6 GGSYTFVPTTVSIILAGRFSDTTNPIDVTSSGRQC 41
GGSYTFVPTT+SIILAGRFSD+ +PIDV C
Sbjct: 105 GGSYTFVPTTISIILAGRFSDSDDPIDVFKPTFSC 139
BLAST of Lag0034280 vs. NCBI nr
Match: XP_030531335.1 (nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531336.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531337.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531338.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531339.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531340.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531342.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531343.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531344.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531345.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea]) HSP 1 Score: 53.5 bits (127), Expect = 8.9e-04 Identity = 23/27 (85.19%), Postives = 27/27 (100.00%), Query Frame = 0
Query: 6 GGSYTFVPTTVSIILAGRFSDTTNPID 33
GGSYTFVPTT+SIIL+GRFSDTT+P+D
Sbjct: 101 GGSYTFVPTTISIILSGRFSDTTDPVD 127
BLAST of Lag0034280 vs. NCBI nr
Match: XP_022727213.1 (nucleobase-ascorbate transporter 6-like isoform X1 [Durio zibethinus]) HSP 1 Score: 53.5 bits (127), Expect = 8.9e-04 Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = 0
Query: 6 GGSYTFVPTTVSIILAGRFSDTTNPID 33
GGSYTFVPTT+SIILAGRFSDTT+PI+
Sbjct: 111 GGSYTFVPTTISIILAGRFSDTTDPIE 137
BLAST of Lag0034280 vs. NCBI nr
Match: XP_022727220.1 (nucleobase-ascorbate transporter 6-like isoform X2 [Durio zibethinus] >XP_022727230.1 nucleobase-ascorbate transporter 6-like isoform X2 [Durio zibethinus]) HSP 1 Score: 53.5 bits (127), Expect = 8.9e-04 Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = 0
Query: 6 GGSYTFVPTTVSIILAGRFSDTTNPID 33
GGSYTFVPTT+SIILAGRFSDTT+PI+
Sbjct: 101 GGSYTFVPTTISIILAGRFSDTTDPIE 127
BLAST of Lag0034280 vs. ExPASy Swiss-Prot
Match: Q27GI3 (Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana OX=3702 GN=NAT6 PE=2 SV=2) HSP 1 Score: 52.0 bits (123), Expect = 3.4e-06 Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = 0
Query: 6 GGSYTFVPTTVSIILAGRFSDTTNPID 33
G SYTFVPTT+SIIL+GRFSDT+NPID
Sbjct: 102 GASYTFVPTTISIILSGRFSDTSNPID 128
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| PQQ02943.1 | 8.9e-04 | 71.43 | hypothetical protein Pyn_11833 [Prunus yedoensis var. nudiflora] | [more] |
| XP_030531335.1 | 8.9e-04 | 85.19 | nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531336.1 nucleoba... | [more] |
| XP_022727213.1 | 8.9e-04 | 88.89 | nucleobase-ascorbate transporter 6-like isoform X1 [Durio zibethinus] | [more] |
| XP_022727220.1 | 8.9e-04 | 88.89 | nucleobase-ascorbate transporter 6-like isoform X2 [Durio zibethinus] >XP_022727... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q27GI3 | 3.4e-06 | 85.19 | Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana OX=3702 GN=NAT6 PE=2 ... | [more] |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0022857 |
transmembrane transporter activity |
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