Lag0034280 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034280
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Nucleobase-ascorbate transporter 6
Location	chr3: 5971965 .. 5973163 (+)
RNA-Seq Expression	Lag0034280
Synteny	Lag0034280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGATGGATTTGGAGGGTCATATACCTTTGTACCAACCACTGTTTCAATCATCCTTGCTGGTCGATTTTCTGATACGACTAATCCTATTGATGTAACGTAAATTAAATCCTTTTGTGTAGTTTAACTAAATTGCTTATATGTCAATCTGAGAAATTGATATGAATGGCGAGTGCAGGACTTAATCTTACCGTGACCTTCATGCTATAAGAAATGCTCATTTGTACCTATGAATGACTAATTTTAACTAATGAAAGCTTTCTTCACTAGTTATAATATATACGATCAAAATGGAGCATCAATGCATCAAAACCGCTTATATGATTAATAACTGCATGTTTCATTTGAGGTTGTTGACATTGCTTTGCTACTCATTCAGAAGTTCAGGTAGACAATGCAGGCAATCTAGGGTGCTCTCATTGTTGCTTCAACCCTTCATATTGTGCTTGGCTTTAATGGTCTGTGGCTTAATGTTTCTAGGTTTGTCGACTATTTTCGCTCCATGTCTTTGTTAATATTTTGGGTTTCATCAAGATTATAAGTTTAATTTTGTGTAATAAGTCTTGAAAGATTTCTCGAGCTTGTATTGGTCAAGAACCTTTTTTGTCTTGCATTTTATTGGTTTTCCTTTGGACATGACCTGCAAGTTAGCATTTTGATCTAATGACTTGCCAATGTGATCATTCTTTGTACTTTTTAATTCAAGGAATGAGTTCTTACTTGCACATGGAGTGTGAATGACTTGATCAAATTACACTTTTCTTTTCCATTTTTTAGAAAATAATGTCTAAAACGATTGTTCTTTTTTTCCTTACTTGCTACTTGTTAGTAATGCATAAAATTGTATTATACTCTTGATCTTTTATGTGTTTATGTGTCTATAACTTTATTTTCTATCCTTGTTTATATGAAGATGATGCATGAAAGATGTTGCTTGATGCTGCTATAGTTATAGCTATTGTTTTAGACAGAGATCAAGAATGACTCGGGTATTTTTTTTTTTAGAAAACTTAAGCTATTGTTTTCTATCTCTGGTATAACGCCAACATGTTCCTCTCAGTTAAGCTATTGTTTTATTTTTCTAAGTGTGTTGTCATTTGCCAACTTTATTTTAATTTATTGTTAATATTCTTCCAATGTGATAGTAATCTTTTTTTTTTCATTCAACTTGCAGGCACTCCATCTAATGATAGCTAG

mRNA sequence

ATGGGTGATGGATTTGGAGGGTCATATACCTTTGTACCAACCACTGTTTCAATCATCCTTGCTGGTCGATTTTCTGATACGACTAATCCTATTGATGTAACAAGTTCAGGTAGACAATGCAGGCAATCTAGGGTGCTCTCATTGTTGCTTCAACCCTTCATATTGTGCTTGGCTTTAATGGTCTGTGGCTTAATGTTTCTAGGCACTCCATCTAATGATAGCTAG

Coding sequence (CDS)

ATGGGTGATGGATTTGGAGGGTCATATACCTTTGTACCAACCACTGTTTCAATCATCCTTGCTGGTCGATTTTCTGATACGACTAATCCTATTGATGTAACAAGTTCAGGTAGACAATGCAGGCAATCTAGGGTGCTCTCATTGTTGCTTCAACCCTTCATATTGTGCTTGGCTTTAATGGTCTGTGGCTTAATGTTTCTAGGCACTCCATCTAATGATAGCTAG

Protein sequence

MGDGFGGSYTFVPTTVSIILAGRFSDTTNPIDVTSSGRQCRQSRVLSLLLQPFILCLALMVCGLMFLGTPSNDS

Homology

[Close]

BLAST of Lag0034280 vs. NCBI nr
Match: PQQ02943.1 (hypothetical protein Pyn_11833 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 53.5 bits (127), Expect = 8.9e-04
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 6   GGSYTFVPTTVSIILAGRFSDTTNPIDVTSSGRQC 41
           GGSYTFVPTT+SIILAGRFSD+ +PIDV      C
Sbjct: 105 GGSYTFVPTTISIILAGRFSDSDDPIDVFKPTFSC 139

[Close]

BLAST of Lag0034280 vs. NCBI nr
Match: XP_030531335.1 (nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531336.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531337.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531338.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531339.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531340.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531342.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531343.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531344.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531345.1 nucleobase-ascorbate transporter 6 [Rhodamnia argentea])

HSP 1 Score: 53.5 bits (127), Expect = 8.9e-04
Identity = 23/27 (85.19%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 6   GGSYTFVPTTVSIILAGRFSDTTNPID 33
           GGSYTFVPTT+SIIL+GRFSDTT+P+D
Sbjct: 101 GGSYTFVPTTISIILSGRFSDTTDPVD 127

[Close]

BLAST of Lag0034280 vs. NCBI nr
Match: XP_022727213.1 (nucleobase-ascorbate transporter 6-like isoform X1 [Durio zibethinus])

HSP 1 Score: 53.5 bits (127), Expect = 8.9e-04
Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 6   GGSYTFVPTTVSIILAGRFSDTTNPID 33
           GGSYTFVPTT+SIILAGRFSDTT+PI+
Sbjct: 111 GGSYTFVPTTISIILAGRFSDTTDPIE 137

[Close]

BLAST of Lag0034280 vs. NCBI nr
Match: XP_022727220.1 (nucleobase-ascorbate transporter 6-like isoform X2 [Durio zibethinus] >XP_022727230.1 nucleobase-ascorbate transporter 6-like isoform X2 [Durio zibethinus])

HSP 1 Score: 53.5 bits (127), Expect = 8.9e-04
Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 6   GGSYTFVPTTVSIILAGRFSDTTNPID 33
           GGSYTFVPTT+SIILAGRFSDTT+PI+
Sbjct: 101 GGSYTFVPTTISIILAGRFSDTTDPIE 127

[Close]

BLAST of Lag0034280 vs. ExPASy Swiss-Prot
Match: Q27GI3 (Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana OX=3702 GN=NAT6 PE=2 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 3.4e-06
Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 6   GGSYTFVPTTVSIILAGRFSDTTNPID 33
           G SYTFVPTT+SIIL+GRFSDT+NPID
Sbjct: 102 GASYTFVPTTISIILSGRFSDTSNPID 128

The following BLAST results are available for this feature:

BLAST of Lag0034280 vs. NCBI nr


Match Name	E-value	Identity	Description
PQQ02943.1	8.9e-04	71.43	hypothetical protein Pyn_11833 [Prunus yedoensis var. nudiflora]	[more]
XP_030531335.1	8.9e-04	85.19	nucleobase-ascorbate transporter 6 [Rhodamnia argentea] >XP_030531336.1 nucleoba...	[more]
XP_022727213.1	8.9e-04	88.89	nucleobase-ascorbate transporter 6-like isoform X1 [Durio zibethinus]	[more]
XP_022727220.1	8.9e-04	88.89	nucleobase-ascorbate transporter 6-like isoform X2 [Durio zibethinus] >XP_022727...	[more]

BLAST of Lag0034280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q27GI3	3.4e-06	85.19	Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana OX=3702 GN=NAT6 PE=2 ...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034280.1	Lag0034280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity