Lag0034205 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034205
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	succinate dehydrogenase subunit 7B, mitochondrial-like
Location	chr3: 5263503 .. 5264935 (+)
RNA-Seq Expression	Lag0034205
Synteny	Lag0034205

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTTTTCCTCAACAAAACCACTCTTGCCTCTCATTTCCGATCTCAATCCCAGGTTCTTTCTCCTTCGATCGCCTCTTAGCTTATCTTTTTCTTAATCTTTCTTTCGTTCTCTCTCTCTCAATCTTTTGAGCTTTTTGATTGACCAACAGGTGGATCCTTCATCAATCTCGCGCCATGGATTCCACGTCGAACCAGGGACTCGTGAAAAGGCTGTAAGCATGTCGAACTTTCTTCTCGTTATTTTCTATCTTTAATTGTTCTTGTAGCGGTTTATTCCGCAGCTCCATTGAATTAGTTGATATCTTGTAGTTACATGTTAAGTTTTTCTCGTATGGCTGTCTATCTAGTTCCTTTTGCTTTATTGTATTTGATTCTTTCGAGGCCGGTATAGATAGAAGCTTTTCGAAGCTGTTCAGATCAAACTGCTTGAACTCCTGTATTTAGGTCCATGAAATTAGAGGGGATGGGAGTTGCCATGCCGTTTTTTTAACTAACCTGTTCCTATGCCAATGGCATGAAACCCTGGTGAAAGGTTTTAAGTTCCTTGTAGTGGGGAAAGTTACGGGTTTGCTTTGCATGTATGTAGTATGTTCTCAAACTTTGCTAGTATAATTTCCACGGCGATACTTTCTTGAGCACTCTTTTCGAAAATATTTATTCCTTACATTTTATGAAGGGCATTTCTCTACTCGTGGATAAGTAAACATGTCTACCAAATTTTTGGTTCGCCTCTTGCATTTGTTTGATGCTGTTTAGTTGCTAAGCATGTGATTGTAATGATTTATTGCTGCATTGAGTTTTTGCGATGTTGAATGTCTGGCAGTTATTAGCTGAGGACCCTTCTCTTAGGCGGTTCAGATCACACAAGAAAGATGTCTCTCGACTCAAAAGACTTGGAGATGTTCTGACAATTGTGGTTGTTGCAGGTACTAGTCTTTTTGCCGTTAAATAAATTCTTCTCTCTTTGTCCAGCGTGGTCCTTGCTCTGCAACATTGATGTAGATGGTGTGTGGTTTGAATCTTTTGAATGATGTATGTCGTTACAAGATTGTCAAATTTTTACGGGCTTCTTAGAGGTGAAGATTGGCTTTGGCATTTTGAATGGAAACAAGCATGGACTGCAATATGCTTGTTTTTTGGTTGATTTTTGATACTACGTTAGATGAAAAGTAACTTAAGTCAACTTAGATGGAATACTAATGAAATGAAAGAGAAGAGCCAAACAAACATTGTCCATCTGAGTTTTTTGTCTTTAAGATTCTTCTATTCCTTTCTTCCCTTAATTCACTACAAATTTCTGAAAGGAAACTGGAGTAAGTAGAATGAATATGATCTTGGTTGCCAGTGATGCCTCCATGTAGCTTGGGGTATTTCTGCAGAACCCCAATCAGGTTAAAGGTTCTTGGCCACTTGCATCGAAGTGTTTGA

mRNA sequence

ATGGCGTTTTTCCTCAACAAAACCACTCTTGCCTCTCATTTCCGATCTCAATCCCAGGTGGATCCTTCATCAATCTCGCGCCATGGATTCCACGTCGAACCAGGGACTCGTGAAAAGGCTTTATTAGCTGAGGACCCTTCTCTTAGGCGGTTCAGATCACACAAGAAAGATGTCTCTCGACTCAAAAGACTTGGAGATGTTCTGACAATTGTGGTTGTTGCAGTGATGCCTCCATGTAGCTTGGGGTATTTCTGCAGAACCCCAATCAGGTTAAAGGTTCTTGGCCACTTGCATCGAAGTGTTTGA

Coding sequence (CDS)

ATGGCGTTTTTCCTCAACAAAACCACTCTTGCCTCTCATTTCCGATCTCAATCCCAGGTGGATCCTTCATCAATCTCGCGCCATGGATTCCACGTCGAACCAGGGACTCGTGAAAAGGCTTTATTAGCTGAGGACCCTTCTCTTAGGCGGTTCAGATCACACAAGAAAGATGTCTCTCGACTCAAAAGACTTGGAGATGTTCTGACAATTGTGGTTGTTGCAGTGATGCCTCCATGTAGCTTGGGGTATTTCTGCAGAACCCCAATCAGGTTAAAGGTTCTTGGCCACTTGCATCGAAGTGTTTGA

Protein sequence

MAFFLNKTTLASHFRSQSQVDPSSISRHGFHVEPGTREKALLAEDPSLRRFRSHKKDVSRLKRLGDVLTIVVVAVMPPCSLGYFCRTPIRLKVLGHLHRSV

Homology

[Close]

BLAST of Lag0034205 vs. NCBI nr
Match: XP_022135509.1 (succinate dehydrogenase subunit 7B, mitochondrial-like [Momordica charantia])

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-28
Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MAFFLNKTTLASHFRSQSQVDPSSISRHGFHVEPGTREKALLAEDPSLRRFRSHKKDVSR 60
          MAFFLN+TTLASHFRSQSQ DPSS+SR GFHVEPGTREKALLAEDPSLRRFRSHKK VSR
Sbjct: 1  MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61 LKRLGDVLTIVVVA 75
          +KR+GD+LTIVVVA
Sbjct: 61 IKRMGDILTIVVVA 74

[Close]

BLAST of Lag0034205 vs. NCBI nr
Match: XP_038880267.1 (succinate dehydrogenase subunit 7A, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 135.6 bits (340), Expect = 2.4e-28
Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MAFFLNKTTLASHFRSQSQVDPSSISRHGFHVEPGTREKALLAEDPSLRRFRSHKKDVSR 60
          MAFFLNKTTLASHFRSQSQVDPSS+SR GFHVEPG REKALLAEDPSLRRF+SHKK VSR
Sbjct: 1  MAFFLNKTTLASHFRSQSQVDPSSLSRRGFHVEPGAREKALLAEDPSLRRFKSHKKGVSR 60

Query: 61 LKRLGDVLTIVVVA 75
          +KR+GD+LTIVVVA
Sbjct: 61 IKRIGDILTIVVVA 74

[Close]

BLAST of Lag0034205 vs. NCBI nr
Match: XP_031741717.1 (succinate dehydrogenase subunit 7B, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 2.4e-28
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MAFFLNKTTLASHFRSQSQVDPSSISRHGFHVEPGTREKALLAEDPSLRRFRSHKKDVSR 60
          MAFFLNK+TLASHFRSQSQVDPSS+SR GFHVEPGTREKALLAEDP LRRFRSHKK VSR
Sbjct: 1  MAFFLNKSTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSR 60

Query: 61 LKRLGDVLTIVVVA 75
          LKR+GDVLTIVVVA
Sbjct: 61 LKRVGDVLTIVVVA 74

[Close]

BLAST of Lag0034205 vs. NCBI nr
Match: XP_004138127.1 (succinate dehydrogenase subunit 7B, mitochondrial isoform X1 [Cucumis sativus] >KAE8652406.1 hypothetical protein Csa_013486 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 2.4e-28
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MAFFLNKTTLASHFRSQSQVDPSSISRHGFHVEPGTREKALLAEDPSLRRFRSHKKDVSR 60
          MAFFLNK+TLASHFRSQSQVDPSS+SR GFHVEPGTREKALLAEDP LRRFRSHKK VSR
Sbjct: 1  MAFFLNKSTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSR 60

Query: 61 LKRLGDVLTIVVVA 75
          LKR+GDVLTIVVVA
Sbjct: 61 LKRVGDVLTIVVVA 74

[Close]

BLAST of Lag0034205 vs. NCBI nr
Match: XP_023529214.1 (succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.0 bits (336), Expect = 7.0e-28
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  MAFFLNKTTLASHFRSQSQVDPSSISRHGFHVEPGTREKALLAEDPSLRRFRSHKKDVSR 60
          MAF LNKTT ASHFRSQSQVDPSS+SR GFHVEPGTREKALLAEDPSLRRFRSHKK VSR
Sbjct: 1  MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61 LKRLGDVLTIVVVA 75
          +K++GDVLTIVVVA
Sbjct: 61 IKKIGDVLTIVVVA 74

[Close]

BLAST of Lag0034205 vs. ExPASy Swiss-Prot
Match: Q3E870 (Succinate dehydrogenase subunit 7B, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH7B PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.1e-21
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1  MAFFLNKTTLASHFRSQSQV---DPSSISRHGFHVEPGTREKALLAEDPSLRRFRSHKKD 60
          MAF LN  +++SH RS S     D  SISR GFH+EPGTREKALLAED +L+RF+SHKK 
Sbjct: 1  MAFLLNNASISSHLRSSSSQKTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKS 60

Query: 61 VSRLKRLGDVLTIVVVA 75
          V +LKR+GDVLT+VVVA
Sbjct: 61 VHKLKRIGDVLTVVVVA 77

[Close]

BLAST of Lag0034205 vs. ExPASy Swiss-Prot
Match: Q9C5E8 (Succinate dehydrogenase subunit 7A, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH7A PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.2e-19
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 1  MAFFLNKTTLASHFRSQSQVDPSSI--SRHGFHVEPGTREKALLAEDPSLRRFRSHKKDV 60
          MAF LN T+++SH RS SQ    ++  SR GFHVE G REKALLAED SLRRF+SHKK V
Sbjct: 1  MAFLLN-TSISSHLRSSSQKTDGALAQSRRGFHVELGAREKALLAEDASLRRFKSHKKGV 60

Query: 61 SRLKRLGDVLTIVVVA 75
           RLKR+GDVLT+VVVA
Sbjct: 61 HRLKRIGDVLTVVVVA 75

[Close]

BLAST of Lag0034205 vs. ExPASy Swiss-Prot
Match: Q6H611 (Succinate dehydrogenase subunit 7, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH7 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 27 RHGFHVEPGTREKALLAEDPSLRRFRSHKKDVSRLKRLGDVLTIVVV 74
          R GFHVE G REKALL ED +L+RF+S+K  V ++ ++G++LT VV+
Sbjct: 31 RRGFHVELGAREKALLEEDTALKRFKSYKNSVKQVSKVGNILTGVVL 77

The following BLAST results are available for this feature:

BLAST of Lag0034205 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135509.1	1.9e-28	89.19	succinate dehydrogenase subunit 7B, mitochondrial-like [Momordica charantia]	[more]
XP_038880267.1	2.4e-28	89.19	succinate dehydrogenase subunit 7A, mitochondrial-like [Benincasa hispida]	[more]
XP_031741717.1	2.4e-28	91.89	succinate dehydrogenase subunit 7B, mitochondrial isoform X2 [Cucumis sativus]	[more]
XP_004138127.1	2.4e-28	91.89	succinate dehydrogenase subunit 7B, mitochondrial isoform X1 [Cucumis sativus] >...	[more]
XP_023529214.1	7.0e-28	89.19	succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]

BLAST of Lag0034205 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E870	5.1e-21	66.23	Succinate dehydrogenase subunit 7B, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9C5E8	6.2e-19	68.42	Succinate dehydrogenase subunit 7A, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q6H611	1.1e-07	55.32	Succinate dehydrogenase subunit 7, mitochondrial OS=Oryza sativa subsp. japonica...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034573	Succinate dehydrogenase subunit 7, mitochondrial	PANTHER	PTHR36041	SUCCINATE DEHYDROGENASE SUBUNIT 7A, MITOCHONDRIAL-RELATED	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034205.1	Lag0034205.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
molecular_function	GO:0043495	protein-membrane adaptor activity