Lag0032635 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032635
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	UBN2_3 domain-containing protein
Location	chr11: 35492894 .. 35493283 (+)
RNA-Seq Expression	Lag0032635
Synteny	Lag0032635

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACGCCTCTTCATCCTCCAGTTCCATCCTGACCGTCGGAGCAACGACGTTCCCCAGTCCACCACTCAACCAGCTACTGAACCAGATTACCACCATCAAGTTGGATCGTGGGAATTATTTACTCTGGAAAAACCTAGCCATGCCAATTCTTCGAAGTTATAAGCTCGAAGGACACCTGTTGGGCACAAAAACGTGCCCTCCGATGCTCATTCAACAACCTGGAGAACCAAATACTACTCCTACTGAAGCAACAGCAGGAACATCAAGCTCGCAGACTGATGCAAGCAGAGCACCACCTATGAAATTCGAATGGTCACAAATCCAGAATATGAAGCTTGGATGGCAGTCGATCAACTTCTCTTGGGCTGGTTGTATAACTCAATGA

mRNA sequence

ATGGCCAACGCCTCTTCATCCTCCAGTTCCATCCTGACCGTCGGAGCAACGACGTTCCCCAGTCCACCACTCAACCAGCTACTGAACCAGATTACCACCATCAAGTTGGATCGTGGGAATTATTTACTCTGGAAAAACCTAGCCATGCCAATTCTTCGAAGTTATAAGCTCGAAGGACACCTGTTGGGCACAAAAACGTGCCCTCCGATGCTCATTCAACAACCTGGAGAACCAAATACTACTCCTACTGAAGCAACAGCAGGAACATCAAGCTCGCAGACTGATGCAAGCAGAGCACCACCTATGAAATTCGAATGGTCACAAATCCAGAATATGAAGCTTGGATGGCAGTCGATCAACTTCTCTTGGGCTGGTTGTATAACTCAATGA

Coding sequence (CDS)

ATGGCCAACGCCTCTTCATCCTCCAGTTCCATCCTGACCGTCGGAGCAACGACGTTCCCCAGTCCACCACTCAACCAGCTACTGAACCAGATTACCACCATCAAGTTGGATCGTGGGAATTATTTACTCTGGAAAAACCTAGCCATGCCAATTCTTCGAAGTTATAAGCTCGAAGGACACCTGTTGGGCACAAAAACGTGCCCTCCGATGCTCATTCAACAACCTGGAGAACCAAATACTACTCCTACTGAAGCAACAGCAGGAACATCAAGCTCGCAGACTGATGCAAGCAGAGCACCACCTATGAAATTCGAATGGTCACAAATCCAGAATATGAAGCTTGGATGGCAGTCGATCAACTTCTCTTGGGCTGGTTGTATAACTCAATGA

Protein sequence

MANASSSSSSILTVGATTFPSPPLNQLLNQITTIKLDRGNYLLWKNLAMPILRSYKLEGHLLGTKTCPPMLIQQPGEPNTTPTEATAGTSSSQTDASRAPPMKFEWSQIQNMKLGWQSINFSWAGCITQ

Homology

[Close]

BLAST of Lag0032635 vs. NCBI nr
Match: KAA0060627.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 5.5e-17
Identity = 58/120 (48.33%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 1   MANASSSSSSILTVGATTFPSPPLNQLLNQITTIKLDRGNYLLWKNLAMPILRSYKLEGH 60
           MANA     S++    T F +PPLNQLLNQ++++KLDRGNYLLWK LA+PI++SYK EGH
Sbjct: 1   MANA----VSLVEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGH 60

Query: 61  LLGTKTCPPMLI-QQPGEPNTT---PTEATAGTSSSQTDASRAPPMKFEWSQIQNMKLGW 117
           L G   CPP  I  Q GE  +      EAT G SS  T      P   +W     + LGW
Sbjct: 61  LTGENPCPPKFITNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLGW 116

[Close]

BLAST of Lag0032635 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 5.5e-17
Identity = 58/120 (48.33%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 1   MANASSSSSSILTVGATTFPSPPLNQLLNQITTIKLDRGNYLLWKNLAMPILRSYKLEGH 60
           MANA     S++    T F +PPLNQLLNQ++++KLDRGNYLLWK LA+PI++SYK EGH
Sbjct: 1   MANA----VSLVEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGH 60

Query: 61  LLGTKTCPPMLI-QQPGEPNTT---PTEATAGTSSSQTDASRAPPMKFEWSQIQNMKLGW 117
           L G   CPP  I  Q GE  +      EAT G SS  T      P   +W     + LGW
Sbjct: 61  LTGENPCPPKFITNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLGW 116

[Close]

BLAST of Lag0032635 vs. NCBI nr
Match: KAA0066132.1 (putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa] >TYK15175.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 55/127 (43.31%), Postives = 72/127 (56.69%), Query Frame = 0


Query: 1   MANASSSSSSILTVGATTFPSPPLNQLLNQITTIKLDRGNYLLWKNLAMPILRSYKLEGH 60
           MANA+  + S+L   AT+F +PPLNQ+LNQ+TTIKLDR NYLLWK LA+PIL+ YKLEGH
Sbjct: 1   MANATPPNFSVLDTPATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGH 60

Query: 61  LLGTKTCPPMLIQQPGEPNTTPTEATAG-----------TSSSQTDASRAPPMKFEWSQI 117
           L G K CP   +       +  +    G            SSS +  +   P+  +W   
Sbjct: 61  LTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIMT 120

[Close]

BLAST of Lag0032635 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-16
Identity = 53/103 (51.46%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 14  VGATTFPSPPLNQLLNQITTIKLDRGNYLLWKNLAMPILRSYKLEGHLLGTKTCPPMLIQ 73
           V    F SPPLNQLLNQIT+IK+DRGN+LLW+NLA+PILRSYKL  +L G K CPP  + 
Sbjct: 17  VSGAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHL- 76

Query: 74  QPGEPNTTPTEATAGTSSSQTDASRAPPMKFEWSQIQNMKLGW 117
               P  TPT    G++SSQ+  +  P  +  W  +  + LGW
Sbjct: 77  ---VPTDTPTN-IEGSTSSQSSPTLNPTYE-AWIVVDKLLLGW 113

[Close]

BLAST of Lag0032635 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 7.9e-16
Identity = 48/107 (44.86%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 10  SILTVGATTFPSPPLNQLLNQITTIKLDRGNYLLWKNLAMPILRSYKLEGHLLGTKTCPP 69
           S++    T F +PPLNQ+LNQ+ ++KLDRGNYLLW+ LA+PIL+SYKL+GHL     CPP
Sbjct: 6   SLIGSSTTNFSNPPLNQILNQLASVKLDRGNYLLWQTLALPILKSYKLQGHLTEENQCPP 65

Query: 70  MLIQQPGEPNTTPTEATAGTSSSQTDASRAPPMKFEWSQIQNMKLGW 117
             I  P          T G SS  T      P   +W     + LGW
Sbjct: 66  KFIINP----------TCGASSRSTTTKTVNPKFDQWVTFDLLLLGW 102

The following BLAST results are available for this feature:

BLAST of Lag0032635 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060627.1	5.5e-17	48.33	Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]	[more]
TYK02246.1	5.5e-17	48.33	uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]	[more]
KAA0066132.1	1.2e-16	43.31	putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. mak...	[more]
XP_022151683.1	2.7e-16	51.46	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
XP_031745012.1	7.9e-16	44.86	uncharacterized protein LOC116405217 [Cucumis sativus]	[more]

BLAST of Lag0032635 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032635.1	Lag0032635.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups