Lag0031263 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031263
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSerine-rich protein-like protein
Locationchr11: 6396870 .. 6397223 (+)
RNA-Seq ExpressionLag0031263
SyntenyLag0031263
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCATCTTTCCGAGCCAAATCTCGACAATCCGCCGTATCCTCGCCGTCGCGAGGCTACATTTCTTCTCCGTCGGCTTTCGCTTCCTCCAGTACGACTTTCTTGTCTCGACCGTCGTCTCCCAAGCTTGCGAGGATGTATGGAAAATCTTCGTGTTCGTCTTCGTCATCATCGGCGGCGTCGGCGTCTGTGAGGTTTCAGACTGATCGGAGGTCGGCATCGTCCGGCAGTACGATTTCGGTTCAGAAGAGAAGCGACAATAACACGAATGCGGTGTCGTCGAACAAGAAGAAAGCGTGCATGTGTTCTCCGACGAATCATCCAGGTTCGTTCAGGTGTTCTCTCTATTAA

mRNA sequence

ATGGCTTCATCTTTCCGAGCCAAATCTCGACAATCCGCCGTATCCTCGCCGTCGCGAGGCTACATTTCTTCTCCGTCGGCTTTCGCTTCCTCCAGTACGACTTTCTTGTCTCGACCGTCGTCTCCCAAGCTTGCGAGGATGTATGGAAAATCTTCGTGTTCGTCTTCGTCATCATCGGCGGCGTCGGCGTCTGTGAGGTTTCAGACTGATCGGAGGTCGGCATCGTCCGGCAGTACGATTTCGGTTCAGAAGAGAAGCGACAATAACACGAATGCGGTGTCGTCGAACAAGAAGAAAGCGTGCATGTGTTCTCCGACGAATCATCCAGGTTCGTTCAGGTGTTCTCTCTATTAA

Coding sequence (CDS)

ATGGCTTCATCTTTCCGAGCCAAATCTCGACAATCCGCCGTATCCTCGCCGTCGCGAGGCTACATTTCTTCTCCGTCGGCTTTCGCTTCCTCCAGTACGACTTTCTTGTCTCGACCGTCGTCTCCCAAGCTTGCGAGGATGTATGGAAAATCTTCGTGTTCGTCTTCGTCATCATCGGCGGCGTCGGCGTCTGTGAGGTTTCAGACTGATCGGAGGTCGGCATCGTCCGGCAGTACGATTTCGGTTCAGAAGAGAAGCGACAATAACACGAATGCGGTGTCGTCGAACAAGAAGAAAGCGTGCATGTGTTCTCCGACGAATCATCCAGGTTCGTTCAGGTGTTCTCTCTATTAA

Protein sequence

MASSFRAKSRQSAVSSPSRGYISSPSAFASSSTTFLSRPSSPKLARMYGKSSCSSSSSSAASASVRFQTDRRSASSGSTISVQKRSDNNTNAVSSNKKKACMCSPTNHPGSFRCSLY
Homology
BLAST of Lag0031263 vs. NCBI nr
Match: XP_038877738.1 (uncharacterized protein LOC120069962 [Benincasa hispida])

HSP 1 Score: 131.3 bits (329), Expect = 5.3e-27
Identity = 84/118 (71.19%), Postives = 91/118 (77.12%), Query Frame = 0

Query: 1   MASSFRAKSRQSAVSSPSRGYISSPSAFASSSTTFLSRPSSPKLARMYGKSSCSS-SSSS 60
           MA SF AKSR+SA S PSRGYISSPSAFASSST F+SRPSS     MY KS  SS S SS
Sbjct: 1   MAFSFGAKSRKSASSLPSRGYISSPSAFASSSTAFMSRPSSTAPVAMYRKSPSSSLSPSS 60

Query: 61  AASASVRFQTDRRSASSGSTISVQKRSDNNTNAVSSNKKKACMCSPTNHPGSFRCSLY 118
           +A +SVRFQ D+RSAS   +ISVQK  D N NAV SNKKK CMCSPT HPGSFRCSL+
Sbjct: 61  SAVSSVRFQIDQRSASPSRSISVQKNRDRNANAVPSNKKKTCMCSPTKHPGSFRCSLH 118

BLAST of Lag0031263 vs. NCBI nr
Match: XP_008454197.1 (PREDICTED: uncharacterized protein LOC103494676 [Cucumis melo] >KAA0044464.1 serine-rich protein-like protein [Cucumis melo var. makuwa] >TYK29591.1 serine-rich protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 69/117 (58.97%), Postives = 83/117 (70.94%), Query Frame = 0

Query: 1   MASSFRAKSRQSAVSSPSRGYISSPSAFASSSTTFLSRPSSPKLARMYGKSSCSSSSSSA 60
           MAS   A+S QSA S  SR Y  S SAFASSST F SRPSS K   M  KSS ++  +++
Sbjct: 1   MASPSGAESPQSATSLRSRCYFISHSAFASSSTAFTSRPSSTKPVAMSRKSSPAAVLTAS 60

Query: 61  ASASVRFQTDRRSASSGSTISVQKRSDNNTNAVSSNKKKACMCSPTNHPGSFRCSLY 118
             +S+RFQ D+RSAS   +ISVQK  D+N NAV SNK+K C+CSPT HPGSFRCSL+
Sbjct: 61  TVSSLRFQIDQRSASPSRSISVQKNRDSNANAVPSNKRKVCVCSPTKHPGSFRCSLH 117

BLAST of Lag0031263 vs. NCBI nr
Match: XP_004152334.1 (uncharacterized protein LOC101207294 [Cucumis sativus] >KGN52922.1 hypothetical protein Csa_015077 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 4.5e-18
Identity = 73/119 (61.34%), Postives = 81/119 (68.07%), Query Frame = 0

Query: 1   MASSFRAKSRQSAVSSPSRGYISSPSAFASSSTTFLSRPSSPKLARMYGKSSCSSSSSSA 60
           MAS   A+SRQSA S  SR YI+S SAFASSST F SRPSS K   M  KS         
Sbjct: 1   MASPSGAESRQSATSLRSRCYITSHSAFASSSTAFTSRPSSTKPVTMSRKS--------- 60

Query: 61  ASASVRFQTDRRSAS-SGSTISVQKRSDNNTNAVSSNKKKA-CMCSPTNHPGSFRCSLY 118
              S+RFQTD+RSAS S  ++SVQK  D+N NAV SNKKK  CMCSPT HPGSFRCSL+
Sbjct: 61  ---SLRFQTDQRSASPSRRSVSVQKNRDSNANAVPSNKKKVMCMCSPTKHPGSFRCSLH 107

BLAST of Lag0031263 vs. NCBI nr
Match: XP_022956255.1 (uncharacterized protein LOC111458006 [Cucurbita moschata])

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 74/127 (58.27%), Postives = 84/127 (66.14%), Query Frame = 0

Query: 1   MASSFRAKSRQ--------SAVSSPSRGYISSPSAFASSSTTFLSRPSSPK--LARMYGK 60
           MAS   +KSRQ        S++ S SR  ISSPS FASSST FLSRP   +  +  M GK
Sbjct: 1   MASLIGSKSRQISSPSPFASSIGSKSR-QISSPSPFASSSTAFLSRPLEGRFLVEAMCGK 60

Query: 61  SSCSSSSSSAASASVRFQTDRRSASSGSTISVQKRSDNNTNAVSSNKKKACMCSPTNHPG 118
            +CSSS      ASVRFQ D R AS G +ISVQK  + N NAVSSNKKK CMCSP+ HPG
Sbjct: 61  YACSSS-----EASVRFQIDGRPASPGRSISVQKNRERNANAVSSNKKKWCMCSPSTHPG 120

BLAST of Lag0031263 vs. NCBI nr
Match: XP_022153483.1 (uncharacterized protein LOC111020980 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 80/125 (64.00%), Postives = 90/125 (72.00%), Query Frame = 0

Query: 1   MASSFRAKSRQSAVSSPSRGYI-SSPSAFASSSTTFLS-----RPSSPKLARMYGKSSCS 60
           MASS   +SR+SA    S GY  SSPS FASSS+TF +     R SSP    M GKSS S
Sbjct: 1   MASSSGVESRRSA----SGGYYRSSPSPFASSSSTFSARSSTFRSSSPNRVAMNGKSSSS 60

Query: 61  -SSSSSAASASVRFQTDRRSASS-GSTISVQKRSDNNTNAVSSNKKKACMCSPTNHPGSF 118
            SSSSSAA+ASVRFQ DR S++S G +ISVQK  + N NAVSSNKKK CMCSPT HPGSF
Sbjct: 61  LSSSSSAAAASVRFQIDRGSSTSPGRSISVQKARE-NANAVSSNKKKVCMCSPTTHPGSF 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038877738.15.3e-2771.19uncharacterized protein LOC120069962 [Benincasa hispida][more]
XP_008454197.11.2e-1858.97PREDICTED: uncharacterized protein LOC103494676 [Cucumis melo] >KAA0044464.1 ser... [more]
XP_004152334.14.5e-1861.34uncharacterized protein LOC101207294 [Cucumis sativus] >KGN52922.1 hypothetical ... [more]
XP_022956255.11.7e-1758.27uncharacterized protein LOC111458006 [Cucurbita moschata][more]
XP_022153483.11.7e-1764.00uncharacterized protein LOC111020980 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..101
NoneNo IPR availablePANTHERPTHR33132OSJNBB0118P14.9 PROTEINcoord: 6..116
NoneNo IPR availablePANTHERPTHR33132:SF80BNACNNG20100D PROTEINcoord: 6..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031263.1Lag0031263.1mRNA