Lag0030948 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0030948
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr11: 3120185 .. 3120965 (+)
RNA-Seq Expression	Lag0030948
Synteny	Lag0030948

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATTCCTAGTAAGGTGAAGATCTTTTTTGGAGATCTTATCATAACTCTATCCCAACAAGGAATATTAACCTTGGGAGTCATCATGTTAGGATTTGTCATGTTTGTCAAGAAGATATGGAGACCACAGATCATGCTCTTTTCATGTGTAAGAGAGCTAGGGGGTATGGGATGTTTTATTTCCTTCTTTTGTTGGAAATTCTTATCCCTTGGATATTAAAGAGCGTTGGTTGAGTCTTAATGAGCATTGTGGGCGTGATATTGAAAAGATTTGTGTGTCAGCCTGGTCAATTTGGAACGATAGGAATAGTTTGGTCCATAATCAACCAATTCCATCTGTTGCAAGGAGATGTGAATGGATTGATGCTTATCTTGCTGAATATTGGACGACTAATCCAAAGGGTGTAACCCTTGAACAATCTGAGGATGATGTCTCATGCCTTATTTCGAAAAGTGAGGAGATTATTTTAAATACCAATGGAGCGTATATAGGAACTAATTGCAAAAGTGGTATTGGGTTAGTCATGCGGGATAGATCTGGTTATCTCCAGGCTACTTAGTCATTAATTTCATCAGTTTCTACATCGCCCTTAGGGGTTGAAGTGGAAGCAATGTTACAAGGGCTTCGCCTTGCCAGAACAATGAGAGTTCTTCGGTTAAAGGTTATGTCTGATTCACTGAACTTGATTAAATCTATAAATGAGGAGATTAAATGTGAATCTTGTATGAGTCCACTCTATGGGATATTCGAGCGATTTGATTTGAGTTTGCCAAGGTGA

mRNA sequence

ATGAGGATTCCTAGTAAGGTGAAGATCTTTTTTGGAGATCTTATCATAACTCTATCCCAACAAGGAATATTAACCTTGGGAGTCATCATGTTAGGATTTGTCATGTTTGTCAAGAAGATATGGAGACCACAGATCATGCTCTTTTCATGTGTAAGAGAGCTAGGGGCCTGGTCAATTTGGAACGATAGGAATAGTTTGGTCCATAATCAACCAATTCCATCTGTTGCAAGGAGATGTGAATGGATTGATGCTTATCTTGCTGAATATTGGACGACTAATCCAAAGGGTGTAACCCTTGAACAATCTGAGGATGATGTCTCATGCCTTATTTCGAAAAGGGTTGAAGTGGAAGCAATGTTACAAGGGCTTCGCCTTGCCAGAACAATGAGAGTTCTTCGGTTAAAGGTTATGTCTGATTCACTGAACTTGATTAAATCTATAAATGAGGAGATTAAATGTGAATCTTGTATGAGTCCACTCTATGGGATATTCGAGCGATTTGATTTGAGTTTGCCAAGGTGA

Coding sequence (CDS)

ATGAGGATTCCTAGTAAGGTGAAGATCTTTTTTGGAGATCTTATCATAACTCTATCCCAACAAGGAATATTAACCTTGGGAGTCATCATGTTAGGATTTGTCATGTTTGTCAAGAAGATATGGAGACCACAGATCATGCTCTTTTCATGTGTAAGAGAGCTAGGGGCCTGGTCAATTTGGAACGATAGGAATAGTTTGGTCCATAATCAACCAATTCCATCTGTTGCAAGGAGATGTGAATGGATTGATGCTTATCTTGCTGAATATTGGACGACTAATCCAAAGGGTGTAACCCTTGAACAATCTGAGGATGATGTCTCATGCCTTATTTCGAAAAGGGTTGAAGTGGAAGCAATGTTACAAGGGCTTCGCCTTGCCAGAACAATGAGAGTTCTTCGGTTAAAGGTTATGTCTGATTCACTGAACTTGATTAAATCTATAAATGAGGAGATTAAATGTGAATCTTGTATGAGTCCACTCTATGGGATATTCGAGCGATTTGATTTGAGTTTGCCAAGGTGA

Protein sequence

MRIPSKVKIFFGDLIITLSQQGILTLGVIMLGFVMFVKKIWRPQIMLFSCVRELGAWSIWNDRNSLVHNQPIPSVARRCEWIDAYLAEYWTTNPKGVTLEQSEDDVSCLISKRVEVEAMLQGLRLARTMRVLRLKVMSDSLNLIKSINEEIKCESCMSPLYGIFERFDLSLPR

Homology

The following BLAST results are available for this feature:

BLAST of Lag0030948 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0030948 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 83..168 e-value: 1.2E-5 score: 27.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0030948.1	Lag0030948.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding