Lag0030825 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0030825
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptioncentromere protein F
Locationchr11: 1780180 .. 1782211 (-)
RNA-Seq ExpressionLag0030825
SyntenyLag0030825
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATGAATTCAAGCCATCACTTGTTGTTGAATCTGATTCGCTCGAAGTCACTGGGGTTCTTAACCGCAAGATTGAGGACTTATCTGATCTATCGTTGATTGTAGAAGAGATCGAGGGGATTAGAGAGAGTGCCAACGTTATTTCCTTCGTCAAATCTTCGAGATCGAGGAGTGTGGAAGCTCACAATTTGGCGCGAGCAACAATCTCCTATGAGATTTTGATGGTTTTTTTGGGCATTTTTAGTTCCCGCTTTTTGGGGAAAGTGAATGCAATAGGGATGTTGTTATCCTTTTTTGAGTATATTCATGTATGTCTAATGTGGTTGGTGTAACCACTTGTTTTTGTAGATGGCAATACATACAATTGAGTTATCATCAAACTAACCTTATCACATATGGACTTAATAGAACATTGAATCCATCTTGTACCGAAGTAACTATTTAATTTAGACTTCCAAGAAAGACCTTCCACTATTTCTTGTCTAAGAGCTACCAGATATTTGTCATTTATTTTTGGTATGTACCTTAAGGGATCAGTTTTCCACGACTCAGTTTTCAGTGTTAAGGCAGCCCACTAATGTTTGCTTGGCCCATTCGTTTGTATCATTCTTTGGCCCATTGTGTTTTAGGCCCAGTCTTGCTTATATCTGATTGTTGCTCTACCCGATTGTATTTGCTAGGGTTTTTGCTTATTCTTCATGCAATTTCTGTTGAGAGAAAAGAACATTCCAGAGAGGGTAAGGCTGAGAGTTTTTGAGAGATTTTTGTAGGAGTTTTTCTCCCAAGCCTTTATATATGGTTTGATGATATTGATTCCCCATATATAAAAGCATAAGGTTTTCTCCTGCATTTCCTTTCTCTTCTTCTTTATTTTTGTTAATTTTCAGCTCCTTAATTACATCACACAATATCAATACCTTTGACTAATTGCTACATGAAAAACAAATAATCTCAAATTTGAAATGAGGCACAAAGATAGTATACATACGTCTTGCTTATAATACTATCCTCCTAAGTTCATCATAGGTAGTAGATATCTAACTTAACTCTTATACAATTTCGCTCTCTTACATCCGATTCAATGGTGCAAAACTACCAACCTCATTGTATCGGCCTCGTCAAATAATTACCCCCAAATTTGACCATAGTTTTGTCTCCAAGTTAACCCTATTTTTACAACAACAACAACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTACAAAAATGCTTCGATTTGGCAAAATAACCCCTAGATTGAGTTCCAAATTTCAACCTATCGGCCACTCTTCAATAGTGGGAGTGTAGCGACGGACAGGATCAGGTAAAAATGGCGGGTTTGCTCGCATGGGCGGCGGACGTCGTCGGCGGCGGCAGCGGAGTGAACCACGACGACGAACAGAGCACTTCGATTCCCATAATGTTTACTCCGGAGCAGCAGAAGTATGTTCGAGAATTGAATCAGAAAGCAGCTTCTCTCAGCCGCTCGATCCACGATCTGCGGCTTCGTTTGCCTCCTCCCGACATCTCCCAACGCCTTCCTCACCTTCATGCCCACTCTCTTGCGTCCACTGCCGATCTTACTCTTCAATTGAACGCCCACTCTTCCACTCGCGAACATGTTAGGCTTCTGATTCGTTTGTTTTTTTCTCATTTGGAGATATCGAATTGAGGGTCTAACGATCTCGGACTTTGATTCTTGGTTGTTATTATTTTCGACAAGTCTAAATGGTTTATTTTGCCTGAAAATTCAATAACTGCCATTAGATCCTGCATTGTTGAATATTTGTTGCTGTTCTGTTTTAGGATCGGTGCAAAAATGTTTCCTTTGGTGGAATATTTTCTTAGCTCGATGTTGTATTGGATCCCTATTTTTCAAGTGTCATTTTTCGTCGTTATTCGATGTTTACGCATTCATATGTCTATGTTTCGATTGATCTACGCTGGAATTTCAAGTTTGAAAAATAACCCGGCTGCCTCTGTGCAAGTGGCTCTAAGATCTGATGCATGGCCTGCATTGTAG

mRNA sequence

ATGGGAAATGAATTCAAGCCATCACTTGTTGTTGAATCTGATTCGCTCGAAGTCACTGGGGTTCTTAACCGCAAGATTGAGGACTTATCTGATCTATCGTTGATTGTAGAAGAGATCGAGGGGATTAGAGAGAGTGCCAACGTTATTTCCTTCGTCAAATCTTCGAGATCGAGGAGTGTGGAAGCTCACAATTTGGCGCGAGCAACAATCTCCTATGAGATTTTGATGGTTTTTTTGGGCATTTTTAGTTCCCGCTTTTTGGGGAAAGTGAATGCAATAGGGATGTTGTTATCCTTTTTTGAGTATATTCATTGGGAGTGTAGCGACGGACAGGATCAGGTAAAAATGGCGGGTTTGCTCGCATGGGCGGCGGACGTCGTCGGCGGCGGCAGCGGAGTGAACCACGACGACGAACAGAGCACTTCGATTCCCATAATGTTTACTCCGGAGCAGCAGAAGTATGTTCGAGAATTGAATCAGAAAGCAGCTTCTCTCAGCCGCTCGATCCACGATCTGCGGCTTCGTTTGCCTCCTCCCGACATCTCCCAACGCCTTCCTCACCTTCATGCCCACTCTCTTGCGTCCACTGCCGATCTTACTCTTCAATTGAACGCCCACTCTTCCACTCGCGAACATGTTAGGCTTCTGATTCGTTTGATCGGTGCAAAAATGTTTCCTTTGGTGGAATATTTTCTTAGCTCGATGTTGTATTGGATCCCTATTTTTCAAGTGTCATTTTTCGTCGTTATTCGATGTTTACGCATTCATATGTCTATGTTTCGATTGATCTACGCTGGAATTTCAAGTTTGAAAAATAACCCGGCTGCCTCTGTGCAAGTGGCTCTAAGATCTGATGCATGGCCTGCATTGTAG

Coding sequence (CDS)

ATGGGAAATGAATTCAAGCCATCACTTGTTGTTGAATCTGATTCGCTCGAAGTCACTGGGGTTCTTAACCGCAAGATTGAGGACTTATCTGATCTATCGTTGATTGTAGAAGAGATCGAGGGGATTAGAGAGAGTGCCAACGTTATTTCCTTCGTCAAATCTTCGAGATCGAGGAGTGTGGAAGCTCACAATTTGGCGCGAGCAACAATCTCCTATGAGATTTTGATGGTTTTTTTGGGCATTTTTAGTTCCCGCTTTTTGGGGAAAGTGAATGCAATAGGGATGTTGTTATCCTTTTTTGAGTATATTCATTGGGAGTGTAGCGACGGACAGGATCAGGTAAAAATGGCGGGTTTGCTCGCATGGGCGGCGGACGTCGTCGGCGGCGGCAGCGGAGTGAACCACGACGACGAACAGAGCACTTCGATTCCCATAATGTTTACTCCGGAGCAGCAGAAGTATGTTCGAGAATTGAATCAGAAAGCAGCTTCTCTCAGCCGCTCGATCCACGATCTGCGGCTTCGTTTGCCTCCTCCCGACATCTCCCAACGCCTTCCTCACCTTCATGCCCACTCTCTTGCGTCCACTGCCGATCTTACTCTTCAATTGAACGCCCACTCTTCCACTCGCGAACATGTTAGGCTTCTGATTCGTTTGATCGGTGCAAAAATGTTTCCTTTGGTGGAATATTTTCTTAGCTCGATGTTGTATTGGATCCCTATTTTTCAAGTGTCATTTTTCGTCGTTATTCGATGTTTACGCATTCATATGTCTATGTTTCGATTGATCTACGCTGGAATTTCAAGTTTGAAAAATAACCCGGCTGCCTCTGTGCAAGTGGCTCTAAGATCTGATGCATGGCCTGCATTGTAG

Protein sequence

MGNEFKPSLVVESDSLEVTGVLNRKIEDLSDLSLIVEEIEGIRESANVISFVKSSRSRSVEAHNLARATISYEILMVFLGIFSSRFLGKVNAIGMLLSFFEYIHWECSDGQDQVKMAGLLAWAADVVGGGSGVNHDDEQSTSIPIMFTPEQQKYVRELNQKAASLSRSIHDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREHVRLLIRLIGAKMFPLVEYFLSSMLYWIPIFQVSFFVVIRCLRIHMSMFRLIYAGISSLKNNPAASVQVALRSDAWPAL
Homology
BLAST of Lag0030825 vs. NCBI nr
Match: KAG6581169.1 (hypothetical protein SDJN03_21171, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017906.1 hypothetical protein SDJN02_19772, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.9 bits (455), Expect = 3.2e-41
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0

Query: 116 MAGLLAWAADVVGGGSGVNHDDEQSTSIPIMFTPEQQKYVRELNQKAASLSRSIHDLRLR 175
           MAGLLAWAADVVGGG+  NHDDEQ+TSIPI+FTPEQQKYVRELNQKAASLSRSI DLRLR
Sbjct: 1   MAGLLAWAADVVGGGA--NHDDEQTTSIPIIFTPEQQKYVRELNQKAASLSRSIRDLRLR 60

Query: 176 LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREHVRL 216
           LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTRE V+L
Sbjct: 61  LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREQVQL 98

BLAST of Lag0030825 vs. NCBI nr
Match: XP_023528196.1 (uncharacterized protein PFB0145c [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.9 bits (455), Expect = 3.2e-41
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0

Query: 116 MAGLLAWAADVVGGGSGVNHDDEQSTSIPIMFTPEQQKYVRELNQKAASLSRSIHDLRLR 175
           MAGLLAWAADVVGGG+  NHDDEQ+TSIPI+FTPEQQKYVRELNQKAASLSRSI DLRLR
Sbjct: 1   MAGLLAWAADVVGGGA--NHDDEQTTSIPIIFTPEQQKYVRELNQKAASLSRSIRDLRLR 60

Query: 176 LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREHVRL 216
           LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTRE V+L
Sbjct: 61  LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREQVQL 98

BLAST of Lag0030825 vs. NCBI nr
Match: XP_022935341.1 (uncharacterized protein PFB0145c [Cucurbita moschata])

HSP 1 Score: 179.9 bits (455), Expect = 3.2e-41
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0

Query: 116 MAGLLAWAADVVGGGSGVNHDDEQSTSIPIMFTPEQQKYVRELNQKAASLSRSIHDLRLR 175
           MAGLLAWAADVVGGG+  NHDDEQ+TSIPI+FTPEQQKYVRELNQKAASLSRSI DLRLR
Sbjct: 1   MAGLLAWAADVVGGGA--NHDDEQTTSIPIIFTPEQQKYVRELNQKAASLSRSIRDLRLR 60

Query: 176 LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREHVRL 216
           LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTRE V+L
Sbjct: 61  LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREQVQL 98

BLAST of Lag0030825 vs. NCBI nr
Match: XP_022983408.1 (rab11 family-interacting protein 3 [Cucurbita maxima])

HSP 1 Score: 178.3 bits (451), Expect = 9.3e-41
Identity = 91/100 (91.00%), Postives = 96/100 (96.00%), Query Frame = 0

Query: 116 MAGLLAWAADVVGGGSGVNHDDEQSTSIPIMFTPEQQKYVRELNQKAASLSRSIHDLRLR 175
           MAGLLAWAADVVGGG+  NHDDEQ+TSIPI+FTPEQQKYVRELNQKAASLSRSI DLRL+
Sbjct: 1   MAGLLAWAADVVGGGA--NHDDEQTTSIPIIFTPEQQKYVRELNQKAASLSRSIRDLRLQ 60

Query: 176 LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREHVRL 216
           LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTRE V+L
Sbjct: 61  LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREQVQL 98

BLAST of Lag0030825 vs. NCBI nr
Match: XP_038895964.1 (golgin subfamily A member 1 [Benincasa hispida])

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-40
Identity = 91/104 (87.50%), Postives = 95/104 (91.35%), Query Frame = 0

Query: 116 MAGLLAWAADVV--GGGSGVNHDDEQSTSIPIMFTPEQQKYVRELNQKAASLSRSIHDLR 175
           MAGLLAWAADVV  GGG G NHDDEQ TSIPI+FTPEQQ YVRELNQKAASLSRS+ DLR
Sbjct: 1   MAGLLAWAADVVGGGGGGGANHDDEQITSIPIIFTPEQQNYVRELNQKAASLSRSVRDLR 60

Query: 176 LRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREHVRLLI 218
           LRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTRE V+L +
Sbjct: 61  LRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREQVQLRV 104

BLAST of Lag0030825 vs. ExPASy TrEMBL
Match: A0A6J1F4A5 (uncharacterized protein PFB0145c OS=Cucurbita moschata OX=3662 GN=LOC111442254 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-41
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0

Query: 116 MAGLLAWAADVVGGGSGVNHDDEQSTSIPIMFTPEQQKYVRELNQKAASLSRSIHDLRLR 175
           MAGLLAWAADVVGGG+  NHDDEQ+TSIPI+FTPEQQKYVRELNQKAASLSRSI DLRLR
Sbjct: 1   MAGLLAWAADVVGGGA--NHDDEQTTSIPIIFTPEQQKYVRELNQKAASLSRSIRDLRLR 60

Query: 176 LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREHVRL 216
           LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTRE V+L
Sbjct: 61  LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREQVQL 98

BLAST of Lag0030825 vs. ExPASy TrEMBL
Match: A0A6J1J7P1 (rab11 family-interacting protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111482019 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.5e-41
Identity = 91/100 (91.00%), Postives = 96/100 (96.00%), Query Frame = 0

Query: 116 MAGLLAWAADVVGGGSGVNHDDEQSTSIPIMFTPEQQKYVRELNQKAASLSRSIHDLRLR 175
           MAGLLAWAADVVGGG+  NHDDEQ+TSIPI+FTPEQQKYVRELNQKAASLSRSI DLRL+
Sbjct: 1   MAGLLAWAADVVGGGA--NHDDEQTTSIPIIFTPEQQKYVRELNQKAASLSRSIRDLRLQ 60

Query: 176 LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREHVRL 216
           LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTRE V+L
Sbjct: 61  LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREQVQL 98

BLAST of Lag0030825 vs. ExPASy TrEMBL
Match: A0A5A7T417 (Centromere protein F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold86G00020 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 7.7e-41
Identity = 87/100 (87.00%), Postives = 94/100 (94.00%), Query Frame = 0

Query: 116 MAGLLAWAADVVGGGSGVNHDDEQSTSIPIMFTPEQQKYVRELNQKAASLSRSIHDLRLR 175
           MAGLL+WAADVV GG G NH+DE+STSIP++FTPEQQ YVRELNQKAASLSRS+ DLRLR
Sbjct: 1   MAGLLSWAADVVAGGGGANHNDERSTSIPLIFTPEQQNYVRELNQKAASLSRSVRDLRLR 60

Query: 176 LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREHVRL 216
           LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTRE V+L
Sbjct: 61  LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREQVQL 100

BLAST of Lag0030825 vs. ExPASy TrEMBL
Match: A0A1S3CFI4 (centromere protein F OS=Cucumis melo OX=3656 GN=LOC103500147 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 7.7e-41
Identity = 87/100 (87.00%), Postives = 94/100 (94.00%), Query Frame = 0

Query: 116 MAGLLAWAADVVGGGSGVNHDDEQSTSIPIMFTPEQQKYVRELNQKAASLSRSIHDLRLR 175
           MAGLL+WAADVV GG G NH+DE+STSIP++FTPEQQ YVRELNQKAASLSRS+ DLRLR
Sbjct: 1   MAGLLSWAADVVAGGGGANHNDERSTSIPLIFTPEQQNYVRELNQKAASLSRSVRDLRLR 60

Query: 176 LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREHVRL 216
           LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTRE V+L
Sbjct: 61  LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREQVQL 100

BLAST of Lag0030825 vs. ExPASy TrEMBL
Match: A0A0A0L9S6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G270290 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.9e-39
Identity = 86/101 (85.15%), Postives = 95/101 (94.06%), Query Frame = 0

Query: 116 MAGLLAWAADVV-GGGSGVNHDDEQSTSIPIMFTPEQQKYVRELNQKAASLSRSIHDLRL 175
           MAGLL+WAADVV GGG G NH+DE++TSIP++FTP+QQ YVRELNQKAASLSRS+ DLRL
Sbjct: 1   MAGLLSWAADVVAGGGGGANHNDERTTSIPLIFTPDQQNYVRELNQKAASLSRSVRDLRL 60

Query: 176 RLPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREHVRL 216
           RLPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTRE V+L
Sbjct: 61  RLPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREQVQL 101

BLAST of Lag0030825 vs. TAIR 10
Match: AT5G15880.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-30
Identity = 71/100 (71.00%), Postives = 81/100 (81.00%), Query Frame = 0

Query: 116 MAGLLAWAADVVGGGSGVNHDDEQSTSIPIMFTPEQQKYVRELNQKAASLSRSIHDLRLR 175
           MAGLLAWAADVV G +G   DDE+   IP++FT EQQKYV EL +KA +LSRSI DLRLR
Sbjct: 1   MAGLLAWAADVV-GKNGKEGDDEKD-RIPLVFTEEQQKYVDELGRKATNLSRSIQDLRLR 60

Query: 176 LPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREHVRL 216
           LPPPDISQRLP LHAHSLAS A LTLQL++HS+TRE   +
Sbjct: 61  LPPPDISQRLPDLHAHSLASNAALTLQLDSHSATREQAHM 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6581169.13.2e-4192.00hypothetical protein SDJN03_21171, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023528196.13.2e-4192.00uncharacterized protein PFB0145c [Cucurbita pepo subsp. pepo][more]
XP_022935341.13.2e-4192.00uncharacterized protein PFB0145c [Cucurbita moschata][more]
XP_022983408.19.3e-4191.00rab11 family-interacting protein 3 [Cucurbita maxima][more]
XP_038895964.11.2e-4087.50golgin subfamily A member 1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F4A51.6e-4192.00uncharacterized protein PFB0145c OS=Cucurbita moschata OX=3662 GN=LOC111442254 P... [more]
A0A6J1J7P14.5e-4191.00rab11 family-interacting protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111482019 P... [more]
A0A5A7T4177.7e-4187.00Centromere protein F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold86G... [more]
A0A1S3CFI47.7e-4187.00centromere protein F OS=Cucumis melo OX=3656 GN=LOC103500147 PE=4 SV=1[more]
A0A0A0L9S61.9e-3985.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G270290 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G15880.11.2e-3071.00unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 155..175
NoneNo IPR availablePANTHERPTHR37761OS09G0108400 PROTEINcoord: 116..215

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0030825.1Lag0030825.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane