Lag0029436 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029436
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	40S ribosomal protein S27
Location	chr8: 38997897 .. 38999510 (-)
RNA-Seq Expression	Lag0029436
Synteny	Lag0029436

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGTTCTCATTCCTCTTCTACTCAGATTTAATGTATTGTAACTTTTCGGCTTTCGTTTTCGATCTGTTTGTTTATTGAAAATTCTATGGCTGCAAAGTTGAATGTATTCATGTTTATTTTATTCTCCGTACTTTTTGTTTGAACACTTTCGAGTGTATGGATTCATGTTTGTAGGAAGATGATAGGAAGAATTGATACATTTGAAACCTCTGTTTTCGGGAAGACTTGTGGTTTTCTTTCTACTATTTTGTTTTTCCTTTCCAGATTTGATGATTAAGAGATGGATTTGTTCGTTCTCGAGCGATTGTTGAAAAAACATTTTATAACATGGGCGGAGAACGAAAAGGAATGTTTGTCGATTTAGAGTAGTGAAATATTTTTATTCCCCAACTCTTGGAGAAATACTGAAAACTTGCATTAAATTCAAAGGAATTATGCGCAAAACTTTGCACACTGGTGTTTACTTCTGACGCCCTGAAGTTGCTTGGAAGAGTCATTGTTTTTTTTTTCCAATTAGCAGGGAGCTTTAGTTTTATCTGTTGCCCTGAATTTATTTATAAGAATCTTCTACTGTTTTTCTTTTTTCCAACTTGCCGCTGTTTTATTTTTATCTAGTCTCATGCAATTGAAAGGACCATTGCACAATTATTCGTACTTTGACGAAGAAGAAACCTTTTTTTTATATAATTTTTTAAACTTCTTTTCATCATATTATCTTAAGTTATTTAAACGTGTCTCATGTGTCATTAACATGTTTGATTTTTTTTTTAAACACGAAGTTAAATATTGAAGAAATTCAAATGCATGTTCGAGCATGTTGACATCTTAGAAGAGCAAAACCCAGTGCAATACTCTAAATAGTGTCTATGCTTCCTAATGTAGCACTAATTTTTGCTGATTTTGTTGACTTGTTGTACTCCATTTCTTGTCATATTCAATTCCTTTTTCCTCGTTGCAATGTTTTGGTCTAAAAAATATGTTTCAGGTTCGTATCTTTGGTGTTGTTTAAATGGGATGTGTTGTTTTTTCCCCTAATAGGTTCTCCAAAACGATATTGATTTGCTGAATCCACCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCGCCCAACTCCTTCTTCATGGTATACCTTTTCTTCTATTTCAACAACTCCTTTCCATTCGGTTTTATTGTCTTGTTAATTTAGCACATCAAATTTTAATTATTGAGGCTCCTCTCATAGAAGCATACAGAAGGCAAGCTGTTAATGTTTCCGTTTTAGCCTTGATTTATATGATATTCTGACAAGTTTTGCCTTTAATTGTTGTGTTTTGTTGATGCGAAGGACGTCAAGTGCCAGGGTTGCTTCAACATGTAAGTGCCATCACTTTTCATCAGTTGTTGTTTTGCAATTCATCTGGGTTCTGCATTAAGCTGTTGTGTATTGAAATTTTCTGATTTTTTTTTTTTTGTCAATGAAATGCAGTACCACTGTCTTCAGCCACTCTCAAACTGTCGTGGTATGCGGTAACTGCCAGACAGTCTTGTGCCAGCCAACTGGAGGACGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGTGATTGA

mRNA sequence

ATGGTTCTCCAAAACGATATTGATTTGCTGAATCCACCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCGCCCAACTCCTTCTTCATGGACGTCAAGTGCCAGGGTTGCTTCAACATTACCACTGTCTTCAGCCACTCTCAAACTGTCGTGGTATGCGGTAACTGCCAGACAGTCTTGTGCCAGCCAACTGGAGGACGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGTGATTGA

Coding sequence (CDS)

ATGGTTCTCCAAAACGATATTGATTTGCTGAATCCACCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCGCCCAACTCCTTCTTCATGGACGTCAAGTGCCAGGGTTGCTTCAACATTACCACTGTCTTCAGCCACTCTCAAACTGTCGTGGTATGCGGTAACTGCCAGACAGTCTTGTGCCAGCCAACTGGAGGACGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGTGATTGA

Protein sequence

MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Homology

[Close]

BLAST of Lag0029436 vs. NCBI nr
Match: XP_022991567.1 (40S ribosomal protein S27-2-like [Cucurbita maxima])

HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 64  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 123

Query: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 87
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 124 CQTVLCQPTGGRARLTEGCSFRRKGD 149

[Close]

BLAST of Lag0029436 vs. NCBI nr
Match: XP_022953224.1 (uncharacterized protein LOC111455834 [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 124 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 183

Query: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 87
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 184 CQTVLCQPTGGRARLTEGCSFRRKGD 209

[Close]

BLAST of Lag0029436 vs. NCBI nr
Match: XP_002512685.1 (40S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal protein S27-2 [Ricinus communis] >XP_004143769.1 40S ribosomal protein S27-2 [Cucumis sativus] >XP_008465377.1 PREDICTED: 40S ribosomal protein S27-2-like [Cucumis melo] >XP_010028919.1 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_010057712.1 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_012078870.1 40S ribosomal protein S27-2 [Jatropha curcas] >XP_018829355.1 40S ribosomal protein S27-2 [Juglans regia] >XP_021660002.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_021680473.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_022141357.1 40S ribosomal protein S27-2 [Momordica charantia] >XP_022939288.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022952540.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022990942.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_022993712.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_023524061.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023548719.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023549571.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023872417.1 40S ribosomal protein S27-2 [Quercus suber] >XP_030450730.1 40S ribosomal protein S27-2 [Syzygium oleosum] >XP_030452017.1 40S ribosomal protein S27-2 [Syzygium oleosum] >XP_030513362.1 40S ribosomal protein S27-2 [Rhodamnia argentea] >XP_030956657.1 40S ribosomal protein S27-2 [Quercus lobata] >XP_031276672.1 40S ribosomal protein S27-2 [Pistacia vera] >XP_031276714.1 40S ribosomal protein S27-2 [Pistacia vera] >XP_038906694.1 40S ribosomal protein S27-2-like [Benincasa hispida] >XP_041012643.1 40S ribosomal protein S27-2 [Juglans microcarpa x Juglans regia] >XP_042982589.1 40S ribosomal protein S27-2 [Carya illinoinensis] >KAA0066103.1 Ribosomal protein S27e [Cucumis melo var. makuwa] >KAF3943728.1 hypothetical protein CMV_029739 [Castanea mollissima] >KAF8013305.1 hypothetical protein BT93_I1220 [Corymbia citriodora subsp. variegata] >KAG6579093.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014613.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Lag0029436 vs. NCBI nr
Match: KAF5449188.1 (hypothetical protein F2P56_029664, partial [Juglans regia])

HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 29  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 88

Query: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 87
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 89  CQTVLCQPTGGRARLTEGCSFRRKGD 114

[Close]

BLAST of Lag0029436 vs. NCBI nr
Match: XP_031384267.1 (40S ribosomal protein S27-2 [Punica granatum])

HSP 1 Score: 181.8 bits (460), Expect = 2.5e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQND+DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDVDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Lag0029436 vs. ExPASy Swiss-Prot
Match: Q9M2F1 (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 1.6e-44
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Lag0029436 vs. ExPASy Swiss-Prot
Match: Q96564 (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 170.6 bits (431), Expect = 7.6e-42
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1  MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGG+ARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of Lag0029436 vs. ExPASy Swiss-Prot
Match: O64650 (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.7e-41
Identity = 78/84 (92.86%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRK 85
          CQT+LC PTGG+A+LTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Lag0029436 vs. ExPASy Swiss-Prot
Match: Q8L953 (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 2.2e-41
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRK 85
          CQTVLCQPTGG+ARL EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Lag0029436 vs. ExPASy Swiss-Prot
Match: P47903 (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.3e-37
Identity = 73/86 (84.88%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1  MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          C +VLC PTG   RLTEGCSFRRK D
Sbjct: 61 CSSVLCTPTGWPRRLTEGCSFRRKSD 86

The following BLAST results are available for this feature:

BLAST of Lag0029436 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991567.1	1.9e-42	100.00	40S ribosomal protein S27-2-like [Cucurbita maxima]	[more]
XP_022953224.1	1.9e-42	100.00	uncharacterized protein LOC111455834 [Cucurbita moschata]	[more]
XP_002512685.1	1.9e-42	100.00	40S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal pro...	[more]
KAF5449188.1	1.9e-42	100.00	hypothetical protein F2P56_029664, partial [Juglans regia]	[more]
XP_031384267.1	2.5e-42	98.84	40S ribosomal protein S27-2 [Punica granatum]	[more]

BLAST of Lag0029436 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2F1	1.6e-44	96.51	40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2	[more]
Q96564	7.6e-42	94.19	40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2	[more]
O64650	1.7e-41	92.86	40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1	[more]
Q8L953	2.2e-41	94.05	40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2	[more]
P47903	4.3e-37	84.88	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023407	Ribosomal protein S27, zinc-binding domain superfamily	GENE3D	2.20.25.100		coord: 5..85 e-value: 1.3E-49 score: 168.0
IPR000592	Ribosomal protein S27	PFAM	PF01667	Ribosomal_S27e	coord: 30..84 e-value: 2.2E-27 score: 94.5
IPR000592	Ribosomal protein S27	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 2..85
IPR000592	Ribosomal protein S27	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 38..70
IPR000592	Ribosomal protein S27	HAMAP	MF_00371	Ribosomal_S27e	coord: 24..84 score: 16.744337
None	No IPR available	PANTHER	PTHR11594:SF7	40S RIBOSOMAL PROTEIN S27-RELATED	coord: 2..85
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 30..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029436.1	Lag0029436.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome