Lag0029219 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029219
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	40S ribosomal protein S8
Location	chr8: 36594657 .. 36597555 (+)
RNA-Seq Expression	Lag0029219
Synteny	Lag0029219

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGCACGTTGGTCTCCCCATCCTAATGATTATTGGAAGATGATTTTGGATGCTGCTTGGATTTTATCTCCTCCATCAACGGGTATCGGTGTTATTTGCAGAAATTCTAATGGTCGCATCATCAGTGCCTTATCTCGTTATCTTGATATGGAATTCGAGGTTCCAGTTGTTGAGATCAAGGCTATTTTTTGGAGAGTATCAATTTGGCCATTTCCTTGGGATGTTGGAAGTTGATAATGGAATCTGACTGTGTTGTGGCGATCAATTTTATTCTTAAGAAATCATAAGTCTAGAGTAAATGTAGAGTAAATGTGGAAGTGCTCGTTGGGAGGGTTGGGAGTATCTTGACTTTATTACCAAATTTTAGTGAAGGTTCCCTTCCTCTATGTTCATGGGAATTGTAATAGGGTTGCATATGGTATTGTTAAACGAGCTAGAATGTTGGAACTTAGTGATTCCTAGGTTGAGTGTATCCCATATTCGATTTGTACATTGGTCGATTATGAACGGTCTTATGTTGCTCATGTGGCATTATAATATTCCTTTTATTAATTAAAAAAAAACAGTCCAACGAATAAAACTCATCGAACATCTAATAAATTTAAACTATAATGTAATTGTATTTATCATTATACGATTTTCCAAAATCTTTCATTGTCCATCGAAATTAAGAAGAACGAAAACTAGATAAGAGAAATGTAAAATTGAGGCTCTAAAAATATTGGGTTCCGTTCCTTTCCTGTTCGGACAAATGTGGAGAGAGCATCTGATTTTAAATTATTCACCTTCTTTTAAAAAATAAATAATAATATATAATTTAATTAGTAAATTTTGTTTCCTTTCAGAAAATATTATTACCATTCAACGAGAAACATGAATGGACCCATCTTCCAGCCTTGCCCAGCCCATTTAACTAGTTATTCGGCCCATCTTTAAGCCCACAATAGCACTGCAATCGACTTGAAACCCTAATTTATATTTCATCTCCTTCCTCCAACCTCACTCCTATTGCCTTCTGCTGTGCGCCCAACCTTACCGCCGCCGCCCGCCGATCGGCTGCTGCCGTCCACGGTGAGTATCTTGCCCCATTCTTCTACACTTCCCGCACATCTCTCTCTCTATCATCCTCTTTCATGCCTGTCTCTCTCATTCTTTTTCTATATTTCACGTTTGCCCTTGAAAAAGGCTTAGGGTTTGAGCGTTGTCTACTGTTTCTGTCGTTGTTTGTCATAGGTTGCATCAGGAACCTTAGAACTCCTGTTCGCGCAGGAGCTCCCATCTCGTCAACATGGGTAAGTTACATTCGGATATCCAGATTGTTATACGTATCTCCATTTGTGTGCTTGTTTTTCTGTTTTTTTTTTTTAATAGTGGAGGGCTTTGTGATTAGGTATCTCTCGTGATTCTATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTAACCATCTCTGCTTGTATTCATTTGAGTGCAATTTGATTGACCAGTTTTTTCTCCATTTCCCACAATTAGTTGCTAACTGGCCCGCAAAATAATTCATGTTTTTATTCATTTATTTCTGTGATTTCCAGTACAGACGGGGTGATTTTGGAGGATTAGCTGGAAAATTTATTTTTTATTGGGTAGTTGTCAGATATTGTCTAGGGTTTTTCTGTTGTTTTCTTTTCCATCATATATTTCATTAAGTTTAATTAATATGCATTAGGTATCTCATCTCATCTGATAGATCGATGCGTCTTCTTGTCTGAGTAGATTATTAGTCGCTTGTAACGTGTTCACATTTGCATATTTAATGAACGGTGCAATTGTAATTTCTCCTATTGACGTAGTAATGTAGCCTTTTCCAATATTTGTGTTATTGCGTAGTTCAGTTCTATAAATATTTTTTTTGCATAATTAGAAATACAACCTTCTTGACCATGGATTGATGAGCTCTTCACACAACTTTCATTTGGCGTGTGTTGTTTTTGAAATCCTCTTAATATTGTTTCTTTGTAAAGGTATGAGCTCGGAAGGCAACCTGCCAACACTAAGCTATCCAGTGACAAGTCAATCAGGAGGGTTAGAGTTCGTGGGGGTAATGTGAAGTGGCGTGCTTTTAGACTTGATACTGGAAACTACTCATGGGGTAGCGAGGCCGTGACTAGGAAGACACGTATTCTTGATGTGGTGTACAATGCATCTAACAACGAGCTTGTTCGTACTCAAACTTTGGTGAAAAGTGCCATTGTCCAGGTTGATGCTGCACCATTTAAGCAGTGGTATCTTCAGCACTACGGAGTGGATATTGGACGGAAGAAGAAGACTGCTGCAGCTGCTAAGAAGGAAGAGGTAGGGCAAGTTTTGTAGATTATTGGGTTCATTCTAATTTCAAGTATGAGTTTATAATGTGTTAAAAATATAAAGTCTGATGTATGAAGATGATGACATTCATAATTAGCACGGACTGTCTAGACCATTACCAGTAAGATAACTTGGTTTTTACGGTTGATAGGAAGGTGATGCTGCTGCTCCTGCTGAGGAAGCGAAGAAGAGTAACCACGTCCAGCGCAAGCTCGAGAAACGTCAACAGGATCGCAAGCTTGACCCACACATTGAAGAGCAATTCAGCAGTGGTCGTTTGATGGCTTGTATTTCATCAAGGCCAGGTCAATGTGGTCGAGCAGACGGGTAAGCAATGTTACCCTTTACGATTCTGTTTTCTTTTTCTTGTGTTCTTTCCAACTTTTTTAGCACACTCATTGAAGGATTTTCTGAGTACATTTGCTGAGGTTTTGCAAACTTTTGACAGATACATCTTGGAGGGCAAAGAACTTGAGTTCTACATGAAGAAGCTCCAGAGAAAGAAGGGAAAAGGTGCAGGTGCTGCATAA

mRNA sequence

ATGTGTGCACGTTGGTCTCCCCATCCTAATGATTATTGGAAGATGATTTTGGATGCTGCTTGGATTTTATCTCCTCCATCAACGGGTATCGGTGTTATTTGCAGAAATTCTAATGGTCGCATCATCAGTGCCTTATCTCGTTATCTTGATATGGAATTCGAGGTTGCATCAGGAACCTTAGAACTCCTGTTCGCGCAGGAGCTCCCATCTCGTCAACATGGGTATGAGCTCGGAAGGCAACCTGCCAACACTAAGCTATCCAGTGACAAGTCAATCAGGAGGGTTAGAGTTCGTGGGGGTAATGTGAAGTGGCGTGCTTTTAGACTTGATACTGGAAACTACTCATGGGGTAGCGAGGCCGTGACTAGGAAGACACGTATTCTTGATGTGGTGTACAATGCATCTAACAACGAGCTTGTTCGTACTCAAACTTTGGTGAAAAGTGCCATTGTCCAGGTTGATGCTGCACCATTTAAGCAGTGGTATCTTCAGCACTACGGAGTGGATATTGGACGGAAGAAGAAGACTGCTGCAGCTGCTAAGAAGGAAGAGGAAGGTGATGCTGCTGCTCCTGCTGAGGAAGCGAAGAAGAGTAACCACGTCCAGCGCAAGCTCGAGAAACGTCAACAGGATCGCAAGCTTGACCCACACATTGAAGAGCAATTCAGCAGTGGTCGTTTGATGGCTTGTATTTCATCAAGGCCAGGTCAATGTGGTCGAGCAGACGGATACATCTTGGAGGGCAAAGAACTTGAGTTCTACATGAAGAAGCTCCAGAGAAAGAAGGGAAAAGGTGCAGGTGCTGCATAA

Coding sequence (CDS)

ATGTGTGCACGTTGGTCTCCCCATCCTAATGATTATTGGAAGATGATTTTGGATGCTGCTTGGATTTTATCTCCTCCATCAACGGGTATCGGTGTTATTTGCAGAAATTCTAATGGTCGCATCATCAGTGCCTTATCTCGTTATCTTGATATGGAATTCGAGGTTGCATCAGGAACCTTAGAACTCCTGTTCGCGCAGGAGCTCCCATCTCGTCAACATGGGTATGAGCTCGGAAGGCAACCTGCCAACACTAAGCTATCCAGTGACAAGTCAATCAGGAGGGTTAGAGTTCGTGGGGGTAATGTGAAGTGGCGTGCTTTTAGACTTGATACTGGAAACTACTCATGGGGTAGCGAGGCCGTGACTAGGAAGACACGTATTCTTGATGTGGTGTACAATGCATCTAACAACGAGCTTGTTCGTACTCAAACTTTGGTGAAAAGTGCCATTGTCCAGGTTGATGCTGCACCATTTAAGCAGTGGTATCTTCAGCACTACGGAGTGGATATTGGACGGAAGAAGAAGACTGCTGCAGCTGCTAAGAAGGAAGAGGAAGGTGATGCTGCTGCTCCTGCTGAGGAAGCGAAGAAGAGTAACCACGTCCAGCGCAAGCTCGAGAAACGTCAACAGGATCGCAAGCTTGACCCACACATTGAAGAGCAATTCAGCAGTGGTCGTTTGATGGCTTGTATTTCATCAAGGCCAGGTCAATGTGGTCGAGCAGACGGATACATCTTGGAGGGCAAAGAACTTGAGTTCTACATGAAGAAGCTCCAGAGAAAGAAGGGAAAAGGTGCAGGTGCTGCATAA

Protein sequence

MCARWSPHPNDYWKMILDAAWILSPPSTGIGVICRNSNGRIISALSRYLDMEFEVASGTLELLFAQELPSRQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEEGDAAAPAEEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA

Homology

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BLAST of Lag0029219 vs. NCBI nr
Match: XP_022939829.1 (40S ribosomal protein S8 [Cucurbita moschata] >XP_022993929.1 40S ribosomal protein S8 [Cucurbita maxima])

HSP 1 Score: 374.8 bits (961), Expect = 6.3e-100
Identity = 189/199 (94.97%), Postives = 195/199 (97.99%), Query Frame = 0


Query: 71  RQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 130
           ++  YELGRQPANTK+SSDKSIRR+RVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV
Sbjct: 23  KKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 82

Query: 131 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEEGDAAA 190
           VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAA+AKKEEEGDAAA
Sbjct: 83  VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAASAKKEEEGDAAA 142

Query: 191 PAEEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 250
             EEAKKSNHVQRKLEKRQQ+RKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE
Sbjct: 143 ATEEAKKSNHVQRKLEKRQQERKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 202

Query: 251 LEFYMKKLQRKKGKGAGAA 270
           LEFYMKKLQRKKGKGAGAA
Sbjct: 203 LEFYMKKLQRKKGKGAGAA 221

[Close]

BLAST of Lag0029219 vs. NCBI nr
Match: KAG7016478.1 (40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 373.2 bits (957), Expect = 1.8e-99
Identity = 188/195 (96.41%), Postives = 193/195 (98.97%), Query Frame = 0


Query: 75  YELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDVVYNA 134
           YELGRQPANTK+SSDKSIRR+RVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDVVYNA
Sbjct: 84  YELGRQPANTKISSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDVVYNA 143

Query: 135 SNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEEGDAAAPAEE 194
           SNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAA+AKKEE+GDAAA  EE
Sbjct: 144 SNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAASAKKEEDGDAAAATEE 203

Query: 195 AKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKELEFY 254
           AKKSNHVQRKLEKRQQ+RKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKELEFY
Sbjct: 204 AKKSNHVQRKLEKRQQERKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKELEFY 263

Query: 255 MKKLQRKKGKGAGAA 270
           MKKLQRKKGKGAGAA
Sbjct: 264 MKKLQRKKGKGAGAA 278

[Close]

BLAST of Lag0029219 vs. NCBI nr
Match: XP_022957602.1 (40S ribosomal protein S8-like [Cucurbita moschata] >XP_022989999.1 40S ribosomal protein S8-like [Cucurbita maxima] >XP_023515358.1 40S ribosomal protein S8-like [Cucurbita pepo subsp. pepo] >KAG6602108.1 40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032811.1 40S ribosomal protein S8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 372.5 bits (955), Expect = 3.1e-99
Identity = 188/199 (94.47%), Postives = 194/199 (97.49%), Query Frame = 0


Query: 71  RQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 130
           ++  YELGRQPANTK+SSDKSIRR+RVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV
Sbjct: 23  KKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 82

Query: 131 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEEGDAAA 190
           VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKT+A AKKEEEG+AAA
Sbjct: 83  VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTSAPAKKEEEGEAAA 142

Query: 191 PAEEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 250
            AEE KKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE
Sbjct: 143 AAEELKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 202

Query: 251 LEFYMKKLQRKKGKGAGAA 270
           LEFYMKKLQRKKGKGAGAA
Sbjct: 203 LEFYMKKLQRKKGKGAGAA 221

[Close]

BLAST of Lag0029219 vs. NCBI nr
Match: KAG6578955.1 (40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 372.1 bits (954), Expect = 4.1e-99
Identity = 187/199 (93.97%), Postives = 194/199 (97.49%), Query Frame = 0


Query: 71  RQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 130
           ++  YELGRQPANTK+SSDKSIRR+RVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV
Sbjct: 23  KKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 82

Query: 131 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEEGDAAA 190
           VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAA+AKKEE+GDAAA
Sbjct: 83  VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAASAKKEEDGDAAA 142

Query: 191 PAEEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 250
             EE KKSNHVQRKLEKRQQ+RKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE
Sbjct: 143 ATEEVKKSNHVQRKLEKRQQERKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 202

Query: 251 LEFYMKKLQRKKGKGAGAA 270
           LEFYMKKLQRKKGKGAGAA
Sbjct: 203 LEFYMKKLQRKKGKGAGAA 221

[Close]

BLAST of Lag0029219 vs. NCBI nr
Match: XP_023550698.1 (40S ribosomal protein S8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 370.9 bits (951), Expect = 9.1e-99
Identity = 190/202 (94.06%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 71  RQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 130
           ++  YELGRQPANTK+SSDKSIRR+RVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV
Sbjct: 23  KKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 82

Query: 131 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEEGDAAA 190
           VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAA+AKKEEEGDAAA
Sbjct: 83  VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAASAKKEEEGDAAA 142

Query: 191 PA---EEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILE 250
            A   EEAKKSNHVQRKLEKRQQ+RKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILE
Sbjct: 143 AAAATEEAKKSNHVQRKLEKRQQERKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILE 202

Query: 251 GKELEFYMKKLQRKKGKGAGAA 270
           GKELEFYMKKLQRKKGKGAGAA
Sbjct: 203 GKELEFYMKKLQRKKGKGAGAA 224

[Close]

BLAST of Lag0029219 vs. ExPASy Swiss-Prot
Match: P49199 (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS8 PE=2 SV=2)

HSP 1 Score: 335.1 bits (858), Expect = 7.3e-91
Identity = 172/198 (86.87%), Postives = 178/198 (89.90%), Query Frame = 0


Query: 71  RQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 130
           ++  YELGRQPANTKLSS+K++RRVRVRGGNVKWRA RLDTGNYSWGSEAVTRKTRILDV
Sbjct: 23  KKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDV 82

Query: 131 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEEGDAAA 190
           VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGRKKK  AA K  E  DA A
Sbjct: 83  VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEGQDAEA 142

Query: 191 PAEEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 250
             EEAKKSNHV RKLEKRQQ R LD HIEEQF SGRL+ACISSRPGQCGRADGYILEGKE
Sbjct: 143 TTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKE 202

Query: 251 LEFYMKKLQRKKGKGAGA 269
           LEFYMKKLQRKKGKGA A
Sbjct: 203 LEFYMKKLQRKKGKGASA 220

[Close]

BLAST of Lag0029219 vs. ExPASy Swiss-Prot
Match: Q08069 (40S ribosomal protein S8 OS=Zea mays OX=4577 GN=RPS8 PE=2 SV=2)

HSP 1 Score: 330.5 bits (846), Expect = 1.8e-89
Identity = 170/199 (85.43%), Postives = 179/199 (89.95%), Query Frame = 0


Query: 71  RQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 130
           ++  YELGRQPANTKLSS+K++RRVRVRGGNVKWRA RLDTGNYSWGSEAVTRKTRILDV
Sbjct: 23  KKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDV 82

Query: 131 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEEG-DAA 190
           VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGRKKKT AA K   EG +  
Sbjct: 83  VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVE 142

Query: 191 APAEEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGK 250
           A AEE KKSNHV RKLEKR++ R LDPHIEEQF SGRL+ACISSRPGQCGRADGYILEGK
Sbjct: 143 AAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGK 202

Query: 251 ELEFYMKKLQRKKGKGAGA 269
           ELEFYMKKLQRKKGK A A
Sbjct: 203 ELEFYMKKLQRKKGKSAVA 221

[Close]

BLAST of Lag0029219 vs. ExPASy Swiss-Prot
Match: O81361 (40S ribosomal protein S8 OS=Prunus armeniaca OX=36596 GN=RPS8 PE=2 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 9.8e-88
Identity = 166/199 (83.42%), Postives = 180/199 (90.45%), Query Frame = 0


Query: 71  RQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 130
           ++  YELGRQPANTKLSS+K++RR+RVRGGNVKWRA RLDTGN+SWGSEAVTRKTR+LDV
Sbjct: 23  KKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDV 82

Query: 131 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEEGDAAA 190
           VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV+IGRKKKT AAAKK+   +  A
Sbjct: 83  VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKT-AAAKKDTPEEGEA 142

Query: 191 PAEEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 250
             EEAKKSNHV  KLEKRQQ R LD HIEEQF  G+L+ACISSRPGQCG+ADG ILEGKE
Sbjct: 143 TTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKE 202

Query: 251 LEFYMKKLQRKKGKGAGAA 270
           LEFYMKKLQRKKGKGAGAA
Sbjct: 203 LEFYMKKLQRKKGKGAGAA 220

[Close]

BLAST of Lag0029219 vs. ExPASy Swiss-Prot
Match: Q93VG5 (40S ribosomal protein S8-1 OS=Arabidopsis thaliana OX=3702 GN=RPS8A PE=1 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 6.0e-85
Identity = 157/199 (78.89%), Postives = 181/199 (90.95%), Query Frame = 0


Query: 71  RQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 130
           ++  YE+GRQPANTKLSS+K++RR+RVRGGNVKWRA RLDTGNYSWGSEA TRKTR+LDV
Sbjct: 23  KKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDV 82

Query: 131 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKE-EEGDAA 190
           VYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV++GRKKK+A++ KK+ EEG+ A
Sbjct: 83  VYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEA 142

Query: 191 APA--EEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILE 250
           A A  EE KKSNH+ RK+  RQ+ R LD HIE+QF+SGRL+ACISSRPGQCGRADGYILE
Sbjct: 143 AVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILE 202

Query: 251 GKELEFYMKKLQRKKGKGA 267
           GKELEFYMKK+Q+KKGKGA
Sbjct: 203 GKELEFYMKKIQKKKGKGA 221

[Close]

BLAST of Lag0029219 vs. ExPASy Swiss-Prot
Match: Q9FIF3 (40S ribosomal protein S8-2 OS=Arabidopsis thaliana OX=3702 GN=RPS8B PE=2 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 3.0e-84
Identity = 161/204 (78.92%), Postives = 175/204 (85.78%), Query Frame = 0


Query: 66  QELPSRQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKT 125
           Q++  ++  YELGRQPANTKLSS+K++RR+RVRGGNVKWRA RLDTGN+SWGSEAVTRKT
Sbjct: 18  QKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKT 77

Query: 126 RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEE 185
           RILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGVDIGRKKK          
Sbjct: 78  RILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKK---------- 137

Query: 186 GDAAAPAEEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYI 245
              A   EE KKSNHVQRKLE RQ+ R LD H+EEQFSSGRL+ACI+SRPGQCGRADGYI
Sbjct: 138 -GEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYI 197

Query: 246 LEGKELEFYMKKLQRKKGKGAGAA 270
           LEGKELEFYMKKLQ+KKGK AGAA
Sbjct: 198 LEGKELEFYMKKLQKKKGKNAGAA 210

[Close]

BLAST of Lag0029219 vs. ExPASy TrEMBL
Match: A0A6J1K1I2 (40S ribosomal protein S8 OS=Cucurbita maxima OX=3661 GN=LOC111489780 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 3.1e-100
Identity = 189/199 (94.97%), Postives = 195/199 (97.99%), Query Frame = 0


Query: 71  RQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 130
           ++  YELGRQPANTK+SSDKSIRR+RVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV
Sbjct: 23  KKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 82

Query: 131 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEEGDAAA 190
           VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAA+AKKEEEGDAAA
Sbjct: 83  VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAASAKKEEEGDAAA 142

Query: 191 PAEEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 250
             EEAKKSNHVQRKLEKRQQ+RKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE
Sbjct: 143 ATEEAKKSNHVQRKLEKRQQERKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 202

Query: 251 LEFYMKKLQRKKGKGAGAA 270
           LEFYMKKLQRKKGKGAGAA
Sbjct: 203 LEFYMKKLQRKKGKGAGAA 221

[Close]

BLAST of Lag0029219 vs. ExPASy TrEMBL
Match: A0A6J1FIB1 (40S ribosomal protein S8 OS=Cucurbita moschata OX=3662 GN=LOC111445587 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 3.1e-100
Identity = 189/199 (94.97%), Postives = 195/199 (97.99%), Query Frame = 0


Query: 71  RQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 130
           ++  YELGRQPANTK+SSDKSIRR+RVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV
Sbjct: 23  KKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 82

Query: 131 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEEGDAAA 190
           VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAA+AKKEEEGDAAA
Sbjct: 83  VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAASAKKEEEGDAAA 142

Query: 191 PAEEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 250
             EEAKKSNHVQRKLEKRQQ+RKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE
Sbjct: 143 ATEEAKKSNHVQRKLEKRQQERKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 202

Query: 251 LEFYMKKLQRKKGKGAGAA 270
           LEFYMKKLQRKKGKGAGAA
Sbjct: 203 LEFYMKKLQRKKGKGAGAA 221

[Close]

BLAST of Lag0029219 vs. ExPASy TrEMBL
Match: A0A6J1JQW0 (40S ribosomal protein S8 OS=Cucurbita maxima OX=3661 GN=LOC111487026 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.5e-99
Identity = 188/199 (94.47%), Postives = 194/199 (97.49%), Query Frame = 0


Query: 71  RQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 130
           ++  YELGRQPANTK+SSDKSIRR+RVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV
Sbjct: 23  KKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 82

Query: 131 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEEGDAAA 190
           VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKT+A AKKEEEG+AAA
Sbjct: 83  VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTSAPAKKEEEGEAAA 142

Query: 191 PAEEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 250
            AEE KKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE
Sbjct: 143 AAEELKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 202

Query: 251 LEFYMKKLQRKKGKGAGAA 270
           LEFYMKKLQRKKGKGAGAA
Sbjct: 203 LEFYMKKLQRKKGKGAGAA 221

[Close]

BLAST of Lag0029219 vs. ExPASy TrEMBL
Match: A0A6J1GZK4 (40S ribosomal protein S8 OS=Cucurbita moschata OX=3662 GN=LOC111459010 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.5e-99
Identity = 188/199 (94.47%), Postives = 194/199 (97.49%), Query Frame = 0


Query: 71  RQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 130
           ++  YELGRQPANTK+SSDKSIRR+RVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV
Sbjct: 23  KKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 82

Query: 131 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEEGDAAA 190
           VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKT+A AKKEEEG+AAA
Sbjct: 83  VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTSAPAKKEEEGEAAA 142

Query: 191 PAEEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 250
            AEE KKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE
Sbjct: 143 AAEELKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 202

Query: 251 LEFYMKKLQRKKGKGAGAA 270
           LEFYMKKLQRKKGKGAGAA
Sbjct: 203 LEFYMKKLQRKKGKGAGAA 221

[Close]

BLAST of Lag0029219 vs. ExPASy TrEMBL
Match: A0A6J1CVC9 (40S ribosomal protein S8 OS=Momordica charantia OX=3673 GN=LOC111014721 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 6.4e-98
Identity = 187/199 (93.97%), Postives = 194/199 (97.49%), Query Frame = 0


Query: 71  RQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 130
           ++  YELGRQPANTKLSSDKSIRR+RVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV
Sbjct: 23  KKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 82

Query: 131 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEEGDAAA 190
           VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKT+A+AKKEEEGD  A
Sbjct: 83  VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTSASAKKEEEGD--A 142

Query: 191 PAEEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 250
           P+EEAKKSNHVQRKLEKRQQ+RKLD HIEEQFSSGRLMACISSRPGQCGRADGYILEGKE
Sbjct: 143 PSEEAKKSNHVQRKLEKRQQERKLDAHIEEQFSSGRLMACISSRPGQCGRADGYILEGKE 202

Query: 251 LEFYMKKLQRKKGKGAGAA 270
           LEFYMKKLQRKKGKGAGAA
Sbjct: 203 LEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of Lag0029219 vs. TAIR 10
Match: AT5G20290.1 (Ribosomal protein S8e family protein )

HSP 1 Score: 315.5 bits (807), Expect = 4.2e-86
Identity = 157/199 (78.89%), Postives = 181/199 (90.95%), Query Frame = 0


Query: 71  RQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDV 130
           ++  YE+GRQPANTKLSS+K++RR+RVRGGNVKWRA RLDTGNYSWGSEA TRKTR+LDV
Sbjct: 23  KKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDV 82

Query: 131 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKE-EEGDAA 190
           VYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV++GRKKK+A++ KK+ EEG+ A
Sbjct: 83  VYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEA 142

Query: 191 APA--EEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILE 250
           A A  EE KKSNH+ RK+  RQ+ R LD HIE+QF+SGRL+ACISSRPGQCGRADGYILE
Sbjct: 143 AVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILE 202

Query: 251 GKELEFYMKKLQRKKGKGA 267
           GKELEFYMKK+Q+KKGKGA
Sbjct: 203 GKELEFYMKKIQKKKGKGA 221

[Close]

BLAST of Lag0029219 vs. TAIR 10
Match: AT5G59240.1 (Ribosomal protein S8e family protein )

HSP 1 Score: 313.2 bits (801), Expect = 2.1e-85
Identity = 161/204 (78.92%), Postives = 175/204 (85.78%), Query Frame = 0


Query: 66  QELPSRQHGYELGRQPANTKLSSDKSIRRVRVRGGNVKWRAFRLDTGNYSWGSEAVTRKT 125
           Q++  ++  YELGRQPANTKLSS+K++RR+RVRGGNVKWRA RLDTGN+SWGSEAVTRKT
Sbjct: 18  QKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKT 77

Query: 126 RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAAAKKEEE 185
           RILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGVDIGRKKK          
Sbjct: 78  RILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKK---------- 137

Query: 186 GDAAAPAEEAKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYI 245
              A   EE KKSNHVQRKLE RQ+ R LD H+EEQFSSGRL+ACI+SRPGQCGRADGYI
Sbjct: 138 -GEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYI 197

Query: 246 LEGKELEFYMKKLQRKKGKGAGAA 270
           LEGKELEFYMKKLQ+KKGK AGAA
Sbjct: 198 LEGKELEFYMKKLQKKKGKNAGAA 210

The following BLAST results are available for this feature:

BLAST of Lag0029219 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939829.1	6.3e-100	94.97	40S ribosomal protein S8 [Cucurbita moschata] >XP_022993929.1 40S ribosomal prot...	[more]
KAG7016478.1	1.8e-99	96.41	40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022957602.1	3.1e-99	94.47	40S ribosomal protein S8-like [Cucurbita moschata] >XP_022989999.1 40S ribosomal...	[more]
KAG6578955.1	4.1e-99	93.97	40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023550698.1	9.1e-99	94.06	40S ribosomal protein S8 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0029219 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49199	7.3e-91	86.87	40S ribosomal protein S8 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS8 PE=2 S...	[more]
Q08069	1.8e-89	85.43	40S ribosomal protein S8 OS=Zea mays OX=4577 GN=RPS8 PE=2 SV=2	[more]
O81361	9.8e-88	83.42	40S ribosomal protein S8 OS=Prunus armeniaca OX=36596 GN=RPS8 PE=2 SV=1	[more]
Q93VG5	6.0e-85	78.89	40S ribosomal protein S8-1 OS=Arabidopsis thaliana OX=3702 GN=RPS8A PE=1 SV=1	[more]
Q9FIF3	3.0e-84	78.92	40S ribosomal protein S8-2 OS=Arabidopsis thaliana OX=3702 GN=RPS8B PE=2 SV=1	[more]

BLAST of Lag0029219 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K1I2	3.1e-100	94.97	40S ribosomal protein S8 OS=Cucurbita maxima OX=3661 GN=LOC111489780 PE=3 SV=1	[more]
A0A6J1FIB1	3.1e-100	94.97	40S ribosomal protein S8 OS=Cucurbita moschata OX=3662 GN=LOC111445587 PE=3 SV=1	[more]
A0A6J1JQW0	1.5e-99	94.47	40S ribosomal protein S8 OS=Cucurbita maxima OX=3661 GN=LOC111487026 PE=3 SV=1	[more]
A0A6J1GZK4	1.5e-99	94.47	40S ribosomal protein S8 OS=Cucurbita moschata OX=3662 GN=LOC111459010 PE=3 SV=1	[more]
A0A6J1CVC9	6.4e-98	93.97	40S ribosomal protein S8 OS=Momordica charantia OX=3673 GN=LOC111014721 PE=3 SV=...	[more]

BLAST of Lag0029219 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20290.1	4.2e-86	78.89	Ribosomal protein S8e family protein	[more]
AT5G59240.1	2.1e-85	78.92	Ribosomal protein S8e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.290.70		coord: 80..210 e-value: 1.7E-40 score: 139.9 coord: 211..264 e-value: 1.9E-17 score: 65.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..217
None	No IPR available	PANTHER	PTHR10394:SF16	40S RIBOSOMAL PROTEIN S8	coord: 71..268
None	No IPR available	CDD	cd11380	Ribosomal_S8e_like	coord: 75..246 e-value: 7.84161E-56 score: 174.245
IPR022309	Ribosomal protein S8e/ribosomal biogenesis NSA2	PFAM	PF01201	Ribosomal_S8e	coord: 70..246 e-value: 1.4E-43 score: 148.4
IPR001047	Ribosomal protein S8e	TIGRFAM	TIGR00307	TIGR00307	coord: 73..248 e-value: 1.4E-35 score: 120.2
IPR001047	Ribosomal protein S8e	PANTHER	PTHR10394	40S RIBOSOMAL PROTEIN S8	coord: 71..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029219.1	Lag0029219.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome